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IGVFDS9706CAUA

released
File Set Type
experimental data
Summary
Parse SPLiT-seq
Assay Term
single-nucleus RNA sequencing assay
Sample Summaries
  • multiplexed sample: Mus musculus NZO/H1LtJ (male, 69 days) left hippocampal formation tissue; Mus musculus 129S1J (male, 72 days) left hippocampal formation tissue; ... and 190 more samples
Protocols
Aliases
ali-mortazavi:003_67B_illumina
Attribution
Ali Mortazavi, UCI

Sequencing Results (Illumina)

18 items
Read Names
fastq
reads
R1
1
Read 1
HKMGCDSX5
1
10 GB
Ali Mortazavi, UCI
validated
fastq
reads
R1
7
Read 1
HJ73MDSX5
3
11 GB
Ali Mortazavi, UCI
validated
fastq
reads
R2
1
Read 2
HKMGCDSX5
1
5.4 GB
Ali Mortazavi, UCI
validated
fastq
reads
R1
8
Read 1
HJ73MDSX5
4
11 GB
Ali Mortazavi, UCI
validated
fastq
reads
R1
5
Read 1
HJ73MDSX5
1
11 GB
Ali Mortazavi, UCI
validated
fastq
reads
R2
2
Read 2
HKMGCDSX5
2
5.4 GB
Ali Mortazavi, UCI
validated
fastq
reads
R2
6
Read 2
HJ73MDSX5
2
5.3 GB
Ali Mortazavi, UCI
validated
fastq
reads
R1
6
Read 1
HJ73MDSX5
2
11 GB
Ali Mortazavi, UCI
validated
fastq
reads
R1
2
Read 1
HKMGCDSX5
2
10 GB
Ali Mortazavi, UCI
validated
fastq
reads
R2
9
Read 2
AAATMGFHV
29 GB
Ali Mortazavi, UCI
validated

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Associated Construct Library Sets
Summary
MultiplexedSample
multiplexed sample: Mus musculus NZO/H1LtJ (male, 69 days) left hippocampal formation tissue; Mus musculus 129S1J (male, 72 days) left hippocampal formation tissue; ... and 190 more samples

Donors

65 items
Aliases
  • ali-mortazavi:018_B6J_10F
female
Mus musculus
  • ali-mortazavi:041_129S1J_10M
male
Mus musculus
  • ali-mortazavi:030_AJ_10F
female
Mus musculus
  • ali-mortazavi:052_NZOJ_10F
female
Mus musculus
  • ali-mortazavi:057_WSBJ_10M
male
Mus musculus
  • ali-mortazavi:080_PWKJ_10F
female
Mus musculus
  • ali-mortazavi:069_NODJ_10M
male
Mus musculus
  • ali-mortazavi:058_WSBJ_10F
female
Mus musculus
  • ali-mortazavi:035_AJ_10M
male
Mus musculus
  • ali-mortazavi:088_CASTJ_10F
female
Mus musculus

Assay Details

Sequencing Library Types
mRNA enriched

File Sets Using This Measurement Set as an Input

1 item
Accession
Type
Summary
Aliases
Lab
AnalysisSet
Parse SPLiT-seq: sparse gene count matrix
  • ali-mortazavi:igvf_003_Subpool_3_total+core
Ali Mortazavi, UCI