MAGeCK mapped counts generation step

UCI snRNA-seq Kallisto quantification step

BlueSTARR training and prediction step

Gersbach FACS CRISPR screen Differential Expression Analysis Step

scCRISPRa differential analysis step

Gersbach GGR RNA-seq Pipeline Quantification Step

CRISPR-BEAN mapped counts generation step

Count Matrix Generation Step

MPRAsnakeflow Assignment Step

scQer bulk MPRA element quantification step

Gersbach GGR RNA-seq Pipeline Signal Generation Step

Gersbach FACS CRISPR screen Alignment Step

HiCAR-quantification-step

HiCAR-cooler-generation step

Gersbach FACS CRISPR screen Quantification Step

SHARE-seq alignment v2 matrix generation step

UCI snRNA-seq counts normalization and filtering step

MPRAflow assignment step

MPRAsnakeflow mpralm Variant Annotation Step

Gersbach GGR ATAC-seq Pipeline Peak Generation Step

Satpathy Fragment Generation Step

MPRAnalyze Variant Annotation Step

Gersbach GGR ATAC-seq Pipeline Alignment Step

MAGeCK modeling step

MPRAsnakeflow Quantification Step