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INDEXED
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/
MeasurementSet
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IGVFDS9774FVTL
IGVFDS9774FVTL
released
Json view
File Set Type
experimental data
Summary
single-cell ATAC-seq (SHARE-seq)
Assay Term
single-cell ATAC-seq
Sample Summaries
Homo sapiens (female, 19 years) bone marrow cell (cellular sub pool: SS-PKR 4)
Protocols
https://www.protocols.io/view/share-seq-v1-bmbik2ke
Aliases
bradley-bernstein:scATAC Lib 20
buenrostro-bernstein:scATAC Lib 20
Attribution
Jason Buenrostro, Broad
(
HG011986
—
Jason Buenrostro
)
Sequencing Results (Illumina)
16 items
1
2
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Read Names
Associated seqspec Files
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI0005YBIF
fastq
reads
R2
2371
Illumina NovaSeq 6000
696 MB
Jason Buenrostro, Broad
validated
IGVFFI1196DJOY
fastq
reads
R2
2563
Illumina NovaSeq 6000
688 MB
Jason Buenrostro, Broad
validated
IGVFFI1256YSDP
fastq
reads
R2
2275
Illumina NovaSeq 6000
693 MB
Jason Buenrostro, Broad
validated
IGVFFI1395JBCP
fastq
reads
R2
1605
Illumina NovaSeq 6000
1.8 KB
Jason Buenrostro, Broad
validated
IGVFFI1456APEU
fastq
reads
R1
1509
Illumina NovaSeq 6000
1.1 KB
Jason Buenrostro, Broad
validated
IGVFFI3437SZJL
fastq
reads
R1
1413
Illumina NovaSeq 6000
1.1 KB
Jason Buenrostro, Broad
validated
IGVFFI4727EMRY
fastq
reads
R1
2467
Illumina NovaSeq 6000
411 MB
Jason Buenrostro, Broad
validated
IGVFFI5026OJQK
fastq
reads
R1
1605
Illumina NovaSeq 6000
1.1 KB
Jason Buenrostro, Broad
validated
IGVFFI5876NMTJ
fastq
reads
R1
1701
Illumina NovaSeq 6000
1.1 KB
Jason Buenrostro, Broad
validated
IGVFFI6203ZRZA
fastq
reads
R2
1509
Illumina NovaSeq 6000
2.0 KB
Jason Buenrostro, Broad
validated
Samples
1 item
Accession
Type
Sample Terms
Associated Construct Library Sets
Summary
IGVFSM1964TYMX
PrimaryCell
bone marrow
Homo sapiens (female, 19 years) bone marrow cell (cellular sub pool: SS-PKR 4)
Donors
1 item
Accession
Aliases
Sex
Taxa
IGVFDO2605CUSL
bradley-bernstein:Donor 1508
buenrostro-bernstein:Donor 1508
female
Homo sapiens
File Sets Using This Measurement Set as an Input
1 item
Accession
Type
Summary
Aliases
Lab
IGVFDS5278IBSB
AnalysisSet
SHARE-seq: fragments, sparse gene count matrix
buenrostro-bernstein:human-bone-marrow-analysis-set
Jason Buenrostro, Broad
Related Multiome Datasets
1 item
Accession
Type
Summary
Aliases
Lab
IGVFDS7166DZRK
MeasurementSet
single-cell RNA sequencing assay (SHARE-seq)
bradley-bernstein:scRNA Lib 20
buenrostro-bernstein:scRNA Lib 20
Jason Buenrostro, Broad