IGVF

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360 items

MatrixFile
IGVFFI5092EVUK
tar - cell by gene in sparse gene count matrix
Ali Mortazavi, UCI
Content Summary
cell by gene in sparse gene count matrix
AnalysisSe
Parse SPLiT-seq
released
validated
MatrixFile
IGVFFI0400PXGY
h5ad - cell by gene in sparse gene count matrix
Jason Buenrostro, Broad
Content Summary
cell by gene in sparse gene count matrix
AnalysisSe
single-cell ATAC-seq (SHARE-seq), single-cell RNA sequencing assay (SHARE-seq)
released
validated
MatrixFile
IGVFFI5122BKVT
hdf5 - cell by gene in raw feature barcode matrix
Ansuman Satpathy, Stanford
Content Summary
cell by gene in raw feature barcode matrix
AnalysisSe
single-nucleus ATAC-seq (10x multiome with MULTI-seq), single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)
released
validated
MatrixFile
IGVFFI9574KLIF
h5ad - cell by gene in sparse gene count matrix
Jason Buenrostro, Broad
Content Summary
cell by gene in sparse gene count matrix
AnalysisSe
single-cell ATAC-seq (SHARE-seq), single-cell RNA sequencing assay (SHARE-seq)
released
validated
MatrixFile
IGVFFI4155ERID
tar - cell by gene in sparse gene count matrix
Ali Mortazavi, UCI
Content Summary
cell by gene in sparse gene count matrix
AnalysisSe
Parse SPLiT-seq
released
validated
MatrixFile
IGVFFI1537EMUG
tar - cell by gene in sparse gene count matrix
Ali Mortazavi, UCI
Content Summary
cell by gene in sparse gene count matrix
AnalysisSe
Parse SPLiT-seq
released
validated
MatrixFile
IGVFFI6540XMZX
tar - cell by gene in sparse gene count matrix
Ali Mortazavi, UCI
Content Summary
cell by gene in sparse gene count matrix
AnalysisSe
Parse SPLiT-seq
released
validated
MatrixFile
IGVFFI6540UVML
tar - cell by gene in sparse gene count matrix
Ali Mortazavi, UCI
Content Summary
cell by gene in sparse gene count matrix
AnalysisSe
Parse SPLiT-seq
released
validated
MatrixFile
IGVFFI8676NBKL
tar - cell by gene in sparse gene count matrix
Ali Mortazavi, UCI
Content Summary
cell by gene in sparse gene count matrix
AnalysisSe
Parse SPLiT-seq
released
validated
MatrixFile
IGVFFI8873RHRT
tar - cell by gene in sparse gene count matrix
Ali Mortazavi, UCI
Content Summary
cell by gene in sparse gene count matrix
AnalysisSe
Parse SPLiT-seq
released
validated
MatrixFile
IGVFFI5731ZKRJ
tar - cell by gene in filtered feature barcode matrix
Jay Shendure, UW
Content Summary
cell by gene in filtered feature barcode matrix
AnalysisSe
scCRISPR activation screen integrating a guide (sgRNA) library targeting TF binding sites, candidate cis-regulatory elements in many genomic loci
released
validated
MatrixFile
IGVFFI9658NBQE
hdf5 - cell by gene expression in raw feature barcode matrix
Harinder Singh, University of Pittsburgh
Content Summary
cell by gene expression in raw feature barcode matrix
AnalysisSe
single-nucleus ATAC-seq (10x multiome), single-nucleus RNA sequencing assay (10x multiome)
released
validated
MatrixFile
IGVFFI5572FFDR
tar - cell by gene in sparse gene count matrix
Ali Mortazavi, UCI
Content Summary
cell by gene in sparse gene count matrix
AnalysisSe
Parse SPLiT-seq
released
validated
MatrixFile
IGVFFI0015OJLL
pkl - cell by CRISPR guide capture in raw feature barcode matrix
Gary Hon, UT
Content Summary
cell by CRISPR guide capture in raw feature barcode matrix
AnalysisSe
CRISPR interference Perturb-seq integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci
preview
validated
MatrixFile
IGVFFI4791CJDG
tar - cell by gene in sparse gene count matrix
Ali Mortazavi, UCI
Content Summary
cell by gene in sparse gene count matrix
AnalysisSe
Parse SPLiT-seq
released
validated
MatrixFile
IGVFFI9908RNHL
tar - cell by gene in sparse gene count matrix
Ali Mortazavi, UCI
Content Summary
cell by gene in sparse gene count matrix
AnalysisSe
Parse SPLiT-seq
released
validated
MatrixFile
IGVFFI0275MSZK
tar - cell by gene in sparse gene count matrix
Ali Mortazavi, UCI
Content Summary
cell by gene in sparse gene count matrix
AnalysisSe
Parse SPLiT-seq
released
validated
MatrixFile
IGVFFI4028UJSM
tar - cell by gene in sparse gene count matrix
Ali Mortazavi, UCI
Content Summary
cell by gene in sparse gene count matrix
AnalysisSe
Parse SPLiT-seq
released
validated
MatrixFile
IGVFFI0468AHGV
pkl - cell by CRISPR guide capture in raw feature barcode matrix
Gary Hon, UT
Content Summary
cell by CRISPR guide capture in raw feature barcode matrix
AnalysisSe
CRISPR interference Perturb-seq integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci
preview
validated
MatrixFile
IGVFFI8624MCFO
tar - cell by gene in sparse gene count matrix
Ali Mortazavi, UCI
Content Summary
cell by gene in sparse gene count matrix
AnalysisSe
Parse SPLiT-seq
released
validated
MatrixFile
IGVFFI2668HIRN
h5ad - cell by gene expression in sparse gene count matrix
Harinder Singh, University of Pittsburgh
Content Summary
cell by gene expression in sparse gene count matrix
AnalysisSe
scRNA-seq
released
validated
MatrixFile
IGVFFI5643DMQY
h5ad - cell by gene in sparse gene count matrix
Jason Buenrostro, Broad
Content Summary
cell by gene in sparse gene count matrix
AnalysisSe
single-cell ATAC-seq (SHARE-seq), single-cell RNA sequencing assay (SHARE-seq)
released
validated
MatrixFile
IGVFFI5252BPFG
hdf5 - cell by gene in raw feature barcode matrix
Ansuman Satpathy, Stanford
Content Summary
cell by gene in raw feature barcode matrix
AnalysisSe
single-nucleus ATAC-seq (10x multiome with MULTI-seq), single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)
released
validated
MatrixFile
IGVFFI4035YXBX
mcool - genomic position by genomic position in contact matrix
Charles Gersbach, Duke
Content Summary
genomic position by genomic position in contact matrix
AnalysisSe
CRISPR HiCAR integrating a non-targeting guide (sgRNA) library
released
validated
MatrixFile
IGVFFI3003LKFU
h5ad - cell by gene in sparse gene count matrix
Ali Mortazavi, UCI
Content Summary
cell by gene in sparse gene count matrix
AnalysisSe
Parse SPLiT-seq
released
validated

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Audit Not Compliant