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103 items
  • Document
    Subpool_6_report.pdf
    UCI/Caltech IGVF dataset pipeline report for ali-mortazavi:IGVF_B01_subpool_6
    Ali Mortazavi, UCIplate map
    released
  • Document
    mageck_variant_scores_file_format_specification.pdf
    File format specification for per-variant scores produced by MAGeCK
    Daniel Bauer, HSCIfile format specification
    released
  • Document
    IGVF_MPRA_Reporter_Barcode_Experiment.pdf
    IGVF MPRA reporter barcode experiment format
    Nadav Ahituv, UCSFfile format specification
    released
  • Document
    pSM54-AIO-hUBC-dSaCas9-2xVP64-2A-Thy1.1 Map.pdf
    AIO-hUBC-dSaCas9-2xVP64-2A-Thy1.1 Map
    Charles Gersbach, Dukeplasmid map
    released
  • Document
    protocol_NPC_Differentiation_Munshi_lab_1.pdf
    sgRNA for TF Perturb Seq Pilot NPCs
    Gary Hon, UTcell fate change protocol
    preview
  • Document
    IGVF_MPRA_Reporter_Experiment.pdf
    IGVF MPRA reporter experiment format
    Nadav Ahituv, UCSFfile format specification
    released
  • Document
    p043_PB_oBC_minP_GFP_mBC.pdf
    Plasmid map for scQers vector pdf format
    Jay Shendure, UWplasmid map
    released
  • Document
    scnt-seq2-single-cell-metabolically-labelled-new-r-de4h3gt6.pdf
    scNT-seq protocol
    Hao Wu, UPennexperimental protocol
    released
  • Document
    Gene counts table file format specification rna_atac.pdf
    Gene counts table
    Charles Gersbach, Dukefile format specification
    released
  • Document
    raw_rna_count_marix_format.pdf
    Raw RNA count matrix definition for 10x multiome
    Ansuman Satpathy, Stanfordfile format specification
    released
  • Document
    masai-shareseq-v2-fragment-file-spec.pdf
    Specification of fragment file generated by https://github.com/masai1116/SHARE-seq-alignmentV2
    Jason Buenrostro, Broadfile format specification
    released
  • Document
    Subpool_2_report.pdf
    UCI/Caltech IGVF dataset pipeline report for ali-mortazavi:IGVF_B01_subpool_2
    Ali Mortazavi, UCIplate map
    released
  • Document
    Addgene_TRE-KRAB-dCas9-IRES-BFP.pdf
    Addgene Plasmid Map TRE-KRAB-dCas9-IRES-BFP
    Jesse Engreitz, Stanfordplasmid map
    released
  • Document
    Gene counts table file format specification rna_atac.pdf
    Gene counts table
    Charles Gersbach, Dukefile format specification
    released
  • Document
    FFS_for_SPECTRE_Tables.pdf
    File format specification for SPECTRE tables
    Jay Shendure, UWfile format specification
    released
  • Document
    cohesin loss referenc paper.pdf
    Generation of HCT116-RAD21-mAID-mClover
    Jesse Engreitz, Stanfordexperimental protocol
    released
  • Document
    seurat mast results file format specification.pdf
    seurat FindMarkers mast results
    Charles Gersbach, Dukefile format specification
    released
  • Document
    pSM65-hUbc-BAFT3-2A-eGFP Map.pdf
    hUBC 2A eGFP BATF3 Map
    Charles Gersbach, Dukeplasmid map
    released
  • Document
    Cooler___supplementary_data.pdf
    Contact matrix mcool files
    Charles Gersbach, Dukefile format specification
    released
  • Document
    masai-shareseq-v2-matrix-spec.pdf
    Specification of matrix h5 generated by https://github.com/masai1116/SHARE-seq-alignmentV2
    Jason Buenrostro, Broadfile format specification
    released
  • Document
    pLS-SceI.txt
    Plasmid map for pLS-SceI in genebank format
    Nadav Ahituv, UCSFplasmid map
    released
  • Document
    Gene counts table file format specification.pdf
    Gene counts table
    Charles Gersbach, Dukefile format specification
    released
  • Document
    Subpool_7_report.pdf
    UCI/Caltech IGVF dataset pipeline report for ali-mortazavi:IGVF_B01_subpool_7
    Ali Mortazavi, UCIplate map
    released
  • Document
    Protocol-H9-Differentiaton-to-Cortical-Neurons_ChahrourLab.pdf
    Stem Cell DIfferentiation Protocol
    Maria Chahrour, UTcell fate change protocol
    released
  • Document
    DESeq2 results file format specification HiCAR.pdf
    DESeq2 results
    Charles Gersbach, Dukefile format specification
    released