IGVF

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167 items

MatrixFile
IGVFFI5122BKVT
hdf5 - cell by gene in raw feature barcode matrix
Ansuman Satpathy, Stanford
Content Summary
cell by gene in raw feature barcode matrix
File Set
10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix
released
validated
MatrixFile
IGVFFI5731ZKRJ
tar - cell by gene in filtered feature barcode matrix
Jay Shendure, UW
Content Summary
cell by gene in filtered feature barcode matrix
File Set
scCRISPR activation screen: differential gene expression quantifications, filtered feature barcode matrix
released
validated
MatrixFile
IGVFFI0015OJLL
pkl - cell by CRISPR guide capture in raw feature barcode matrix
Gary Hon, UT
Content Summary
cell by CRISPR guide capture in raw feature barcode matrix
File Set
interference Perturb-seq: filtered feature barcode matrix, raw feature barcode matrix, sparse gene count matrix, unfiltered global differential expression, unfiltered local differential expression
preview
validated
MatrixFile
IGVFFI4028UJSM
tar - cell by gene in sparse gene count matrix
Ali Mortazavi, UCI
Content Summary
cell by gene in sparse gene count matrix
File Set
Parse SPLiT-seq: sparse gene count matrix
released
validated
MatrixFile
IGVFFI0468AHGV
pkl - cell by CRISPR guide capture in raw feature barcode matrix
Gary Hon, UT
Content Summary
cell by CRISPR guide capture in raw feature barcode matrix
File Set
interference Perturb-seq: filtered feature barcode matrix, raw feature barcode matrix, sparse gene count matrix, unfiltered global differential expression, unfiltered local differential expression
preview
validated
MatrixFile
IGVFFI5252BPFG
hdf5 - cell by gene in raw feature barcode matrix
Ansuman Satpathy, Stanford
Content Summary
cell by gene in raw feature barcode matrix
File Set
10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix
released
validated
MatrixFile
IGVFFI4035YXBX
mcool - genomic position by genomic position in contact matrix
Charles Gersbach, Duke
Content Summary
genomic position by genomic position in contact matrix
File Set
HiCAR: contact matrix
released
validated
MatrixFile
IGVFFI2561CRHD
h5ad - cell by gene in sparse gene count matrix
Ali Mortazavi, UCI
Content Summary
cell by gene in sparse gene count matrix
File Set
Parse SPLiT-seq: sparse gene count matrix
released
validated
MatrixFile
IGVFFI6420RRDI
tar - cell by gene in sparse gene count matrix
Ali Mortazavi, UCI
Content Summary
cell by gene in sparse gene count matrix
File Set
Parse SPLiT-seq: sparse gene count matrix
released
validated
MatrixFile
IGVFFI6258ELSL
hdf5 - cell by gene in raw feature barcode matrix
Ansuman Satpathy, Stanford
Content Summary
cell by gene in raw feature barcode matrix
File Set
10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix
released
validated
MatrixFile
IGVFFI2160BPKW
cool - genomic position by genomic position in contact matrix
Charles Gersbach, Duke
Content Summary
genomic position by genomic position in contact matrix
File Set
HiCAR: contact matrix
released
validated
MatrixFile
IGVFFI0315UORM
h5ad - cell by gene in sparse gene count matrix
Jason Buenrostro, Broad
Content Summary
cell by gene in sparse gene count matrix
File Set
SHARE-seq: fragments, sparse gene count matrix
released
validated
MatrixFile
IGVFFI9496UPFJ
tar - gene by gene expression by CRISPR guide capture in filtered feature barcode matrix
Charles Gersbach, Duke
Content Summary
gene by gene expression by CRISPR guide capture in filtered feature barcode matrix
File Set
activation Perturb-seq: differential gene expression quantifications, filtered feature barcode matrix
released
validated
MatrixFile
IGVFFI6973SBDI
hdf5 - cell by UMI count in filtered feature barcode matrix
Gary Hon, UT
Content Summary
cell by UMI count in filtered feature barcode matrix
File Set
interference Perturb-seq: filtered feature barcode matrix, raw feature barcode matrix, sparse gene count matrix, unfiltered global differential expression, unfiltered local differential expression
preview
validated
MatrixFile
IGVFFI3202KBBO
hdf5 - cell by gene in raw feature barcode matrix
Ansuman Satpathy, Stanford
Content Summary
cell by gene in raw feature barcode matrix
File Set
10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix
released
validated
MatrixFile
IGVFFI6354ZOBV
hdf5 - cell by gene in raw feature barcode matrix
Ansuman Satpathy, Stanford
Content Summary
cell by gene in raw feature barcode matrix
File Set
10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix
released
validated
MatrixFile
IGVFFI6422LYRX
hdf5 - cell by gene in raw feature barcode matrix
Ansuman Satpathy, Stanford
Content Summary
cell by gene in raw feature barcode matrix
File Set
10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix
released
validated
MatrixFile
IGVFFI7202EABO
hdf5 - cell by UMI count in filtered feature barcode matrix
Gary Hon, UT
Content Summary
cell by UMI count in filtered feature barcode matrix
File Set
interference Perturb-seq: filtered feature barcode matrix, raw feature barcode matrix, sparse gene count matrix
preview
validated
MatrixFile
IGVFFI6124CLAF
tar - gene by gene expression by CRISPR guide capture in filtered feature barcode matrix
Charles Gersbach, Duke
Content Summary
gene by gene expression by CRISPR guide capture in filtered feature barcode matrix
File Set
activation Perturb-seq: differential gene expression quantifications, filtered feature barcode matrix
released
validated
MatrixFile
IGVFFI0412HTWJ
h5ad - cell by gene expression in sparse gene count matrix
Gary Hon, UT
Content Summary
cell by gene expression in sparse gene count matrix
File Set
interference Perturb-seq: filtered feature barcode matrix, raw feature barcode matrix, sparse gene count matrix
preview
validated
MatrixFile
IGVFFI2733DASR
hdf5 - cell by gene in raw feature barcode matrix
Ansuman Satpathy, Stanford
Content Summary
cell by gene in raw feature barcode matrix
File Set
10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix
released
validated
MatrixFile
IGVFFI8842WHFD
tar - cell by gene in sparse gene count matrix
Ali Mortazavi, UCI
Content Summary
cell by gene in sparse gene count matrix
File Set
Parse SPLiT-seq: sparse gene count matrix
revoked
validated
MatrixFile
IGVFFI4765CAWH
cool - genomic position by genomic position in contact matrix
Charles Gersbach, Duke
Content Summary
genomic position by genomic position in contact matrix
File Set
HiCAR: contact matrix
released
validated
MatrixFile
IGVFFI3187CILT
tar - gene by gene expression by CRISPR guide capture in filtered feature barcode matrix
Charles Gersbach, Duke
Content Summary
gene by gene expression by CRISPR guide capture in filtered feature barcode matrix
File Set
activation Perturb-seq: differential gene expression quantifications, filtered feature barcode matrix
released
validated
MatrixFile
IGVFFI2076THHW
cool - genomic position by genomic position in contact matrix
Charles Gersbach, Duke
Content Summary
genomic position by genomic position in contact matrix
File Set
HiCAR: contact matrix
released
validated

Content Type

File Format

Principal Dimension

Secondary Dimensions

File Set Type

Preferred Assay Title

Taxa

Sample

Classification

Cellular Transformation Target

Disease

Modification

Treatment

Workflow

Uniformly Processed

Lab

Award

Upload Status

Status

Audit Not Compliant