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103 items
UCI/Caltech IGVF dataset pipeline report for ali-mortazavi:IGVF_B01_subpool_6
plate map
released
ffc29f91-a54b-4cd0-8aed-e1c841ac2a41
  • daniel-bauer:mageck_variant_scores_file_format_spec
File format specification for per-variant scores produced by MAGeCK
file format specification
released
f30f1676-335b-4281-af7b-ca7955fc0cf3
IGVF MPRA reporter barcode experiment format
file format specification
released
efc0f977-860e-4a9e-a71f-84d2c6a666cc
  • charles-gersbach:AIO-hUBC-dSaCas9-2xVP64-2A-Thy1_1-plasmid-map
AIO-hUBC-dSaCas9-2xVP64-2A-Thy1.1 Map
plasmid map
released
ee0564e2-3d03-4c94-bcb3-39d2bbd2d588
  • gary-hon:NPC_Differentiation_Protocol_1
sgRNA for TF Perturb Seq Pilot NPCs
cell fate change protocol
preview
ede891cc-8cd3-4613-8cc4-da790ff50701
IGVF MPRA reporter experiment format
file format specification
released
eb0e09b3-8151-4a5d-bdde-b7b2b47cf4f6
  • jay-shendure:scQers_vector_pdf
Plasmid map for scQers vector pdf format
plasmid map
released
e90669ea-1311-43b1-952b-fc863c7898a5
  • hao-wu:protocol_scNT-seq_document_02
scNT-seq protocol
experimental protocol
released
e8947268-3ee0-450e-be65-cefa7f792a93
  • charles-gersbach:gene-counts-table-file-format-RNA
Gene counts table
file format specification
released
e74f7bee-7c62-4acb-b1f8-50160292c236
  • ansuman-satpathy:raw_rna_count_marix_format
Raw RNA count matrix definition for 10x multiome
file format specification
released
e18648f3-63a8-47e0-be86-2670f0cb68f0
  • buenrostro-bernstein:masai-shareseqv2-fragment-file-specification
Specification of fragment file generated by https://github.com/masai1116/SHARE-seq-alignmentV2
file format specification
released
df51876b-1c01-40e6-b68c-8b2342bbd8b6
UCI/Caltech IGVF dataset pipeline report for ali-mortazavi:IGVF_B01_subpool_2
plate map
released
de85427c-cb62-494e-8213-ef82cd71bfb7
  • jesse-engreitz:Addgene_TRE-KRAB-dCas9-IRES-BFP
Addgene Plasmid Map TRE-KRAB-dCas9-IRES-BFP
plasmid map
released
d8ce793f-933b-45ea-9611-1c3f80cb7e11
  • charles-gersbach:gene-counts-table-file-format-ATAC
Gene counts table
file format specification
released
d604ae54-e814-4a59-8523-eb2deb7f7841
  • jay-shendure:document_SPECTREtable_FFS_Chardon-McDiarmid
File format specification for SPECTRE tables
file format specification
released
d39cb34b-e078-41ef-85cd-c0cd1b8a9e36
Generation of HCT116-RAD21-mAID-mClover
experimental protocol
released
d2f1ed4f-d62a-471b-9e76-d5d8c77b072e
  • charles-gersbach:seurat-find-markers-mast-file-format
seurat FindMarkers mast results
file format specification
released
d298419c-50d3-43fc-97c0-e676fe182a27
  • charles-gersbach:hUBC-eGFP-BATF3-plasmid-map
hUBC 2A eGFP BATF3 Map
plasmid map
released
d25518aa-6bcb-43ce-a2f0-8d16f513ff0a
  • charles-gersbach:genomically-labeled-arrays-mcool
Contact matrix mcool files
file format specification
released
cb4a6813-68a9-4aff-af23-7d78a04dfc58
  • buenrostro-bernstein:masai-shareseqv2-matrix-specification
Specification of matrix h5 generated by https://github.com/masai1116/SHARE-seq-alignmentV2
file format specification
released
cae4f4ad-b937-4694-b5b7-028917c8dbab
Plasmid map for pLS-SceI in genebank format
plasmid map
released
c8235b91-3cd3-4ade-9185-ce2e9a64ae64
  • charles-gersbach:gene-counts-table-file-format
Gene counts table
file format specification
released
c79b81ec-d6e9-41e1-9417-519552cb64ce
UCI/Caltech IGVF dataset pipeline report for ali-mortazavi:IGVF_B01_subpool_7
plate map
released
c36e57a7-52c1-4dd1-a88b-c25655b3f216
  • nikhil-munshi:Neuronal_Differentiation_Protocol
Stem Cell DIfferentiation Protocol
cell fate change protocol
released
c314f30f-385f-4aea-a2b4-3edc4b973777
  • charles-gersbach:deseq2-results-file-format-HiCAR
DESeq2 results
file format specification
released
ba2ff6df-4a86-462f-9323-bd3db83dacc8