{
"@context": "/terms/",
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"@type": [
"MeasurementSet",
"FileSet",
"Item"
],
"accession": "IGVFDS9774FVTL",
"aliases": [
"bradley-bernstein:scATAC Lib 20",
"buenrostro-bernstein:scATAC Lib 20"
],
"assay_term": {
"@id": "/assay-terms/OBI_0002764/",
"status": "released",
"term_name": "single-cell ATAC-seq"
},
"audit": {
"INTERNAL_ACTION": [
{
"category": "missing sequence specification",
"detail": "Measurement set [IGVFDS9774FVTL](/measurement-sets/IGVFDS9774FVTL/) has sequence file(s): [IGVFFI6203ZRZA](/sequence-files/IGVFFI6203ZRZA/), [IGVFFI5876NMTJ](/sequence-files/IGVFFI5876NMTJ/), [IGVFFI6996ZYHH](/sequence-files/IGVFFI6996ZYHH/), [IGVFFI0005YBIF](/sequence-files/IGVFFI0005YBIF/), [IGVFFI5026OJQK](/sequence-files/IGVFFI5026OJQK/), [IGVFFI1256YSDP](/sequence-files/IGVFFI1256YSDP/), [IGVFFI7212KYYB](/sequence-files/IGVFFI7212KYYB/), [IGVFFI4727EMRY](/sequence-files/IGVFFI4727EMRY/), [IGVFFI3437SZJL](/sequence-files/IGVFFI3437SZJL/), [IGVFFI1456APEU](/sequence-files/IGVFFI1456APEU/), [IGVFFI9826BQKE](/sequence-files/IGVFFI9826BQKE/), [IGVFFI1395JBCP](/sequence-files/IGVFFI1395JBCP/), [IGVFFI7426FOXH](/sequence-files/IGVFFI7426FOXH/), [IGVFFI7408ZYNE](/sequence-files/IGVFFI7408ZYNE/), [IGVFFI1196DJOY](/sequence-files/IGVFFI1196DJOY/), [IGVFFI9196ATNF](/sequence-files/IGVFFI9196ATNF/) which do not have any `seqspecs`. Sequence files in a file set are expected to link to a sequence specification file.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_missing_seqspec",
"path": "/measurement-sets/IGVFDS9774FVTL/"
},
{
"category": "mismatched status",
"detail": "Released primary cell [IGVFSM1964TYMX](/primary-cells/IGVFSM1964TYMX/) has in progress subobject source [jason-buenrostro](/sources/jason-buenrostro/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/primary-cells/IGVFSM1964TYMX/"
}
],
"WARNING": [
{
"category": "missing barcode onlist",
"detail": "Measurement set [IGVFDS9774FVTL](/measurement-sets/IGVFDS9774FVTL/) has an `assay_term` of single-cell ATAC-seq but no `onlist_files` nor `onlist_methods`. Measurement sets to be processed via the single cell uniform pipeline are expected to have onlist files and onlist methods indicated.",
"level": 40,
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"name": "audit_onlist",
"path": "/measurement-sets/IGVFDS9774FVTL/"
}
]
},
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},
"title": "A foundational resource of functional elements, TF footprints and gene regulatory interactions"
},
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],
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0002371/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"status": "released",
"summary": "bone marrow",
"term_name": "bone marrow"
}
],
"status": "released",
"summary": "bone marrow cell (cellular sub pool: SS-PKR 4), female, Homo sapiens (19 years)",
"taxa": "Homo sapiens"
}
],
"schema_version": "23",
"status": "released",
"submitted_by": {
"@id": "/users/c0838247-5022-46cf-a8fa-426e73bf4c94/",
"title": "Siddarth Wekhande"
},
"submitted_files_timestamp": "2024-02-12T21:25:23.776455+00:00",
"summary": "single-cell ATAC-seq (SHARE-seq)",
"uuid": "907f62b6-fbe8-4415-ab38-a663130de508"
}