Click and hold a term momentarily to select items without that term.

Analysis Set Type

Assay Title

Uniformly Processed

Assembly

86 items
IGVFDS9202ZPBI
  • charles-gersbach:cd8-tcells-intermediate-set-atac-seq-chronic-activation-batf3
intermediate analysis
CD8-positive, alpha-beta memory T cell primary cell, transfected with a expression vector library
released
ATAC-seq: alignments
Homo sapiens
fdbe1d71-d4b0-4025-a01e-46b963a45785
IGVFDS2296EFNK
  • charles-gersbach:analysis-set-crispra-region3-1umET1-ipsc-cm-targeted-hicar-rep2-cool
intermediate analysis
GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell, at 1 time point(s) post change, perturbed with treatment(s), transfected with a guide library
released
HiCAR: contact matrix
Homo sapiens
fd37c4f1-7481-416f-a99d-3810404afa51
IGVFDS6344XBAV
  • charles-gersbach:cd8-tcells-analysis-set-atac-seq-chronic-activation-batf3
principal analysis
CD8-positive, alpha-beta memory T cell primary cell, transfected with a expression vector library
released
ATAC-seq: fold change over control, peak quantifications
Homo sapiens
fcdc0263-c1e7-4ba0-87ba-5bcbfef7461c
IGVFDS0320JXJG
  • charles-gersbach:cd8-tcells-analysis-set-crispra-ccr7
principal analysis
CD8-positive, alpha-beta memory T cell primary cell, modified with CRISPR modifications, transfected with a guide library, sorted on expression of CCR7
released
CRISPR activation FACS screen targeting CCR7: fold change over control, guide quantifications
Homo sapiens
f42d6b34-7961-4abb-be67-24603b5792dc
IGVFDS9608RUYZ
  • charles-gersbach:analysis-set-crispra-region3-1umET1-ipsc-cm-targeted-hicar-rep1-cool
intermediate analysis
GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell, at 1 time point(s) post change, perturbed with treatment(s), transfected with a guide library
released
HiCAR: contact matrix
Homo sapiens
e6e24779-3679-443c-b761-a663b5618862
IGVFDS8055FNVD
  • charles-gersbach:analysis-set-crispra-control-0umETt1-ipsc-cm-targeted-hicar-rep2-cool
intermediate analysis
GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell, at 1 time point(s) post change, transfected with a guide library
released
HiCAR: contact matrix
Homo sapiens
e5bec1e9-fe5f-4827-92a8-4682b18e77a3
IGVFDS3159CKGQ
  • charles-gersbach:analysis-set-crispra-region3-mouse-hl1-targeted-hicar-rep1-cool
intermediate analysis
HL-1 cell line, transfected with a guide library
released
HiCAR: contact matrix
Mus musculus
e49c7bc7-f2bb-4804-9686-67d7cba547e1
IGVFDS4430NOFL
  • charles-gersbach:cd8-tcells-intermediate-analysis-rna-seq-cas-ko-znf217
intermediate analysis
CD8-positive, alpha-beta memory T cell primary cell, modified with CRISPR modifications, transfected with a guide library
released
knockout RNA-seq: transcriptome alignments
Homo sapiens
dff2d881-73ed-413d-888f-11c0015c09cd
IGVFDS5056OAGR
  • jesse-engreitz:PPIF_promoter_8mer_insertion_THP1_Variant-FlowFISH_analysis
principal analysis
/measurement-sets/IGVFDS5714UWEJ/, /measurement-sets/IGVFDS6473LUNY/, /measurement-sets/IGVFDS7093IAOE/, /measurement-sets/IGVFDS5910HARH/, /measurement-sets/IGVFDS2504PFZO/, /measurement-sets/IGVFDS4945KDNO/, /measurement-sets/IGVFDS8032KCGK/, /measurement-sets/IGVFDS6385JXFZ/, /measurement-sets/IGVFDS6859ZHTQ/, /measurement-sets/IGVFDS6731AKUS/, /measurement-sets/IGVFDS8138GVAT/, /measurement-sets/IGVFDS7472ZHUE/, /measurement-sets/IGVFDS4371VPAL/, /measurement-sets/IGVFDS4043NWWM/, /measurement-sets/IGVFDS7434URBG/, /measurement-sets/IGVFDS3964BHOX/, /measurement-sets/IGVFDS7400NQET/, /measurement-sets/IGVFDS9818UYJH/, /measurement-sets/IGVFDS0126OPKX/, /measurement-sets/IGVFDS5374LMRK/, /measurement-sets/IGVFDS0735XAQF/, /measurement-sets/IGVFDS6066LBCV/, /measurement-sets/IGVFDS4786QNDV/, /measurement-sets/IGVFDS1293ORGQ/, /measurement-sets/IGVFDS2641ALJQ/, /measurement-sets/IGVFDS3845OXSE/, /measurement-sets/IGVFDS9920OIUA/, /measurement-sets/IGVFDS9276HGOM/, /measurement-sets/IGVFDS7692AEEW/, /measurement-sets/IGVFDS3442RJBW/, /measurement-sets/IGVFDS7205UOTV/, /measurement-sets/IGVFDS6498KFQL/, /measurement-sets/IGVFDS5416ECKJ/, /measurement-sets/IGVFDS1711PRHO/, /measurement-sets/IGVFDS3198NALA/, /measurement-sets/IGVFDS8377HOWJ/, /measurement-sets/IGVFDS1482MIEF/, /measurement-sets/IGVFDS1696YMUM/, /measurement-sets/IGVFDS5937NTSM/, /measurement-sets/IGVFDS9844CWDW/, /measurement-sets/IGVFDS0634BYKS/, /measurement-sets/IGVFDS6214RDRM/, /measurement-sets/IGVFDS2963KTVM/, /measurement-sets/IGVFDS9444IQCJ/, /measurement-sets/IGVFDS4722YXGE/, /measurement-sets/IGVFDS5439ZLTA/, /measurement-sets/IGVFDS3243KYES/, /measurement-sets/IGVFDS6880HZFB/, /measurement-sets/IGVFDS0881DJJG/, /measurement-sets/IGVFDS2067RNFB/, /measurement-sets/IGVFDS6112CFBJ/, /measurement-sets/IGVFDS2167TBGK/, /measurement-sets/IGVFDS0182ZKUF/, /measurement-sets/IGVFDS3659HSOV/, /measurement-sets/IGVFDS5961WERM/, /measurement-sets/IGVFDS9005ISSR/, /measurement-sets/IGVFDS3899ANMJ/, /measurement-sets/IGVFDS6756WKPU/, /measurement-sets/IGVFDS6538ISBQ/, /measurement-sets/IGVFDS5927FYNR/, /measurement-sets/IGVFDS7530NWPC/, /measurement-sets/IGVFDS6624WHBQ/, /measurement-sets/IGVFDS8949ZDBE/, /measurement-sets/IGVFDS4701EMZA/, /measurement-sets/IGVFDS0300ELGK/, /measurement-sets/IGVFDS7365REMW/, /measurement-sets/IGVFDS0968GSSQ/, /measurement-sets/IGVFDS8067PUZX/, /measurement-sets/IGVFDS3851CVMG/, /measurement-sets/IGVFDS2443IKFM/, /measurement-sets/IGVFDS0592EWPO/, /measurement-sets/IGVFDS5001PJTX/, /measurement-sets/IGVFDS0286JWIW/, /measurement-sets/IGVFDS6367YJDA/, /measurement-sets/IGVFDS0410OHWU/, /measurement-sets/IGVFDS4716SNKJ/, /measurement-sets/IGVFDS5585HGSK/, /measurement-sets/IGVFDS8830XMQR/
THP-1 cell line, modified with CRISPR modifications, transfected with a guide library, sorted on expression of PPIF
/in-vitro-systems/IGVFSM9337QVAD/, /in-vitro-systems/IGVFSM6376JXGZ/, /in-vitro-systems/IGVFSM2043RUDS/, /in-vitro-systems/IGVFSM7338BXZP/, /in-vitro-systems/IGVFSM4555JSOF/, /in-vitro-systems/IGVFSM1989ECAN/, /in-vitro-systems/IGVFSM1018AFSU/, /in-vitro-systems/IGVFSM0787QFVT/, /in-vitro-systems/IGVFSM0075VGTB/, /in-vitro-systems/IGVFSM8988WXEB/, /in-vitro-systems/IGVFSM9994CSTP/, /in-vitro-systems/IGVFSM0046YFNI/, /in-vitro-systems/IGVFSM1994AWYG/, /in-vitro-systems/IGVFSM2522SXJT/, /in-vitro-systems/IGVFSM2812NEWC/, /in-vitro-systems/IGVFSM9808CICG/, /in-vitro-systems/IGVFSM4973WSEU/, /in-vitro-systems/IGVFSM8224ZLFH/, /in-vitro-systems/IGVFSM0863WEQJ/, /in-vitro-systems/IGVFSM1309CTNL/, /in-vitro-systems/IGVFSM7602FHUT/, /in-vitro-systems/IGVFSM2895VEVU/, /in-vitro-systems/IGVFSM8384KCKA/, /in-vitro-systems/IGVFSM0320EORI/, /in-vitro-systems/IGVFSM9849CZIJ/, /in-vitro-systems/IGVFSM6928KZFH/, /in-vitro-systems/IGVFSM2582ALNT/, /in-vitro-systems/IGVFSM5557UHMD/, /in-vitro-systems/IGVFSM9472SJJU/, /in-vitro-systems/IGVFSM1683BAMH/, /in-vitro-systems/IGVFSM0701VWIZ/, /in-vitro-systems/IGVFSM8972CLRU/, /in-vitro-systems/IGVFSM3490JPYE/, /in-vitro-systems/IGVFSM9690YXEE/, /in-vitro-systems/IGVFSM1400DZMP/, /in-vitro-systems/IGVFSM7075GWHP/, /in-vitro-systems/IGVFSM1218VKDC/, /in-vitro-systems/IGVFSM6445TGKO/, /in-vitro-systems/IGVFSM3596XEKI/, /in-vitro-systems/IGVFSM7879WOKC/, /in-vitro-systems/IGVFSM2216EFEX/, /in-vitro-systems/IGVFSM0591ZRYW/, /in-vitro-systems/IGVFSM8173RIRG/, /in-vitro-systems/IGVFSM0595JWOO/, /in-vitro-systems/IGVFSM1041JPLJ/, /in-vitro-systems/IGVFSM3062EIHZ/, /in-vitro-systems/IGVFSM8470FMQN/, /in-vitro-systems/IGVFSM3056BTTL/, /in-vitro-systems/IGVFSM9746ERJH/, /in-vitro-systems/IGVFSM9316MGHL/, /in-vitro-systems/IGVFSM7846WBRV/, /in-vitro-systems/IGVFSM7066SDHY/, /in-vitro-systems/IGVFSM1757XEWZ/, /in-vitro-systems/IGVFSM3254FGUG/, /in-vitro-systems/IGVFSM1388TFMJ/, /in-vitro-systems/IGVFSM0226JSRH/, /in-vitro-systems/IGVFSM4295RBJG/, /in-vitro-systems/IGVFSM6375ITVK/, /in-vitro-systems/IGVFSM0994FYUT/, /in-vitro-systems/IGVFSM5063WIJW/, /in-vitro-systems/IGVFSM9821UQTT/, /in-vitro-systems/IGVFSM7667TLNR/, /in-vitro-systems/IGVFSM0583RNTC/, /in-vitro-systems/IGVFSM8276OEZZ/, /in-vitro-systems/IGVFSM1355ITKK/, /in-vitro-systems/IGVFSM1036VGPE/, /in-vitro-systems/IGVFSM1606JQTG/, /in-vitro-systems/IGVFSM4143IEHE/, /in-vitro-systems/IGVFSM1147YJAE/, /in-vitro-systems/IGVFSM8604RBAL/, /in-vitro-systems/IGVFSM9234DKCR/, /in-vitro-systems/IGVFSM1133ETJG/, /in-vitro-systems/IGVFSM8189JDTX/, /in-vitro-systems/IGVFSM4767DNSQ/, /in-vitro-systems/IGVFSM0484FSRU/, /in-vitro-systems/IGVFSM8920YWJY/, /in-vitro-systems/IGVFSM3814ESVL/, /in-vitro-systems/IGVFSM3137EVKW/
released
prime editing Variant-EFFECTS targeting PPIF: variant effects
Homo sapiens
dea7577f-6bac-4753-b75e-794685cfd73e
IGVFDS2302NLIO
  • charles-gersbach:cd8-tcells-analysis-set-atac-seq-acute-activation-batf3
principal analysis
CD8-positive, alpha-beta memory T cell primary cell, transfected with a expression vector library
released
ATAC-seq: fold change over control, peak quantifications
Homo sapiens
dddf113e-e357-4ec4-bb4f-ab705219db19
IGVFDS5322ZITQ
  • charles-gersbach:analysis-set-crispri-region3-ipsc-cm-targeted-hicar-rep2-cool
intermediate analysis
GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell, at 1 time point(s) post change, transfected with a guide library
released
HiCAR: contact matrix
Homo sapiens
db79f292-8b32-48cb-a449-90abda6f7a75
IGVFDS3461ZPPS
  • charles-gersbach:analysis-set-bulk-rna-DEanalysis
principal analysis
GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell, at 1 time point(s) post change, antagonized with treatment(s)
released
RNA-seq: fold change over control, transcript quantifications
Homo sapiens
d4ff7830-a109-489d-9522-1a20cf97281f
IGVFDS5478QWPN
  • charles-gersbach:jurkats-intermediate-analysis-crispra-vp64-il2ra
intermediate analysis
Jurkat cell line, modified with CRISPR modifications, transfected with a guide library, sorted on expression of IL2RA
released
CRISPR activation FACS screen targeting IL2RA: alignments
Homo sapiens
d4e70a0f-f071-4b8e-abe4-0fdc2515d72d
IGVFDS1013MILB
  • charles-gersbach:cd8-tcells-intermediate-set-atac-seq-acute-activation-batf3
intermediate analysis
CD8-positive, alpha-beta memory T cell primary cell, transfected with a expression vector library
released
ATAC-seq: alignments
Homo sapiens
cbbc4619-f9a7-4299-a027-a8ce786a0ebf
IGVFDS4488GLKL
  • charles-gersbach:cd8-tcells-intermediate-analysis-crispra-ccr7
intermediate analysis
CD8-positive, alpha-beta memory T cell primary cell, modified with CRISPR modifications, transfected with a guide library, sorted on expression of CCR7
released
CRISPR activation FACS screen targeting CCR7: alignments
Homo sapiens
cb6bfc95-81ab-4c2e-9fa5-a0b8ddbeb1dd
IGVFDS7196OWBU
  • charles-gersbach:jurkats-analysis-set-crispra-vp64x2-il2ra
principal analysis
Jurkat cell line, modified with CRISPR modifications, transfected with a guide library, sorted on expression of IL2RA
released
CRISPR activation FACS screen targeting IL2RA: fold change over control, guide quantifications
Homo sapiens
c9f8cd5c-a95e-4d84-a5d6-92ad2c1f5f6d
IGVFDS7944XZYE
  • charles-gersbach:cd8-tcells-intermediate-analysis-crispr-ko-tfome-batf3-over
intermediate analysis
CD8-positive, alpha-beta memory T cell primary cell, modified with CRISPR modifications, transfected with a guide library, sorted on expression of IL7R
released
CRISPR knockout FACS screen targeting IL7R: alignments
Homo sapiens
c9181de6-0db8-4056-a95d-030bb2a5b02d
IGVFDS7801YPEU
  • jay-shendure:analysis_set_scATAC_mEBs
principal analysis
mouse embryonic stem cell differentiated cell specimen induced to embryoid body, at 1 time point(s) post change
released
scATAC-seq: fragments, peaks, signal, sparse peak count matrix
Mus musculus
c69d7cb4-f432-4b38-b99c-7233b7d96af5
IGVFDS7797WATU
  • charles-gersbach:analysis-set-crispra-stim-NT-region3-DEanalysis
principal analysis
GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell, at 1 time point(s) post change, perturbed with treatment(s), transfected with a guide library
released
HiCAR: bin paired count, differential chromatin contact quantifications
Homo sapiens
c56f21ea-1aab-4b82-baba-0762ca7eb6fa
IGVFDS4021XJLW
  • jay-shendure:analysis_set_CRISPRa_ipscNeurons
principal analysis
GM25256 (WTC-11) differentiated cell specimen induced to neuron, at 1 time point(s) post change, modified with CRISPR modifications, transfected with a guide library
released
scCRISPR activation screen: differential gene expression quantifications, sparse gene count matrix
Homo sapiens
c54949f6-6673-4a8e-a213-5cb972f23dea
IGVFDS9053MHCS
  • jesse-engreitz:analysis_set_eRZ10_teloHAEC_TLNRD1_enhancer_CRISPRi_FlowFISH_analysis
principal analysis
TeloHAEC cell line, modified with CRISPR modifications, transfected with a guide library, sorted on expression of TLNRD1
released
CRISPR interference FlowFISH screen targeting TLNRD1
Homo sapiens
c38ce05d-b4a3-4d3e-bf38-b9c8828ef22e
IGVFDS7841JHCX
  • charles-gersbach:analysis-set-crispri-region3-ipsc-cm-targeted-hicar-rep1-cool
intermediate analysis
GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell, at 1 time point(s) post change, transfected with a guide library
released
HiCAR: contact matrix
Homo sapiens
c2f08bd2-6ae7-45cd-b57a-f034913416be
IGVFDS0006MFFD
  • charles-gersbach:cd8-tcells-intermediate-analysis-rna-seq-cas-ko-gata3
intermediate analysis
CD8-positive, alpha-beta memory T cell primary cell, modified with CRISPR modifications, transfected with a guide library
released
knockout RNA-seq: transcriptome alignments
Homo sapiens
c10bcb2b-b7a3-47a2-b515-617df0549089
IGVFDS4526ROPM
  • charles-gersbach:analysis-set-crispra-control-0umETt1-ipsc-cm-targeted-hicar-rep1-cool
intermediate analysis
GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell, at 1 time point(s) post change, transfected with a guide library
released
HiCAR: contact matrix
Homo sapiens
c0f146e9-e2cc-4a1b-af1a-c8acbccbadbd
IGVFDS9906UGWB
  • charles-gersbach:cd8-tcells-analysis-set-rna-seq-cas-ko-znf217
principal analysis
CD8-positive, alpha-beta memory T cell primary cell, modified with CRISPR modifications, transfected with a guide library
released
knockout RNA-seq: fold change over control, transcript quantifications
Homo sapiens
bd513393-12b9-40a3-b24f-d528d7f8dc24