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INDEXED
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SequenceFile
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IGVFFI0459FHFI
IGVFFI0459FHFI
released
validated
Json view
File Set
IGVFDS5205JRNX
(Parse SPLiT-seq)
Summary
R2 reads from sequencing run 1
File Format
fastq
Content Type
reads
md5sum
1b785c2e3fd79139485e9cd35cf39242
Content MD5sum
bfb2eb99b6754f279c5d42ecf222cf7a
File Size
6.8 GB
Submitted File Name
igvf_b01/next2/igvf_b01_B01_D_next_N2_R2.fastq.gz
Sequencing Details
Sequencing Platform
Illumina NextSeq 2000
Sequencing Run
1
Flowcell ID
AAC2JNKHV
Lane
1
Sequencing Kit
NextSeq 1000/2000 P3 Reagent Kit
Illumina Read Type
R2
Average Read Length
86
Read Count
153649839
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Summary
IGVFSM1676SYRC
MultiplexedSample
left cerebral cortex
multiplexed sample: left cerebral cortex tissue, female, Mus musculus CASTJ (72 days); left cerebral cortex tissue, male, Mus musculus B6J (72 days); ... and 6 more samples
Files Derived From This File
1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
IGVFFI4547MCXL
tar
sparse gene count matrix
cell by gene in sparse gene count matrix
Ali Mortazavi, UCI
426 MB
validated
Associated seqspec Files
1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
IGVFFI3228LOOM
yaml
seqspec
seqspec of IGVFFI0541TEFJ, IGVFFI0459FHFI
Ali Mortazavi, UCI
1.1 KB
validated
Attribution
Award
HG012077
Principal Investigator(s)
Lior Pachter
,
Kim Green
,
Grant MacGregor
,
Ali Mortazavi
,
Barbara Wold
Contact P.I.
Ali Mortazavi
Lab
Ali Mortazavi, UCI