IGVF

Click and hold a term momentarily to select items without that term.

342 items

MatrixFile
IGVFFI5092EVUK
tar - cell by gene in sparse gene count matrix
Ali Mortazavi, UCI
Content Summary
cell by gene in sparse gene count matrix
AnalysisSe
Parse SPLiT-seq: sparse gene count matrix
released
validated
MatrixFile
IGVFFI5122BKVT
hdf5 - cell by gene in raw feature barcode matrix
Ansuman Satpathy, Stanford
Content Summary
cell by gene in raw feature barcode matrix
AnalysisSe
single-nucleus ATAC-seq (10x multiome with MULTI-seq), single-nucleus RNA sequencing assay (10x multiome with MULTI-seq): cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix
released
validated
MatrixFile
IGVFFI4155ERID
tar - cell by gene in sparse gene count matrix
Ali Mortazavi, UCI
Content Summary
cell by gene in sparse gene count matrix
AnalysisSe
Parse SPLiT-seq: sparse gene count matrix
released
validated
MatrixFile
IGVFFI1537EMUG
tar - cell by gene in sparse gene count matrix
Ali Mortazavi, UCI
Content Summary
cell by gene in sparse gene count matrix
AnalysisSe
Parse SPLiT-seq: sparse gene count matrix
released
validated
MatrixFile
IGVFFI6540XMZX
tar - cell by gene in sparse gene count matrix
Ali Mortazavi, UCI
Content Summary
cell by gene in sparse gene count matrix
AnalysisSe
Parse SPLiT-seq: sparse gene count matrix
released
validated
MatrixFile
IGVFFI6540UVML
tar - cell by gene in sparse gene count matrix
Ali Mortazavi, UCI
Content Summary
cell by gene in sparse gene count matrix
AnalysisSe
Parse SPLiT-seq: sparse gene count matrix
released
validated
MatrixFile
IGVFFI8676NBKL
tar - cell by gene in sparse gene count matrix
Ali Mortazavi, UCI
Content Summary
cell by gene in sparse gene count matrix
AnalysisSe
Parse SPLiT-seq: sparse gene count matrix
released
validated
MatrixFile
IGVFFI8873RHRT
tar - cell by gene in sparse gene count matrix
Ali Mortazavi, UCI
Content Summary
cell by gene in sparse gene count matrix
AnalysisSe
Parse SPLiT-seq: sparse gene count matrix
released
validated
MatrixFile
IGVFFI5731ZKRJ
tar - cell by gene in filtered feature barcode matrix
Jay Shendure, UW
Content Summary
cell by gene in filtered feature barcode matrix
AnalysisSe
scCRISPR activation screen: differential gene expression quantifications, filtered feature barcode matrix
released
validated
MatrixFile
IGVFFI9658NBQE
hdf5 - cell by gene expression in raw feature barcode matrix
Harinder Singh, University of Pittsburgh
Content Summary
cell by gene expression in raw feature barcode matrix
AnalysisSe
single-nucleus ATAC-seq (10x multiome), single-nucleus RNA sequencing assay (10x multiome): barcode to element mapping, fragments, raw feature barcode matrix
preview
validated
MatrixFile
IGVFFI5572FFDR
tar - cell by gene in sparse gene count matrix
Ali Mortazavi, UCI
Content Summary
cell by gene in sparse gene count matrix
AnalysisSe
Parse SPLiT-seq: sparse gene count matrix
released
validated
MatrixFile
IGVFFI0015OJLL
pkl - cell by CRISPR guide capture in raw feature barcode matrix
Gary Hon, UT
Content Summary
cell by CRISPR guide capture in raw feature barcode matrix
AnalysisSe
CRISPR interference Perturb-seq: filtered feature barcode matrix, raw feature barcode matrix, sparse gene count matrix, unfiltered global differential expression, unfiltered local differential expression
preview
validated
MatrixFile
IGVFFI4791CJDG
tar - cell by gene in sparse gene count matrix
Ali Mortazavi, UCI
Content Summary
cell by gene in sparse gene count matrix
AnalysisSe
Parse SPLiT-seq: sparse gene count matrix
released
validated
MatrixFile
IGVFFI9908RNHL
tar - cell by gene in sparse gene count matrix
Ali Mortazavi, UCI
Content Summary
cell by gene in sparse gene count matrix
AnalysisSe
Parse SPLiT-seq: sparse gene count matrix
released
validated
MatrixFile
IGVFFI0275MSZK
tar - cell by gene in sparse gene count matrix
Ali Mortazavi, UCI
Content Summary
cell by gene in sparse gene count matrix
AnalysisSe
Parse SPLiT-seq: sparse gene count matrix
released
validated
MatrixFile
IGVFFI4028UJSM
tar - cell by gene in sparse gene count matrix
Ali Mortazavi, UCI
Content Summary
cell by gene in sparse gene count matrix
AnalysisSe
Parse SPLiT-seq: sparse gene count matrix
released
validated
MatrixFile
IGVFFI0468AHGV
pkl - cell by CRISPR guide capture in raw feature barcode matrix
Gary Hon, UT
Content Summary
cell by CRISPR guide capture in raw feature barcode matrix
AnalysisSe
CRISPR interference Perturb-seq: filtered feature barcode matrix, raw feature barcode matrix, sparse gene count matrix, unfiltered global differential expression, unfiltered local differential expression
preview
validated
MatrixFile
IGVFFI8624MCFO
tar - cell by gene in sparse gene count matrix
Ali Mortazavi, UCI
Content Summary
cell by gene in sparse gene count matrix
AnalysisSe
Parse SPLiT-seq: sparse gene count matrix
released
validated
MatrixFile
IGVFFI2668HIRN
h5ad - cell by gene expression in sparse gene count matrix
Harinder Singh, University of Pittsburgh
Content Summary
cell by gene expression in sparse gene count matrix
AnalysisSe
scRNA-seq: sparse gene count matrix
preview
validated
MatrixFile
IGVFFI5252BPFG
hdf5 - cell by gene in raw feature barcode matrix
Ansuman Satpathy, Stanford
Content Summary
cell by gene in raw feature barcode matrix
AnalysisSe
10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix
released
validated
MatrixFile
IGVFFI4035YXBX
mcool - genomic position by genomic position in contact matrix
Charles Gersbach, Duke
Content Summary
genomic position by genomic position in contact matrix
AnalysisSe
CRISPR HiCAR: contact matrix
released
validated
MatrixFile
IGVFFI3003LKFU
h5ad - cell by gene in sparse gene count matrix
Ali Mortazavi, UCI
Content Summary
cell by gene in sparse gene count matrix
AnalysisSe
Parse SPLiT-seq: sparse gene count matrix
released
validated
MatrixFile
IGVFFI6053CXKY
hdf5 - cell by gene expression in raw feature barcode matrix
Harinder Singh, University of Pittsburgh
Content Summary
cell by gene expression in raw feature barcode matrix
AnalysisSe
single-nucleus ATAC-seq (10x multiome), single-nucleus RNA sequencing assay (10x multiome): barcode to element mapping, fragments, raw feature barcode matrix
preview
validated
MatrixFile
IGVFFI5074IKKL
h5ad - cell by gene in sparse gene count matrix
Ali Mortazavi, UCI
Content Summary
cell by gene in sparse gene count matrix
AnalysisSe
Parse SPLiT-seq: sparse gene count matrix
released
validated
MatrixFile
IGVFFI2561CRHD
h5ad - cell by gene in sparse gene count matrix
Ali Mortazavi, UCI
Content Summary
cell by gene in sparse gene count matrix
AnalysisSe
Parse SPLiT-seq: sparse gene count matrix
released
validated

Content Type

File Format

Principal Dimension

Secondary Dimensions

File Set Type

Preferred Assay Title

Taxa

Sample

Classification

Cellular Transformation Target

Disease

Modification

Treatment

Workflow

Uniformly Processed

Lab

Award

Upload Status

Status

Audit Not Compliant