IGVFDS9477ARWI

released
{
    "@context": "/terms/",
    "@id": "/measurement-sets/IGVFDS9477ARWI/",
    "@type": [
        "MeasurementSet",
        "FileSet",
        "Item"
    ],
    "accession": "IGVFDS9477ARWI",
    "aliases": [
        "jesse-engreitz:220829_8merInsertion-Jurkat_NoStimulation-Amp_PPIF_promoter-Jurkat-PE2_Exp1_NegControl_AmpliconSequencing",
        "jesse-engreitz:220829_8merInsertion-Jurkat_Stimulation-Amp_PPIF_promoter-Jurkat-PE2_Exp1_NegControl_AmpliconSequencing"
    ],
    "assay_term": {
        "@id": "/assay-terms/OBI_0003661/",
        "status": "released",
        "term_name": "in vitro CRISPR screen using flow cytometry"
    },
    "audit": {
        "INTERNAL_ACTION": [
            {
                "category": "missing sequencing kit",
                "detail": "Measurement set [IGVFDS9477ARWI](/measurement-sets/IGVFDS9477ARWI/) has sequence file(s) [IGVFFI0832CCKT](/sequence-files/IGVFFI0832CCKT/), [IGVFFI8894RMLM](/sequence-files/IGVFFI8894RMLM/), [IGVFFI8971BVSI](/sequence-files/IGVFFI8971BVSI/), [IGVFFI5538RVTT](/sequence-files/IGVFFI5538RVTT/), [IGVFFI5433SHDH](/sequence-files/IGVFFI5433SHDH/), [IGVFFI7540STAN](/sequence-files/IGVFFI7540STAN/), [IGVFFI6513PEVP](/sequence-files/IGVFFI6513PEVP/), [IGVFFI9717ZHUD](/sequence-files/IGVFFI9717ZHUD/) which lack specification of a `sequencing_kit`. Sequence files should specify a sequencing kit.",
                "level": 30,
                "level_name": "INTERNAL_ACTION",
                "name": "audit_inconsistent_sequencing_kit",
                "path": "/measurement-sets/IGVFDS9477ARWI/"
            },
            {
                "category": "missing sequence specification",
                "detail": "Measurement set [IGVFDS9477ARWI](/measurement-sets/IGVFDS9477ARWI/) has sequence file(s): [IGVFFI0832CCKT](/sequence-files/IGVFFI0832CCKT/), [IGVFFI8894RMLM](/sequence-files/IGVFFI8894RMLM/), [IGVFFI8971BVSI](/sequence-files/IGVFFI8971BVSI/), [IGVFFI5538RVTT](/sequence-files/IGVFFI5538RVTT/), [IGVFFI5433SHDH](/sequence-files/IGVFFI5433SHDH/), [IGVFFI7540STAN](/sequence-files/IGVFFI7540STAN/), [IGVFFI6513PEVP](/sequence-files/IGVFFI6513PEVP/), [IGVFFI9717ZHUD](/sequence-files/IGVFFI9717ZHUD/) which do not have any `seqspecs`. Sequence files in a file set are expected to link to a sequence specification file.",
                "level": 30,
                "level_name": "INTERNAL_ACTION",
                "name": "audit_missing_seqspec",
                "path": "/measurement-sets/IGVFDS9477ARWI/"
            }
        ],
        "WARNING": [
            {
                "category": "missing auxiliary set",
                "detail": "Measurement set [IGVFDS9477ARWI](/measurement-sets/IGVFDS9477ARWI/) has no cell sorting `auxiliary_sets`. CRISPR-based measurement sets that utilize flow cytometry are expected to link to a cell sorting auxiliary set.",
                "level": 40,
                "level_name": "WARNING",
                "name": "audit_missing_auxiliary_set",
                "path": "/measurement-sets/IGVFDS9477ARWI/"
            },
            {
                "category": "missing targeted genes",
                "detail": "Measurement set [IGVFDS9477ARWI](/measurement-sets/IGVFDS9477ARWI/) has no `targeted_genes`. ChIP-seq and CRISPR flow cytometry assays are expected to specify targeted gene(s).",
                "level": 40,
                "level_name": "WARNING",
                "name": "audit_targeted_genes",
                "path": "/measurement-sets/IGVFDS9477ARWI/"
            }
        ]
    },
    "award": {
        "@id": "/awards/HG011972/",
        "component": "functional characterization",
        "contact_pi": {
            "@id": "/users/6c75dbfa-635e-4a7a-8ec8-9e51e9c380a4/",
            "title": "Jesse Engreitz"
        },
        "title": "Stanford Center for Connecting DNA Variants to Function and Phenotype"
    },
    "control_for": [
        {
            "@id": "/measurement-sets/IGVFDS6978TYGN/",
            "accession": "IGVFDS6978TYGN",
            "aliases": [
                "jesse-engreitz:220829_8merInsertion-Jurkat_NoStimulation-Amp_PPIF_promoter-BioRep1-FFrep2-FACS_Input_AmpliconSequencing"
            ],
            "status": "released"
        },
        {
            "@id": "/measurement-sets/IGVFDS0667KDIQ/",
            "accession": "IGVFDS0667KDIQ",
            "aliases": [
                "jesse-engreitz:220829_8merInsertion-Jurkat_NoStimulation-Amp_PPIF_promoter-BioRep1-FFrep2-BinE_AmpliconSequencing"
            ],
            "status": "released"
        },
        {
            "@id": "/measurement-sets/IGVFDS9366UFCD/",
            "accession": "IGVFDS9366UFCD",
            "aliases": [
                "jesse-engreitz:220829_8merInsertion-Jurkat_NoStimulation-Amp_PPIF_promoter-BioRep2-FFrep2-BinD_AmpliconSequencing"
            ],
            "status": "released"
        },
        {
            "@id": "/measurement-sets/IGVFDS4690FWJW/",
            "accession": "IGVFDS4690FWJW",
            "aliases": [
                "jesse-engreitz:220829_8merInsertion-Jurkat_NoStimulation-Amp_PPIF_promoter-BioRep3-FFrep2-BinD_AmpliconSequencing"
            ],
            "status": "released"
        },
        {
            "@id": "/measurement-sets/IGVFDS3973IRIQ/",
            "accession": "IGVFDS3973IRIQ",
            "aliases": [
                "jesse-engreitz:220829_8merInsertion-Jurkat_NoStimulation-Amp_PPIF_promoter-BioRep1-FFrep2-BinF_AmpliconSequencing"
            ],
            "status": "released"
        },
        {
            "@id": "/measurement-sets/IGVFDS2464NZAA/",
            "accession": "IGVFDS2464NZAA",
            "aliases": [
                "jesse-engreitz:220829_8merInsertion-Jurkat_NoStimulation-Amp_PPIF_promoter-BioRep2-FFrep2-BinE_AmpliconSequencing"
            ],
            "status": "released"
        },
        {
            "@id": "/measurement-sets/IGVFDS9843YAKL/",
            "accession": "IGVFDS9843YAKL",
            "aliases": [
                "jesse-engreitz:220829_8merInsertion-Jurkat_Stimulation-Amp_PPIF_promoter-BioRep2-FFrep1-BinB_AmpliconSequencing"
            ],
            "status": "released"
        },
        {
            "@id": "/measurement-sets/IGVFDS8168NPPI/",
            "accession": "IGVFDS8168NPPI",
            "aliases": [
                "jesse-engreitz:220829_8merInsertion-Jurkat_Stimulation-Amp_PPIF_promoter-BioRep2-FFrep2-FACS_Input_AmpliconSequencing"
            ],
            "status": "released"
        },
        {
            "@id": "/measurement-sets/IGVFDS1097QQST/",
            "accession": "IGVFDS1097QQST",
            "aliases": [
                "jesse-engreitz:220829_8merInsertion-Jurkat_Stimulation-Amp_PPIF_promoter-BioRep2-FFrep2-BinF_AmpliconSequencing"
            ],
            "status": "released"
        },
        {
            "@id": "/measurement-sets/IGVFDS1861LEUZ/",
            "accession": "IGVFDS1861LEUZ",
            "aliases": [
                "jesse-engreitz:220829_8merInsertion-Jurkat_Stimulation-Amp_PPIF_promoter-BioRep4-FFrep1-BinC_AmpliconSequencing"
            ],
            "status": "released"
        },
        {
            "@id": "/measurement-sets/IGVFDS9738RCWL/",
            "accession": "IGVFDS9738RCWL",
            "aliases": [
                "jesse-engreitz:220829_8merInsertion-Jurkat_Stimulation-Amp_PPIF_promoter-BioRep3-FFrep2-BinF_AmpliconSequencing"
            ],
            "status": "released"
        },
        {
            "@id": "/measurement-sets/IGVFDS1677ZRBK/",
            "accession": "IGVFDS1677ZRBK",
            "aliases": [
                "jesse-engreitz:220829_8merInsertion-Jurkat_NoStimulation-Amp_PPIF_promoter-BioRep2-FFrep1-BinD_AmpliconSequencing"
            ],
            "status": "released"
        },
        {
            "@id": "/measurement-sets/IGVFDS6157FJTW/",
            "accession": "IGVFDS6157FJTW",
            "aliases": [
                "jesse-engreitz:220829_8merInsertion-Jurkat_NoStimulation-Amp_PPIF_promoter-BioRep2-FFrep2-BinC_AmpliconSequencing"
            ],
            "status": "released"
        },
        {
            "@id": "/measurement-sets/IGVFDS0596BXTA/",
            "accession": "IGVFDS0596BXTA",
            "aliases": [
                "jesse-engreitz:220829_8merInsertion-Jurkat_NoStimulation-Amp_PPIF_promoter-BioRep3-FFrep1-FACS_Input_AmpliconSequencing"
            ],
            "status": "released"
        },
        {
            "@id": "/measurement-sets/IGVFDS3682SXGQ/",
            "accession": "IGVFDS3682SXGQ",
            "aliases": [
                "jesse-engreitz:220829_8merInsertion-Jurkat_NoStimulation-Amp_PPIF_promoter-BioRep3-FFrep2-BinA_AmpliconSequencing"
            ],
            "status": "released"
        },
        {
            "@id": "/measurement-sets/IGVFDS6080NOYA/",
            "accession": "IGVFDS6080NOYA",
            "aliases": [
                "jesse-engreitz:220829_8merInsertion-Jurkat_NoStimulation-Amp_PPIF_promoter-BioRep3-FFrep2-BinC_AmpliconSequencing"
            ],
            "status": "released"
        },
        {
            "@id": "/measurement-sets/IGVFDS3316IDPS/",
            "accession": "IGVFDS3316IDPS",
            "aliases": [
                "jesse-engreitz:220829_8merInsertion-Jurkat_Stimulation-Amp_PPIF_promoter-BioRep1-FFrep1-BinE_AmpliconSequencing"
            ],
            "status": "released"
        },
        {
            "@id": "/measurement-sets/IGVFDS1611RXSM/",
            "accession": "IGVFDS1611RXSM",
            "aliases": [
                "jesse-engreitz:220829_8merInsertion-Jurkat_Stimulation-Amp_PPIF_promoter-BioRep1-FFrep2-BinC_AmpliconSequencing"
            ],
            "status": "released"
        },
        {
            "@id": "/measurement-sets/IGVFDS1971XUME/",
            "accession": "IGVFDS1971XUME",
            "aliases": [
                "jesse-engreitz:220829_8merInsertion-Jurkat_Stimulation-Amp_PPIF_promoter-BioRep3-FFrep1-BinF_AmpliconSequencing"
            ],
            "status": "released"
        },
        {
            "@id": "/measurement-sets/IGVFDS0997EDUX/",
            "accession": "IGVFDS0997EDUX",
            "aliases": [
                "jesse-engreitz:220829_8merInsertion-Jurkat_Stimulation-Amp_PPIF_promoter-BioRep4-FFrep1-FACS_Input_AmpliconSequencing"
            ],
            "status": "released"
        },
        {
            "@id": "/measurement-sets/IGVFDS6022UUBF/",
            "accession": "IGVFDS6022UUBF",
            "aliases": [
                "jesse-engreitz:220829_8merInsertion-Jurkat_Stimulation-Amp_PPIF_promoter-BioRep4-FFrep1-BinB_AmpliconSequencing"
            ],
            "status": "released"
        },
        {
            "@id": "/measurement-sets/IGVFDS4045IKYV/",
            "accession": "IGVFDS4045IKYV",
            "aliases": [
                "jesse-engreitz:220829_8merInsertion-Jurkat_NoStimulation-Amp_PPIF_promoter-BioRep1-FFrep2-BinB_AmpliconSequencing"
            ],
            "status": "released"
        },
        {
            "@id": "/measurement-sets/IGVFDS2324AQUM/",
            "accession": "IGVFDS2324AQUM",
            "aliases": [
                "jesse-engreitz:220829_8merInsertion-Jurkat_NoStimulation-Amp_PPIF_promoter-BioRep2-FFrep1-FACS_Input_AmpliconSequencing"
            ],
            "status": "released"
        },
        {
            "@id": "/measurement-sets/IGVFDS9567MJGD/",
            "accession": "IGVFDS9567MJGD",
            "aliases": [
                "jesse-engreitz:220829_8merInsertion-Jurkat_NoStimulation-Amp_PPIF_promoter-BioRep2-FFrep2-FACS_Input_AmpliconSequencing"
            ],
            "status": "released"
        },
        {
            "@id": "/measurement-sets/IGVFDS6647HVMC/",
            "accession": "IGVFDS6647HVMC",
            "aliases": [
                "jesse-engreitz:220829_8merInsertion-Jurkat_NoStimulation-Amp_PPIF_promoter-BioRep3-FFrep1-BinB_AmpliconSequencing"
            ],
            "status": "released"
        },
        {
            "@id": "/measurement-sets/IGVFDS7769UXHE/",
            "accession": "IGVFDS7769UXHE",
            "aliases": [
                "jesse-engreitz:220829_8merInsertion-Jurkat_NoStimulation-Amp_PPIF_promoter-BioRep3-FFrep2-FACS_Input_AmpliconSequencing"
            ],
            "status": "released"
        },
        {
            "@id": "/measurement-sets/IGVFDS6464FKSV/",
            "accession": "IGVFDS6464FKSV",
            "aliases": [
                "jesse-engreitz:220829_8merInsertion-Jurkat_Stimulation-Amp_PPIF_promoter-BioRep1-FFrep1-BinD_AmpliconSequencing"
            ],
            "status": "released"
        },
        {
            "@id": "/measurement-sets/IGVFDS2784BXPD/",
            "accession": "IGVFDS2784BXPD",
            "aliases": [
                "jesse-engreitz:220829_8merInsertion-Jurkat_Stimulation-Amp_PPIF_promoter-BioRep1-FFrep1-BinF_AmpliconSequencing"
            ],
            "status": "released"
        },
        {
            "@id": "/measurement-sets/IGVFDS0892KCXO/",
            "accession": "IGVFDS0892KCXO",
            "aliases": [
                "jesse-engreitz:220829_8merInsertion-Jurkat_Stimulation-Amp_PPIF_promoter-BioRep1-FFrep2-BinB_AmpliconSequencing"
            ],
            "status": "released"
        },
        {
            "@id": "/measurement-sets/IGVFDS7908WVWQ/",
            "accession": "IGVFDS7908WVWQ",
            "aliases": [
                "jesse-engreitz:220829_8merInsertion-Jurkat_Stimulation-Amp_PPIF_promoter-BioRep2-FFrep1-BinA_AmpliconSequencing"
            ],
            "status": "released"
        },
        {
            "@id": "/measurement-sets/IGVFDS7378VQMR/",
            "accession": "IGVFDS7378VQMR",
            "aliases": [
                "jesse-engreitz:220829_8merInsertion-Jurkat_Stimulation-Amp_PPIF_promoter-BioRep2-FFrep1-BinF_AmpliconSequencing"
            ],
            "status": "released"
        },
        {
            "@id": "/measurement-sets/IGVFDS5488ZDOV/",
            "accession": "IGVFDS5488ZDOV",
            "aliases": [
                "jesse-engreitz:220829_8merInsertion-Jurkat_NoStimulation-Amp_PPIF_promoter-BioRep1-FFrep2-BinA_AmpliconSequencing"
            ],
            "status": "released"
        },
        {
            "@id": "/measurement-sets/IGVFDS5223WASR/",
            "accession": "IGVFDS5223WASR",
            "aliases": [
                "jesse-engreitz:220829_8merInsertion-Jurkat_NoStimulation-Amp_PPIF_promoter-BioRep2-FFrep2-BinB_AmpliconSequencing"
            ],
            "status": "released"
        },
        {
            "@id": "/measurement-sets/IGVFDS2562AMOI/",
            "accession": "IGVFDS2562AMOI",
            "aliases": [
                "jesse-engreitz:220829_8merInsertion-Jurkat_Stimulation-Amp_PPIF_promoter-BioRep1-FFrep1-BinA_AmpliconSequencing"
            ],
            "status": "released"
        },
        {
            "@id": "/measurement-sets/IGVFDS4306VGPH/",
            "accession": "IGVFDS4306VGPH",
            "aliases": [
                "jesse-engreitz:220829_8merInsertion-Jurkat_Stimulation-Amp_PPIF_promoter-BioRep1-FFrep1-FACS_Input_AmpliconSequencing"
            ],
            "status": "released"
        },
        {
            "@id": "/measurement-sets/IGVFDS3030YDAT/",
            "accession": "IGVFDS3030YDAT",
            "aliases": [
                "jesse-engreitz:220829_8merInsertion-Jurkat_Stimulation-Amp_PPIF_promoter-BioRep3-FFrep2-BinD_AmpliconSequencing"
            ],
            "status": "released"
        },
        {
            "@id": "/measurement-sets/IGVFDS1466VGTF/",
            "accession": "IGVFDS1466VGTF",
            "aliases": [
                "jesse-engreitz:220829_8merInsertion-Jurkat_Stimulation-Amp_PPIF_promoter-BioRep4-FFrep1-BinA_AmpliconSequencing"
            ],
            "status": "released"
        },
        {
            "@id": "/measurement-sets/IGVFDS7638KDSZ/",
            "accession": "IGVFDS7638KDSZ",
            "aliases": [
                "jesse-engreitz:220829_8merInsertion-Jurkat_Stimulation-Amp_PPIF_promoter-BioRep4-FFrep2-BinC_AmpliconSequencing"
            ],
            "status": "released"
        },
        {
            "@id": "/measurement-sets/IGVFDS0120YHME/",
            "accession": "IGVFDS0120YHME",
            "aliases": [
                "jesse-engreitz:220829_8merInsertion-Jurkat_NoStimulation-Amp_PPIF_promoter-BioRep2-FFrep1-BinA_AmpliconSequencing"
            ],
            "status": "released"
        },
        {
            "@id": "/measurement-sets/IGVFDS5064DHZL/",
            "accession": "IGVFDS5064DHZL",
            "aliases": [
                "jesse-engreitz:220829_8merInsertion-Jurkat_NoStimulation-Amp_PPIF_promoter-BioRep2-FFrep1-BinF_AmpliconSequencing"
            ],
            "status": "released"
        },
        {
            "@id": "/measurement-sets/IGVFDS0329UHSG/",
            "accession": "IGVFDS0329UHSG",
            "aliases": [
                "jesse-engreitz:220829_8merInsertion-Jurkat_NoStimulation-Amp_PPIF_promoter-BioRep3-FFrep1-BinA_AmpliconSequencing"
            ],
            "status": "released"
        },
        {
            "@id": "/measurement-sets/IGVFDS5395SYKH/",
            "accession": "IGVFDS5395SYKH",
            "aliases": [
                "jesse-engreitz:220829_8merInsertion-Jurkat_NoStimulation-Amp_PPIF_promoter-BioRep3-FFrep1-BinC_AmpliconSequencing"
            ],
            "status": "released"
        },
        {
            "@id": "/measurement-sets/IGVFDS3176NEHG/",
            "accession": "IGVFDS3176NEHG",
            "aliases": [
                "jesse-engreitz:220829_8merInsertion-Jurkat_NoStimulation-Amp_PPIF_promoter-BioRep3-FFrep2-BinE_AmpliconSequencing"
            ],
            "status": "released"
        },
        {
            "@id": "/measurement-sets/IGVFDS1370QEJF/",
            "accession": "IGVFDS1370QEJF",
            "aliases": [
                "jesse-engreitz:220829_8merInsertion-Jurkat_Stimulation-Amp_PPIF_promoter-BioRep1-FFrep2-FACS_Input_AmpliconSequencing"
            ],
            "status": "released"
        },
        {
            "@id": "/measurement-sets/IGVFDS2425RTOU/",
            "accession": "IGVFDS2425RTOU",
            "aliases": [
                "jesse-engreitz:220829_8merInsertion-Jurkat_Stimulation-Amp_PPIF_promoter-BioRep3-FFrep2-BinA_AmpliconSequencing"
            ],
            "status": "released"
        },
        {
            "@id": "/measurement-sets/IGVFDS0376NQYW/",
            "accession": "IGVFDS0376NQYW",
            "aliases": [
                "jesse-engreitz:220829_8merInsertion-Jurkat_Stimulation-Amp_PPIF_promoter-BioRep4-FFrep2-BinD_AmpliconSequencing"
            ],
            "status": "released"
        },
        {
            "@id": "/measurement-sets/IGVFDS7603YHCC/",
            "accession": "IGVFDS7603YHCC",
            "aliases": [
                "jesse-engreitz:220829_8merInsertion-Jurkat_NoStimulation-Amp_PPIF_promoter-BioRep1-FFrep2-BinD_AmpliconSequencing"
            ],
            "status": "released"
        },
        {
            "@id": "/measurement-sets/IGVFDS5248WHUK/",
            "accession": "IGVFDS5248WHUK",
            "aliases": [
                "jesse-engreitz:220829_8merInsertion-Jurkat_NoStimulation-Amp_PPIF_promoter-BioRep3-FFrep2-BinB_AmpliconSequencing"
            ],
            "status": "released"
        },
        {
            "@id": "/measurement-sets/IGVFDS8543APCZ/",
            "accession": "IGVFDS8543APCZ",
            "aliases": [
                "jesse-engreitz:220829_8merInsertion-Jurkat_NoStimulation-Amp_PPIF_promoter-BioRep3-FFrep2-BinF_AmpliconSequencing"
            ],
            "status": "released"
        },
        {
            "@id": "/measurement-sets/IGVFDS9657JQCE/",
            "accession": "IGVFDS9657JQCE",
            "aliases": [
                "jesse-engreitz:220829_8merInsertion-Jurkat_Stimulation-Amp_PPIF_promoter-BioRep4-FFrep2-BinB_AmpliconSequencing"
            ],
            "status": "released"
        },
        {
            "@id": "/measurement-sets/IGVFDS3736NHYM/",
            "accession": "IGVFDS3736NHYM",
            "aliases": [
                "jesse-engreitz:220829_8merInsertion-Jurkat_NoStimulation-Amp_PPIF_promoter-BioRep2-FFrep1-BinE_AmpliconSequencing"
            ],
            "status": "released"
        },
        {
            "@id": "/measurement-sets/IGVFDS0563SROG/",
            "accession": "IGVFDS0563SROG",
            "aliases": [
                "jesse-engreitz:220829_8merInsertion-Jurkat_NoStimulation-Amp_PPIF_promoter-BioRep2-FFrep2-BinA_AmpliconSequencing"
            ],
            "status": "released"
        },
        {
            "@id": "/measurement-sets/IGVFDS9318EBEM/",
            "accession": "IGVFDS9318EBEM",
            "aliases": [
                "jesse-engreitz:220829_8merInsertion-Jurkat_NoStimulation-Amp_PPIF_promoter-BioRep3-FFrep1-BinE_AmpliconSequencing"
            ],
            "status": "released"
        },
        {
            "@id": "/measurement-sets/IGVFDS3533ZJCT/",
            "accession": "IGVFDS3533ZJCT",
            "aliases": [
                "jesse-engreitz:220829_8merInsertion-Jurkat_Stimulation-Amp_PPIF_promoter-BioRep1-FFrep2-BinE_AmpliconSequencing"
            ],
            "status": "released"
        },
        {
            "@id": "/measurement-sets/IGVFDS4005DIAJ/",
            "accession": "IGVFDS4005DIAJ",
            "aliases": [
                "jesse-engreitz:220829_8merInsertion-Jurkat_Stimulation-Amp_PPIF_promoter-BioRep3-FFrep1-BinA_AmpliconSequencing"
            ],
            "status": "released"
        },
        {
            "@id": "/measurement-sets/IGVFDS8831UMQG/",
            "accession": "IGVFDS8831UMQG",
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            ],
            "content_type": "reads",
            "controlled_access": false,
            "creation_timestamp": "2023-12-05T19:05:31.078375+00:00",
            "file_format": "fastq",
            "file_size": 12080436,
            "href": "/sequence-files/IGVFFI6513PEVP/@@download/IGVFFI6513PEVP.fastq.gz",
            "s3_uri": "s3://igvf-files/2023/12/05/faa9e5ec-a19e-4f19-89d4-96f73c0842dd/IGVFFI6513PEVP.fastq.gz",
            "sequencing_platform": {
                "@id": "/platform-terms/EFO_0008566/",
                "status": "released",
                "term_name": "Illumina NextSeq 550"
            },
            "status": "released",
            "submitted_file_name": "220829_pPPIF_JurkatVFF-Jurkat-PE2A-BFP-NA-Amp_pPPIF_S1-BioRep1-FFRep1-BinNeg-PCRrep2_S226_R2_001.fastq.gz",
            "upload_status": "validated"
        },
        {
            "@id": "/sequence-files/IGVFFI9717ZHUD/",
            "accession": "IGVFFI9717ZHUD",
            "aliases": [
                "jesse-engreitz:220829_8merInsertion-Jurkat_NoStimulation-Amp_PPIF_promoter-Jurkat-PE2_Exp1_NegControl-PCRrep2_R1"
            ],
            "content_type": "reads",
            "controlled_access": false,
            "creation_timestamp": "2023-12-05T18:52:20.780015+00:00",
            "file_format": "fastq",
            "file_size": 7455781,
            "href": "/sequence-files/IGVFFI9717ZHUD/@@download/IGVFFI9717ZHUD.fastq.gz",
            "s3_uri": "s3://igvf-files/2023/12/05/a93f2468-8d94-4a48-a062-578f56dc125b/IGVFFI9717ZHUD.fastq.gz",
            "sequencing_platform": {
                "@id": "/platform-terms/EFO_0008566/",
                "status": "released",
                "term_name": "Illumina NextSeq 550"
            },
            "status": "released",
            "submitted_file_name": "220829_pPPIF_JurkatVFF-Jurkat-PE2A-BFP-NA-Amp_pPPIF_S1-BioRep1-FFRep1-BinNeg-PCRrep2_S226_R1_001.fastq.gz",
            "upload_status": "validated"
        }
    ],
    "input_for": [
        "/analysis-sets/IGVFDS9162RHFP/"
    ],
    "lab": {
        "@id": "/labs/jesse-engreitz/",
        "title": "Jesse Engreitz, Stanford"
    },
    "notes": "The readout 2e41e624-f6c7-4f0c-a07e-bc36cefdca39 was removed from this measurement set. This measurement set previously used Variant FlowFISH as a preferred_assay_title, but this enum is now removed. So it has been defaulted to Variant-EFFECTS.",
    "preferred_assay_title": "Variant-EFFECTS",
    "protocols": [
        "https://www.protocols.io/view/flowfish-with-primeflow-36wgq3q4olk5/v1"
    ],
    "release_timestamp": "2023-12-20T23:03:44.257152+00:00",
    "samples": [
        {
            "@id": "/in-vitro-systems/IGVFSM4536EAJV/",
            "@type": [
                "InVitroSystem",
                "Biosample",
                "Sample",
                "Item"
            ],
            "accession": "IGVFSM4536EAJV",
            "aliases": [
                "jesse-engreitz:220829_8merInsertion-Jurkat_NoStimulation-Amp_PPIF_promoter-Jurkat-PE2_Exp1_NegControl"
            ],
            "classifications": [
                "cell line"
            ],
            "modifications": [
                {
                    "@id": "/crispr-modifications/fc6bc0b3-a064-47d0-b95d-a9af14bb1624/",
                    "modality": "prime editing",
                    "status": "released"
                }
            ],
            "sample_terms": [
                {
                    "@id": "/sample-terms/EFO_0002796/",
                    "@type": [
                        "SampleTerm",
                        "OntologyTerm",
                        "Item"
                    ],
                    "aliases": [
                        "igvf:Jurkat"
                    ],
                    "status": "released",
                    "summary": "Jurkat",
                    "term_name": "Jurkat"
                }
            ],
            "status": "released",
            "summary": "Jurkat cell line, male, Homo sapiens modified with CRISPR prime editing Sp-nCas9-M-MLV RT (PE2)",
            "taxa": "Homo sapiens"
        }
    ],
    "schema_version": "23",
    "status": "released",
    "submitted_by": {
        "@id": "/users/f9e7cd82-a407-4a20-89ee-f4dc668b0cbe/",
        "title": "Michael Montgomery"
    },
    "submitted_files_timestamp": "2023-12-05T18:46:02.763276+00:00",
    "summary": "untransfected prime editing Variant-EFFECTS",
    "uuid": "f1b6c0a7-db03-46aa-a6ba-0b365cab6e7f"
}