{
"@context": "/terms/",
"@id": "/sequence-files/IGVFFI0459FHFI/",
"@type": [
"SequenceFile",
"File",
"Item"
],
"accession": "IGVFFI0459FHFI",
"assay_titles": [
"Parse SPLiT-seq"
],
"audit": {},
"award": {
"@id": "/awards/HG012077/",
"component": "mapping"
},
"content_md5sum": "bfb2eb99b6754f279c5d42ecf222cf7a",
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-08-25T20:00:28.178149+00:00",
"externally_hosted": false,
"file_format": "fastq",
"file_set": {
"@id": "/measurement-sets/IGVFDS5205JRNX/",
"accession": "IGVFDS5205JRNX",
"file_set_type": "experimental data",
"samples": [
{
"@id": "/multiplexed-samples/IGVFSM1676SYRC/",
"accession": "IGVFSM1676SYRC",
"classifications": [
"multiplexed sample"
],
"disease_terms": [],
"modifications": [],
"sample_terms": [
{
"@id": "/sample-terms/NTR_0000646/",
"status": "released",
"term_name": "left cerebral cortex"
}
],
"status": "released",
"summary": "multiplexed sample: left cerebral cortex tissue, female, Mus musculus CASTJ (72 days); left cerebral cortex tissue, male, Mus musculus B6J (72 days); ... and 6 more samples",
"taxa": "Mus musculus",
"treatments": []
}
],
"status": "released",
"summary": "Parse SPLiT-seq"
},
"file_size": 6795390555,
"flowcell_id": "AAC2JNKHV",
"gene_list_for": [],
"href": "/sequence-files/IGVFFI0459FHFI/@@download/IGVFFI0459FHFI.fastq.gz",
"illumina_read_type": "R2",
"input_file_for": [
"/matrix-files/IGVFFI4547MCXL/",
"/matrix-files/IGVFFI4301ZKKT/"
],
"integrated_in": [],
"lab": {
"@id": "/labs/ali-mortazavi/",
"title": "Ali Mortazavi, UCI"
},
"lane": 1,
"loci_list_for": [],
"maximum_read_length": 86,
"md5sum": "1b785c2e3fd79139485e9cd35cf39242",
"mean_read_length": 86,
"minimum_read_length": 86,
"read_count": 153649839,
"release_timestamp": "2024-05-08T23:38:37.332301+00:00",
"s3_uri": "s3://igvf-files/2023/08/25/c3f7f53c-676b-450e-9d91-102025096920/IGVFFI0459FHFI.fastq.gz",
"schema_version": "14",
"seqspecs": [
"/configuration-files/IGVFFI3228LOOM/"
],
"sequencing_kit": "NextSeq 1000/2000 P3 Reagent Kit",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0010963/",
"status": "released",
"term_name": "Illumina NextSeq 2000"
},
"sequencing_run": 1,
"status": "released",
"submitted_by": {
"@id": "/users/ebd1025b-e3ab-4e51-bfcd-1415f278281a/",
"title": "Diane Trout"
},
"submitted_file_name": "igvf_b01/next2/igvf_b01_B01_D_next_N2_R2.fastq.gz",
"summary": "R2 reads from sequencing run 1",
"upload_status": "validated",
"uuid": "c3f7f53c-676b-450e-9d91-102025096920"
}