Home

IGVFFI1819WFUE

released
validated
File Set
IGVFDS2472COJU(CRISPR HiCAR integrating a guide (sgRNA) library targeting accessible genome regions in a genomic locus)
Summary
R1 reads from sequencing run 3
File Format
fastq
Content Type
reads
Aliases
charles-gersbach:measurement-set-crispri-region3-ipsc-cm-targeted-hicar-rep1-R1
md5sum
76f6d529ba9f7a6425128810d74e1466
Content MD5sum
ad26f21596c60133a48e6c61e8d114bc
File Size
2.1 GB
Submitted File Name
/hpc/group/gersbachlab/tda17/IGVF_data_files/HiCAR/fastq/crispri/crispri_hicar_fastq/probe_enriched_krab_region3_1_L1_ds.e7a6b7f561604ed5af818e77e969c199/probe_enriched_krab_region3_1_S5_L001_R1_001.fastq.gz

Sequencing Details

Sequencing Platform
Illumina NextSeq 2000
Sequencing Run
3
Sequencing Kit
NextSeq 1000/2000 P2 Reagent Kit
Illumina Read Type
R1
Average Read Length
100
Read Count
41659910

Samples

1 item
Accession
Type
Sample Terms
Summary
InVitroSystem
GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 42 days, male, Homo sapiens transfected with a guide library

Files Derived From This File

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
mcool
contact matrix
genomic position by genomic position in contact matrix
Charles Gersbach, Duke
139 MB
validated

Attribution

Award
HG012053
Principal Investigator(s)
Contact P.I.
Charles Gersbach
Lab
Charles Gersbach, Duke