IGVFDS0257SDNV

archived

File Set Type

functional effect

Summary

functional effect prediction on scope of loci

Description

Predictions of mutation effect at every base in ENCODE cCREs across hg38.

Scope

loci

Large Scale Loci List

Aliases

andrew-allen:bluestarr-prediction-set-v3

Submitter Comment

This prediction set is superseded by IGVFDS2340WJRV, which is from a newer version of BlueSTARR.

Attribution

Bill Majoros, Duke

(

HG011967 — Andrew Allen

)

Files

2 items

bed

variant effects

GRCh38 predictive filtered variant effects

Bill Majoros, Duke

58 MB

filtered

validated

bed

variant effects

GRCh38 predictive variant effects

Bill Majoros, Duke

1.8 GB

validated

File Association Graph

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File Set

File

CuratedSet

ModelSet

PredictionSet

Samples

1 item

Accession

Type

Sample Terms

Associated Construct Library Sets

Summary

InVitroSystem

virtual Homo sapiens (female) K562 cell line

Input File Sets

2 items

ModelSet

BlueSTARR-K562 v0.1.0 neural network predicting regulatory elements

andrew-allen:bluestarr-k562-model
bill-majoros:bluestarr-k562-model

Bill Majoros, Duke

CuratedSet

Homo sapiens GRCh38 elements

igvf:cCREs

ENCODE Project, NHGRI