IGVF

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Content Type

sparse gene count matrix
19
filtered feature barcode matrix
6

File Format

tar
16
h5ad
9

Principal Dimension

cell
19
gene
6

Secondary Dimensions

gene
19
CRISPR guide capture
6
gene expression
6

25 items

MatrixFile
IGVFFI5731ZKRJ
tar - cell by gene in sparse gene count matrix
Jay Shendure, UW
Content Summary
cell by gene in sparse gene count matrix
File Set
scCRISPR activation screen: differential gene expression quantifications, sparse gene count matrix
released
validated
MatrixFile
IGVFFI2561CRHD
h5ad - cell by gene in sparse gene count matrix
Ali Mortazavi, UCI
Content Summary
cell by gene in sparse gene count matrix
File Set
Parse SPLiT-seq: sparse gene count matrix
released
validated
MatrixFile
IGVFFI9496UPFJ
tar - gene by gene expression by CRISPR guide capture in filtered feature barcode matrix
Charles Gersbach, Duke
Content Summary
gene by gene expression by CRISPR guide capture in filtered feature barcode matrix
File Set
activation Perturb-seq: filtered feature barcode matrix
released
validated
MatrixFile
IGVFFI6124CLAF
tar - gene by gene expression by CRISPR guide capture in filtered feature barcode matrix
Charles Gersbach, Duke
Content Summary
gene by gene expression by CRISPR guide capture in filtered feature barcode matrix
File Set
activation Perturb-seq: filtered feature barcode matrix
released
validated
MatrixFile
IGVFFI8842WHFD
tar - cell by gene in sparse gene count matrix
Ali Mortazavi, UCI
Content Summary
cell by gene in sparse gene count matrix
File Set
Parse SPLiT-seq: sparse gene count matrix
released
validated
MatrixFile
IGVFFI3187CILT
tar - gene by gene expression by CRISPR guide capture in filtered feature barcode matrix
Charles Gersbach, Duke
Content Summary
gene by gene expression by CRISPR guide capture in filtered feature barcode matrix
File Set
activation Perturb-seq: filtered feature barcode matrix
released
validated
MatrixFile
IGVFFI0296HFSP
tar - gene by gene expression by CRISPR guide capture in filtered feature barcode matrix
Charles Gersbach, Duke
Content Summary
gene by gene expression by CRISPR guide capture in filtered feature barcode matrix
File Set
interference Perturb-seq: filtered feature barcode matrix
released
validated
MatrixFile
IGVFFI3686NNKA
tar - cell by gene in sparse gene count matrix
Ali Mortazavi, UCI
Content Summary
cell by gene in sparse gene count matrix
File Set
Parse SPLiT-seq: sparse gene count matrix
released
validated
MatrixFile
IGVFFI6619VWBZ
tar - cell by gene in sparse gene count matrix
Ali Mortazavi, UCI
Content Summary
cell by gene in sparse gene count matrix
File Set
Parse SPLiT-seq: sparse gene count matrix
released
validated
MatrixFile
IGVFFI9845HLID
h5ad - cell by gene in sparse gene count matrix
Ali Mortazavi, UCI
Content Summary
cell by gene in sparse gene count matrix
File Set
Parse SPLiT-seq: sparse gene count matrix
released
validated
MatrixFile
IGVFFI7101DZKK
tar - gene by gene expression by CRISPR guide capture in filtered feature barcode matrix
Charles Gersbach, Duke
Content Summary
gene by gene expression by CRISPR guide capture in filtered feature barcode matrix
File Set
interference Perturb-seq: filtered feature barcode matrix
released
validated
MatrixFile
IGVFFI7201GVKN
h5ad - cell by gene in sparse gene count matrix
Ali Mortazavi, UCI
Content Summary
cell by gene in sparse gene count matrix
File Set
Parse SPLiT-seq: sparse gene count matrix
released
validated
MatrixFile
IGVFFI6356ADHE
tar - cell by gene in sparse gene count matrix
Ali Mortazavi, UCI
Content Summary
cell by gene in sparse gene count matrix
File Set
Parse SPLiT-seq: sparse gene count matrix
released
validated
MatrixFile
IGVFFI1237TMFC
tar - cell by gene in sparse gene count matrix
Ali Mortazavi, UCI
Content Summary
cell by gene in sparse gene count matrix
File Set
Parse SPLiT-seq: sparse gene count matrix
released
validated
MatrixFile
IGVFFI7974XEFF
h5ad - cell by gene in sparse gene count matrix
Ali Mortazavi, UCI
Content Summary
cell by gene in sparse gene count matrix
File Set
Parse SPLiT-seq: sparse gene count matrix
released
validated
MatrixFile
IGVFFI1437MSLC
tar - cell by gene in sparse gene count matrix
Ali Mortazavi, UCI
Content Summary
cell by gene in sparse gene count matrix
File Set
Parse SPLiT-seq: sparse gene count matrix
released
validated
MatrixFile
IGVFFI5345SNRS
h5ad - cell by gene in sparse gene count matrix
Ali Mortazavi, UCI
Content Summary
cell by gene in sparse gene count matrix
File Set
Parse SPLiT-seq: sparse gene count matrix
released
validated
MatrixFile
IGVFFI1577SBWN
h5ad - cell by gene in sparse gene count matrix
Ali Mortazavi, UCI
Content Summary
cell by gene in sparse gene count matrix
File Set
Parse SPLiT-seq: sparse gene count matrix
released
validated
MatrixFile
IGVFFI3320ZCCE
h5ad - cell by gene in sparse gene count matrix
Ali Mortazavi, UCI
Content Summary
cell by gene in sparse gene count matrix
File Set
Parse SPLiT-seq: sparse gene count matrix
released
validated
MatrixFile
IGVFFI8270PCLP
tar - cell by gene in sparse gene count matrix
Jay Shendure, UW
Content Summary
cell by gene in sparse gene count matrix
File Set
scCRISPR activation screen: differential gene expression quantifications, sparse gene count matrix
released
validated
MatrixFile
IGVFFI0547WZWK
tar - gene by gene expression by CRISPR guide capture in filtered feature barcode matrix
Charles Gersbach, Duke
Content Summary
gene by gene expression by CRISPR guide capture in filtered feature barcode matrix
File Set
interference Perturb-seq: filtered feature barcode matrix
released
validated
MatrixFile
IGVFFI4726EDUJ
h5ad - cell by gene in sparse gene count matrix
Ali Mortazavi, UCI
Content Summary
cell by gene in sparse gene count matrix
File Set
Parse SPLiT-seq: sparse gene count matrix
released
validated
MatrixFile
IGVFFI3984YVBB
tar - cell by gene in sparse gene count matrix
Ali Mortazavi, UCI
Content Summary
cell by gene in sparse gene count matrix
File Set
Parse SPLiT-seq: sparse gene count matrix
released
validated
MatrixFile
IGVFFI4547MCXL
tar - cell by gene in sparse gene count matrix
Ali Mortazavi, UCI
Content Summary
cell by gene in sparse gene count matrix
File Set
Parse SPLiT-seq: sparse gene count matrix
released
validated
MatrixFile
IGVFFI7274KDWO
h5ad - cell by gene in sparse gene count matrix
Ali Mortazavi, UCI
Content Summary
cell by gene in sparse gene count matrix
File Set
Parse SPLiT-seq: sparse gene count matrix
released
validated