Home
Home
Search (⌘K or ⌃K)
Data
Methodology
Data Model
About
Help
Sign In
INDEXED
Home
/
SequenceFile
/
IGVFFI0676JCYR
IGVFFI0676JCYR
released
validated
Json view
File Set
IGVFDS5042GGCM
(reporter library targeting random selections genome-wide)
Summary
R1 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
tim-reddy:starr-seq-dna-fastq-k562-P015-R1
md5sum
779f2e61a2201f4b4a4f3a2c5b521272
Content MD5sum
d849b0652aa65fcdcc0250dbd67b9471
File Size
7.3 GB
Submitted File Name
/data/reddylab/Alex/IGVF/data_submissions/raw_data/AIM_1_STARR_seq/K562.starrseq.dna.pool15.R1.fastq.gz
Checkfiles Version
v17
Attribution
Tim Reddy, Duke
(
HG012053
—
Charles Gersbach
)
Sequencing Details
Sequencing Platform
Illumina NextSeq 2000
Sequencing Run
1
Flowcell ID
AACNYKVM5
Lane
1
Sequencing Kit
NextSeq 2000 P3 XLEAP-SBS Reagent Kit
Illumina Read Type
R1
Average Read Length
301
Read Count
52464895
Files Derived From This File
2 items
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
IGVFFI2664SVPC
bam
alignments
custom assembly unfiltered alignments
Tim Reddy, Duke
7.5 GB
validated
IGVFFI3281LZFI
bam
alignments
GRCh38 unfiltered alignments
Tim Reddy, Duke
7.2 GB
validated