IGVFFI1819WFUE

{
    "@context": "/terms/",
    "@id": "/sequence-files/IGVFFI1819WFUE/",
    "@type": [
        "SequenceFile",
        "File",
        "Item"
    ],
    "accession": "IGVFFI1819WFUE",
    "aliases": [
        "charles-gersbach:measurement-set-crispri-region3-ipsc-cm-targeted-hicar-rep1-R1"
    ],
    "assay_titles": [
        "HiCAR"
    ],
    "audit": {},
    "award": {
        "@id": "/awards/HG012053/",
        "component": "functional characterization"
    },
    "content_md5sum": "ad26f21596c60133a48e6c61e8d114bc",
    "content_type": "reads",
    "controlled_access": false,
    "creation_timestamp": "2024-10-23T19:29:14.795428+00:00",
    "externally_hosted": false,
    "file_format": "fastq",
    "file_set": {
        "@id": "/measurement-sets/IGVFDS2472COJU/",
        "accession": "IGVFDS2472COJU",
        "file_set_type": "experimental data",
        "samples": [
            {
                "@id": "/in-vitro-systems/IGVFSM5947VCGI/",
                "accession": "IGVFSM5947VCGI",
                "classifications": [
                    "differentiated cell specimen"
                ],
                "sample_terms": [
                    {
                        "@id": "/sample-terms/EFO_0009747/",
                        "status": "released",
                        "term_name": "GM25256 (WTC-11)"
                    }
                ],
                "status": "released",
                "summary": "GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 42 days, male, Homo sapiens transfected with a guide library",
                "targeted_sample_term": {
                    "@id": "/sample-terms/CL_0000746/",
                    "status": "released",
                    "term_name": "cardiac muscle cell"
                },
                "taxa": "Homo sapiens"
            }
        ],
        "status": "released",
        "summary": "CRISPR HiCAR integrating a guide (sgRNA) library targeting accessible genome regions in a genomic locus"
    },
    "file_size": 2100582295,
    "gene_list_for": [],
    "href": "/sequence-files/IGVFFI1819WFUE/@@download/IGVFFI1819WFUE.fastq.gz",
    "illumina_read_type": "R1",
    "input_file_for": [
        "/matrix-files/IGVFFI6400JRVV/"
    ],
    "integrated_in": [],
    "lab": {
        "@id": "/labs/charles-gersbach/",
        "title": "Charles Gersbach, Duke"
    },
    "loci_list_for": [],
    "maximum_read_length": 100,
    "md5sum": "76f6d529ba9f7a6425128810d74e1466",
    "mean_read_length": 100,
    "minimum_read_length": 100,
    "read_count": 41659910,
    "release_timestamp": "2024-12-13T19:43:33.102113+00:00",
    "s3_uri": "s3://igvf-files/2024/10/23/b5192e9d-966a-44a9-bdfe-04770d32a83a/IGVFFI1819WFUE.fastq.gz",
    "schema_version": "14",
    "seqspecs": [],
    "sequencing_kit": "NextSeq 1000/2000 P2 Reagent Kit",
    "sequencing_platform": {
        "@id": "/platform-terms/EFO_0010963/",
        "status": "released",
        "term_name": "Illumina NextSeq 2000"
    },
    "sequencing_run": 3,
    "status": "released",
    "submitted_by": {
        "@id": "/users/3782ce69-0e9f-4b46-91f9-4578139785c7/",
        "title": "Ruhi Rai"
    },
    "submitted_file_name": "/hpc/group/gersbachlab/tda17/IGVF_data_files/HiCAR/fastq/crispri/crispri_hicar_fastq/probe_enriched_krab_region3_1_L1_ds.e7a6b7f561604ed5af818e77e969c199/probe_enriched_krab_region3_1_S5_L001_R1_001.fastq.gz",
    "summary": "R1 reads from sequencing run 3",
    "upload_status": "validated",
    "uuid": "b5192e9d-966a-44a9-bdfe-04770d32a83a"
}