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Analysis Set Type

Assay Title

Uniformly Processed

Assembly

86 items
  • intermediate
    AnalysisSet
    IGVFDS9202ZPBI
    ATAC-seq: alignments
    Charles Gersbach, Duke
    Samples
    CD8-positive, alpha-beta memory T cell primary cell, transfected with a expression vector library
    released
  • intermediate
    AnalysisSet
    IGVFDS2296EFNK
    HiCAR: contact matrix
    Charles Gersbach, Duke
    Samples
    GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell, at 1 time point(s) post change, perturbed with treatment(s), transfected with a guide library
    released
  • principal
    AnalysisSet
    IGVFDS6344XBAV
    ATAC-seq: fold change over control, peak quantifications
    Charles Gersbach, Duke
    Samples
    CD8-positive, alpha-beta memory T cell primary cell, transfected with a expression vector library
    released
  • principal
    AnalysisSet
    IGVFDS0320JXJG
    CRISPR activation FACS screen targeting CCR7: fold change over control, guide quantifications
    Charles Gersbach, Duke
    Samples
    CD8-positive, alpha-beta memory T cell primary cell, modified with CRISPR modifications, transfected with a guide library, sorted on expression of CCR7
    released
  • intermediate
    AnalysisSet
    IGVFDS9608RUYZ
    HiCAR: contact matrix
    Charles Gersbach, Duke
    Samples
    GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell, at 1 time point(s) post change, perturbed with treatment(s), transfected with a guide library
    released
  • intermediate
    AnalysisSet
    IGVFDS8055FNVD
    HiCAR: contact matrix
    Charles Gersbach, Duke
    Samples
    GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell, at 1 time point(s) post change, transfected with a guide library
    released
  • intermediate
    AnalysisSet
    IGVFDS3159CKGQ
    HiCAR: contact matrix
    Charles Gersbach, Duke
    Samples
    HL-1 cell line, transfected with a guide library
    released
  • intermediate
    AnalysisSet
    IGVFDS4430NOFL
    knockout RNA-seq: transcriptome alignments
    Charles Gersbach, Duke
    Samples
    CD8-positive, alpha-beta memory T cell primary cell, modified with CRISPR modifications, transfected with a guide library
    released
  • principal
    AnalysisSet
    IGVFDS5056OAGR
    prime editing Variant-EFFECTS targeting PPIF: variant effects
    Jesse Engreitz, Stanford
    Samples
    THP-1 cell line, modified with CRISPR modifications, transfected with a guide library, sorted on expression of PPIF
    released
  • principal
    AnalysisSet
    IGVFDS2302NLIO
    ATAC-seq: fold change over control, peak quantifications
    Charles Gersbach, Duke
    Samples
    CD8-positive, alpha-beta memory T cell primary cell, transfected with a expression vector library
    released
  • intermediate
    AnalysisSet
    IGVFDS5322ZITQ
    HiCAR: contact matrix
    Charles Gersbach, Duke
    Samples
    GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell, at 1 time point(s) post change, transfected with a guide library
    released
  • principal
    AnalysisSet
    IGVFDS3461ZPPS
    RNA-seq: fold change over control, transcript quantifications
    Charles Gersbach, Duke
    Samples
    GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell, at 1 time point(s) post change, antagonized with treatment(s)
    released
  • intermediate
    AnalysisSet
    IGVFDS5478QWPN
    CRISPR activation FACS screen targeting IL2RA: alignments
    Charles Gersbach, Duke
    Samples
    Jurkat cell line, modified with CRISPR modifications, transfected with a guide library, sorted on expression of IL2RA
    released
  • intermediate
    AnalysisSet
    IGVFDS1013MILB
    ATAC-seq: alignments
    Charles Gersbach, Duke
    Samples
    CD8-positive, alpha-beta memory T cell primary cell, transfected with a expression vector library
    released
  • intermediate
    AnalysisSet
    IGVFDS4488GLKL
    CRISPR activation FACS screen targeting CCR7: alignments
    Charles Gersbach, Duke
    Samples
    CD8-positive, alpha-beta memory T cell primary cell, modified with CRISPR modifications, transfected with a guide library, sorted on expression of CCR7
    released
  • principal
    AnalysisSet
    IGVFDS7196OWBU
    CRISPR activation FACS screen targeting IL2RA: fold change over control, guide quantifications
    Charles Gersbach, Duke
    Samples
    Jurkat cell line, modified with CRISPR modifications, transfected with a guide library, sorted on expression of IL2RA
    released
  • intermediate
    AnalysisSet
    IGVFDS7944XZYE
    CRISPR knockout FACS screen targeting IL7R: alignments
    Charles Gersbach, Duke
    Samples
    CD8-positive, alpha-beta memory T cell primary cell, modified with CRISPR modifications, transfected with a guide library, sorted on expression of IL7R
    released
  • principal
    AnalysisSet
    IGVFDS7801YPEU
    scATAC-seq: fragments, peaks, signal, sparse peak count matrix
    Jay Shendure, UW
    Samples
    mouse embryonic stem cell differentiated cell specimen induced to embryoid body, at 1 time point(s) post change
    released
  • principal
    AnalysisSet
    IGVFDS7797WATU
    HiCAR: bin paired count, differential chromatin contact quantifications
    Charles Gersbach, Duke
    Samples
    GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell, at 1 time point(s) post change, perturbed with treatment(s), transfected with a guide library
    released
  • principal
    AnalysisSet
    IGVFDS4021XJLW
    scCRISPR activation screen: differential gene expression quantifications, sparse gene count matrix
    Jay Shendure, UW
    Samples
    GM25256 (WTC-11) differentiated cell specimen induced to neuron, at 1 time point(s) post change, modified with CRISPR modifications, transfected with a guide library
    released
  • principal
    AnalysisSet
    IGVFDS9053MHCS
    CRISPR interference FlowFISH screen targeting TLNRD1
    Jesse Engreitz, Stanford
    Samples
    TeloHAEC cell line, modified with CRISPR modifications, transfected with a guide library, sorted on expression of TLNRD1
    released
  • intermediate
    AnalysisSet
    IGVFDS7841JHCX
    HiCAR: contact matrix
    Charles Gersbach, Duke
    Samples
    GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell, at 1 time point(s) post change, transfected with a guide library
    released
  • intermediate
    AnalysisSet
    IGVFDS0006MFFD
    knockout RNA-seq: transcriptome alignments
    Charles Gersbach, Duke
    Samples
    CD8-positive, alpha-beta memory T cell primary cell, modified with CRISPR modifications, transfected with a guide library
    released
  • intermediate
    AnalysisSet
    IGVFDS4526ROPM
    HiCAR: contact matrix
    Charles Gersbach, Duke
    Samples
    GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell, at 1 time point(s) post change, transfected with a guide library
    released
  • principal
    AnalysisSet
    IGVFDS9906UGWB
    knockout RNA-seq: fold change over control, transcript quantifications
    Charles Gersbach, Duke
    Samples
    CD8-positive, alpha-beta memory T cell primary cell, modified with CRISPR modifications, transfected with a guide library
    released