IGVFFI0676JCYR

released
validated
1{
2    "@context": "/terms/",
3    "@id": "/sequence-files/IGVFFI0676JCYR/",
4    "@type": [
5        "SequenceFile",
6        "File",
7        "Item"
8    ],
9    "accession": "IGVFFI0676JCYR",
10    "aliases": [
11        "tim-reddy:starr-seq-dna-fastq-k562-P015-R1"
12    ],
13    "assay_titles": [],
14    "audit": {},
15    "award": {
16        "@id": "/awards/HG012053/",
17        "component": "functional characterization"
18    },
19    "checkfiles_version": "v17",
20    "content_md5sum": "d849b0652aa65fcdcc0250dbd67b9471",
21    "content_type": "reads",
22    "controlled_access": false,
23    "creation_timestamp": "2025-02-06T04:03:57.239726+00:00",
24    "externally_hosted": false,
25    "file_format": "fastq",
26    "file_set": {
27        "@id": "/construct-library-sets/IGVFDS5042GGCM/",
28        "@type": [
29            "ConstructLibrarySet",
30            "FileSet",
31            "Item"
32        ],
33        "accession": "IGVFDS5042GGCM",
34        "file_set_type": "reporter library",
35        "status": "released",
36        "summary": "reporter library targeting random selections genome-wide"
37    },
38    "file_size": 7338173534,
39    "flowcell_id": "AACNYKVM5",
40    "gene_list_for": [],
41    "href": "/sequence-files/IGVFFI0676JCYR/@@download/IGVFFI0676JCYR.fastq.gz",
42    "illumina_read_type": "R1",
43    "input_file_for": [
44        "/alignment-files/IGVFFI3281LZFI/",
45        "/alignment-files/IGVFFI2664SVPC/"
46    ],
47    "integrated_in": [],
48    "lab": {
49        "@id": "/labs/tim-reddy/",
50        "title": "Tim Reddy, Duke"
51    },
52    "lane": 1,
53    "loci_list_for": [],
54    "maximum_read_length": 301,
55    "md5sum": "779f2e61a2201f4b4a4f3a2c5b521272",
56    "mean_read_length": 301,
57    "minimum_read_length": 301,
58    "quality_metrics": [],
59    "read_count": 52464895,
60    "read_names": [
61        "Read 1"
62    ],
63    "release_timestamp": "2025-04-09T16:40:12.144855+00:00",
64    "s3_uri": "s3://igvf-files/2025/02/06/96ff5f7a-a6e5-47e1-95b6-5dfd4880aa24/IGVFFI0676JCYR.fastq.gz",
65    "schema_version": "15",
66    "seqspecs": [],
67    "sequencing_kit": "NextSeq 2000 P3 XLEAP-SBS Reagent Kit",
68    "sequencing_platform": {
69        "@id": "/platform-terms/EFO_0010963/",
70        "status": "released",
71        "term_name": "Illumina NextSeq 2000"
72    },
73    "sequencing_run": 1,
74    "status": "released",
75    "submitted_by": {
76        "@id": "/users/29f5f78d-ac90-421e-90c6-a90e1dc407a7/",
77        "title": "Alejandro Barrera"
78    },
79    "submitted_file_name": "/data/reddylab/Alex/IGVF/data_submissions/raw_data/AIM_1_STARR_seq/K562.starrseq.dna.pool15.R1.fastq.gz",
80    "summary": "R1 reads from sequencing run 1",
81    "upload_status": "validated",
82    "uuid": "96ff5f7a-a6e5-47e1-95b6-5dfd4880aa24"
83}