{
"@context": "/terms/",
"@id": "/measurement-sets/IGVFDS9477ARWI/",
"@type": [
"MeasurementSet",
"FileSet",
"Item"
],
"accession": "IGVFDS9477ARWI",
"aliases": [
"jesse-engreitz:220829_8merInsertion-Jurkat_NoStimulation-Amp_PPIF_promoter-Jurkat-PE2_Exp1_NegControl_AmpliconSequencing",
"jesse-engreitz:220829_8merInsertion-Jurkat_Stimulation-Amp_PPIF_promoter-Jurkat-PE2_Exp1_NegControl_AmpliconSequencing"
],
"assay_term": {
"@id": "/assay-terms/OBI_0003661/",
"term_name": "in vitro CRISPR screen using flow cytometry"
},
"audit": {
"INTERNAL_ACTION": [
{
"category": "mismatched status",
"detail": "Released measurement set [IGVFDS9477ARWI](/measurement-sets/IGVFDS9477ARWI/) has in progress subobject auxiliary set [IGVFDS3868MFLT](/auxiliary-sets/IGVFDS3868MFLT/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/measurement-sets/IGVFDS9477ARWI/"
}
],
"NOT_COMPLIANT": [
{
"category": "missing sequence specification",
"detail": "Auxiliary set [IGVFDS3868MFLT](/auxiliary-sets/IGVFDS3868MFLT/) has sequence file(s): [IGVFFI5433SHDH](/sequence-files/IGVFFI5433SHDH/), [IGVFFI8971BVSI](/sequence-files/IGVFFI8971BVSI/), [IGVFFI6513PEVP](/sequence-files/IGVFFI6513PEVP/), [IGVFFI7540STAN](/sequence-files/IGVFFI7540STAN/), [IGVFFI0832CCKT](/sequence-files/IGVFFI0832CCKT/), [IGVFFI8894RMLM](/sequence-files/IGVFFI8894RMLM/), [IGVFFI9717ZHUD](/sequence-files/IGVFFI9717ZHUD/), [IGVFFI5538RVTT](/sequence-files/IGVFFI5538RVTT/) which do not have any `seqspecs`. Sequence files in a file set are expected to link to a sequence specification file.",
"level": 50,
"level_name": "NOT_COMPLIANT",
"name": "audit_missing_seqspec",
"path": "/auxiliary-sets/IGVFDS3868MFLT/"
},
{
"category": "missing auxiliary set",
"detail": "Measurement set [IGVFDS9477ARWI](/measurement-sets/IGVFDS9477ARWI/) has no cell sorting `auxiliary_sets`. CRISPR-based measurement sets that utilize flow cytometry are expected to link to a cell sorting auxiliary set.",
"level": 50,
"level_name": "NOT_COMPLIANT",
"name": "audit_missing_auxiliary_set",
"path": "/measurement-sets/IGVFDS9477ARWI/"
},
{
"category": "missing targeted genes",
"detail": "Measurement set [IGVFDS9477ARWI](/measurement-sets/IGVFDS9477ARWI/) has no `targeted_genes`. ChIP-seq and CRISPR flow cytometry assays are expected to specify targeted gene(s).",
"level": 50,
"level_name": "NOT_COMPLIANT",
"name": "audit_targeted_genes",
"path": "/measurement-sets/IGVFDS9477ARWI/"
}
],
"WARNING": [
{
"category": "missing sequencing kit",
"detail": "Auxiliary set [IGVFDS3868MFLT](/auxiliary-sets/IGVFDS3868MFLT/) has sequence file(s) [IGVFFI5433SHDH](/sequence-files/IGVFFI5433SHDH/), [IGVFFI8971BVSI](/sequence-files/IGVFFI8971BVSI/), [IGVFFI6513PEVP](/sequence-files/IGVFFI6513PEVP/), [IGVFFI7540STAN](/sequence-files/IGVFFI7540STAN/), [IGVFFI0832CCKT](/sequence-files/IGVFFI0832CCKT/), [IGVFFI8894RMLM](/sequence-files/IGVFFI8894RMLM/), [IGVFFI9717ZHUD](/sequence-files/IGVFFI9717ZHUD/), [IGVFFI5538RVTT](/sequence-files/IGVFFI5538RVTT/) which lack specification of a `sequencing_kit`. Sequence files should specify a sequencing kit.",
"level": 40,
"level_name": "WARNING",
"name": "audit_inconsistent_sequencing_kit",
"path": "/auxiliary-sets/IGVFDS3868MFLT/"
},
{
"category": "missing analysis",
"detail": "Auxiliary set [IGVFDS3868MFLT](/auxiliary-sets/IGVFDS3868MFLT/) is a raw data set with files, but is not listed in any `input_file_sets` for any analysis sets. Raw data sets with files are expected to be associated with at least one analysis set.",
"level": 40,
"level_name": "WARNING",
"name": "audit_input_file_set_for",
"path": "/auxiliary-sets/IGVFDS3868MFLT/"
}
]
},
"auxiliary_sets": [
{
"@id": "/auxiliary-sets/IGVFDS3868MFLT/",
"accession": "IGVFDS3868MFLT",
"aliases": [
"jesse-engreitz:220829_8merInsertion-Jurkat_NoStimulation-Amp_PPIF_promoter-Jurkat-PE2_Exp1_NegControl_AmpliconSequencing_AuxiliarySet"
],
"file_set_type": "variant sequencing"
}
],
"award": {
"@id": "/awards/HG011972/",
"component": "functional characterization",
"contact_pi": {
"@id": "/users/6c75dbfa-635e-4a7a-8ec8-9e51e9c380a4/",
"title": "Jesse Engreitz"
},
"title": "Stanford Center for Connecting DNA Variants to Function and Phenotype"
},
"control_for": [
{
"@id": "/measurement-sets/IGVFDS6978TYGN/",
"accession": "IGVFDS6978TYGN",
"aliases": [
"jesse-engreitz:220829_8merInsertion-Jurkat_NoStimulation-Amp_PPIF_promoter-BioRep1-FFrep2-FACS_Input_AmpliconSequencing"
]
},
{
"@id": "/measurement-sets/IGVFDS0667KDIQ/",
"accession": "IGVFDS0667KDIQ",
"aliases": [
"jesse-engreitz:220829_8merInsertion-Jurkat_NoStimulation-Amp_PPIF_promoter-BioRep1-FFrep2-BinE_AmpliconSequencing"
]
},
{
"@id": "/measurement-sets/IGVFDS9366UFCD/",
"accession": "IGVFDS9366UFCD",
"aliases": [
"jesse-engreitz:220829_8merInsertion-Jurkat_NoStimulation-Amp_PPIF_promoter-BioRep2-FFrep2-BinD_AmpliconSequencing"
]
},
{
"@id": "/measurement-sets/IGVFDS4690FWJW/",
"accession": "IGVFDS4690FWJW",
"aliases": [
"jesse-engreitz:220829_8merInsertion-Jurkat_NoStimulation-Amp_PPIF_promoter-BioRep3-FFrep2-BinD_AmpliconSequencing"
]
},
{
"@id": "/measurement-sets/IGVFDS3973IRIQ/",
"accession": "IGVFDS3973IRIQ",
"aliases": [
"jesse-engreitz:220829_8merInsertion-Jurkat_NoStimulation-Amp_PPIF_promoter-BioRep1-FFrep2-BinF_AmpliconSequencing"
]
},
{
"@id": "/measurement-sets/IGVFDS2464NZAA/",
"accession": "IGVFDS2464NZAA",
"aliases": [
"jesse-engreitz:220829_8merInsertion-Jurkat_NoStimulation-Amp_PPIF_promoter-BioRep2-FFrep2-BinE_AmpliconSequencing"
]
},
{
"@id": "/measurement-sets/IGVFDS9843YAKL/",
"accession": "IGVFDS9843YAKL",
"aliases": [
"jesse-engreitz:220829_8merInsertion-Jurkat_Stimulation-Amp_PPIF_promoter-BioRep2-FFrep1-BinB_AmpliconSequencing"
]
},
{
"@id": "/measurement-sets/IGVFDS8168NPPI/",
"accession": "IGVFDS8168NPPI",
"aliases": [
"jesse-engreitz:220829_8merInsertion-Jurkat_Stimulation-Amp_PPIF_promoter-BioRep2-FFrep2-FACS_Input_AmpliconSequencing"
]
},
{
"@id": "/measurement-sets/IGVFDS1097QQST/",
"accession": "IGVFDS1097QQST",
"aliases": [
"jesse-engreitz:220829_8merInsertion-Jurkat_Stimulation-Amp_PPIF_promoter-BioRep2-FFrep2-BinF_AmpliconSequencing"
]
},
{
"@id": "/measurement-sets/IGVFDS1861LEUZ/",
"accession": "IGVFDS1861LEUZ",
"aliases": [
"jesse-engreitz:220829_8merInsertion-Jurkat_Stimulation-Amp_PPIF_promoter-BioRep4-FFrep1-BinC_AmpliconSequencing"
]
},
{
"@id": "/measurement-sets/IGVFDS9738RCWL/",
"accession": "IGVFDS9738RCWL",
"aliases": [
"jesse-engreitz:220829_8merInsertion-Jurkat_Stimulation-Amp_PPIF_promoter-BioRep3-FFrep2-BinF_AmpliconSequencing"
]
},
{
"@id": "/measurement-sets/IGVFDS1677ZRBK/",
"accession": "IGVFDS1677ZRBK",
"aliases": [
"jesse-engreitz:220829_8merInsertion-Jurkat_NoStimulation-Amp_PPIF_promoter-BioRep2-FFrep1-BinD_AmpliconSequencing"
]
},
{
"@id": "/measurement-sets/IGVFDS6157FJTW/",
"accession": "IGVFDS6157FJTW",
"aliases": [
"jesse-engreitz:220829_8merInsertion-Jurkat_NoStimulation-Amp_PPIF_promoter-BioRep2-FFrep2-BinC_AmpliconSequencing"
]
},
{
"@id": "/measurement-sets/IGVFDS0596BXTA/",
"accession": "IGVFDS0596BXTA",
"aliases": [
"jesse-engreitz:220829_8merInsertion-Jurkat_NoStimulation-Amp_PPIF_promoter-BioRep3-FFrep1-FACS_Input_AmpliconSequencing"
]
},
{
"@id": "/measurement-sets/IGVFDS3682SXGQ/",
"accession": "IGVFDS3682SXGQ",
"aliases": [
"jesse-engreitz:220829_8merInsertion-Jurkat_NoStimulation-Amp_PPIF_promoter-BioRep3-FFrep2-BinA_AmpliconSequencing"
]
},
{
"@id": "/measurement-sets/IGVFDS6080NOYA/",
"accession": "IGVFDS6080NOYA",
"aliases": [
"jesse-engreitz:220829_8merInsertion-Jurkat_NoStimulation-Amp_PPIF_promoter-BioRep3-FFrep2-BinC_AmpliconSequencing"
]
},
{
"@id": "/measurement-sets/IGVFDS3316IDPS/",
"accession": "IGVFDS3316IDPS",
"aliases": [
"jesse-engreitz:220829_8merInsertion-Jurkat_Stimulation-Amp_PPIF_promoter-BioRep1-FFrep1-BinE_AmpliconSequencing"
]
},
{
"@id": "/measurement-sets/IGVFDS1611RXSM/",
"accession": "IGVFDS1611RXSM",
"aliases": [
"jesse-engreitz:220829_8merInsertion-Jurkat_Stimulation-Amp_PPIF_promoter-BioRep1-FFrep2-BinC_AmpliconSequencing"
]
},
{
"@id": "/measurement-sets/IGVFDS1971XUME/",
"accession": "IGVFDS1971XUME",
"aliases": [
"jesse-engreitz:220829_8merInsertion-Jurkat_Stimulation-Amp_PPIF_promoter-BioRep3-FFrep1-BinF_AmpliconSequencing"
]
},
{
"@id": "/measurement-sets/IGVFDS0997EDUX/",
"accession": "IGVFDS0997EDUX",
"aliases": [
"jesse-engreitz:220829_8merInsertion-Jurkat_Stimulation-Amp_PPIF_promoter-BioRep4-FFrep1-FACS_Input_AmpliconSequencing"
]
},
{
"@id": "/measurement-sets/IGVFDS6022UUBF/",
"accession": "IGVFDS6022UUBF",
"aliases": [
"jesse-engreitz:220829_8merInsertion-Jurkat_Stimulation-Amp_PPIF_promoter-BioRep4-FFrep1-BinB_AmpliconSequencing"
]
},
{
"@id": "/measurement-sets/IGVFDS4045IKYV/",
"accession": "IGVFDS4045IKYV",
"aliases": [
"jesse-engreitz:220829_8merInsertion-Jurkat_NoStimulation-Amp_PPIF_promoter-BioRep1-FFrep2-BinB_AmpliconSequencing"
]
},
{
"@id": "/measurement-sets/IGVFDS2324AQUM/",
"accession": "IGVFDS2324AQUM",
"aliases": [
"jesse-engreitz:220829_8merInsertion-Jurkat_NoStimulation-Amp_PPIF_promoter-BioRep2-FFrep1-FACS_Input_AmpliconSequencing"
]
},
{
"@id": "/measurement-sets/IGVFDS9567MJGD/",
"accession": "IGVFDS9567MJGD",
"aliases": [
"jesse-engreitz:220829_8merInsertion-Jurkat_NoStimulation-Amp_PPIF_promoter-BioRep2-FFrep2-FACS_Input_AmpliconSequencing"
]
},
{
"@id": "/measurement-sets/IGVFDS6647HVMC/",
"accession": "IGVFDS6647HVMC",
"aliases": [
"jesse-engreitz:220829_8merInsertion-Jurkat_NoStimulation-Amp_PPIF_promoter-BioRep3-FFrep1-BinB_AmpliconSequencing"
]
},
{
"@id": "/measurement-sets/IGVFDS7769UXHE/",
"accession": "IGVFDS7769UXHE",
"aliases": [
"jesse-engreitz:220829_8merInsertion-Jurkat_NoStimulation-Amp_PPIF_promoter-BioRep3-FFrep2-FACS_Input_AmpliconSequencing"
]
},
{
"@id": "/measurement-sets/IGVFDS6464FKSV/",
"accession": "IGVFDS6464FKSV",
"aliases": [
"jesse-engreitz:220829_8merInsertion-Jurkat_Stimulation-Amp_PPIF_promoter-BioRep1-FFrep1-BinD_AmpliconSequencing"
]
},
{
"@id": "/measurement-sets/IGVFDS2784BXPD/",
"accession": "IGVFDS2784BXPD",
"aliases": [
"jesse-engreitz:220829_8merInsertion-Jurkat_Stimulation-Amp_PPIF_promoter-BioRep1-FFrep1-BinF_AmpliconSequencing"
]
},
{
"@id": "/measurement-sets/IGVFDS0892KCXO/",
"accession": "IGVFDS0892KCXO",
"aliases": [
"jesse-engreitz:220829_8merInsertion-Jurkat_Stimulation-Amp_PPIF_promoter-BioRep1-FFrep2-BinB_AmpliconSequencing"
]
},
{
"@id": "/measurement-sets/IGVFDS7908WVWQ/",
"accession": "IGVFDS7908WVWQ",
"aliases": [
"jesse-engreitz:220829_8merInsertion-Jurkat_Stimulation-Amp_PPIF_promoter-BioRep2-FFrep1-BinA_AmpliconSequencing"
]
},
{
"@id": "/measurement-sets/IGVFDS7378VQMR/",
"accession": "IGVFDS7378VQMR",
"aliases": [
"jesse-engreitz:220829_8merInsertion-Jurkat_Stimulation-Amp_PPIF_promoter-BioRep2-FFrep1-BinF_AmpliconSequencing"
]
},
{
"@id": "/measurement-sets/IGVFDS5488ZDOV/",
"accession": "IGVFDS5488ZDOV",
"aliases": [
"jesse-engreitz:220829_8merInsertion-Jurkat_NoStimulation-Amp_PPIF_promoter-BioRep1-FFrep2-BinA_AmpliconSequencing"
]
},
{
"@id": "/measurement-sets/IGVFDS5223WASR/",
"accession": "IGVFDS5223WASR",
"aliases": [
"jesse-engreitz:220829_8merInsertion-Jurkat_NoStimulation-Amp_PPIF_promoter-BioRep2-FFrep2-BinB_AmpliconSequencing"
]
},
{
"@id": "/measurement-sets/IGVFDS2562AMOI/",
"accession": "IGVFDS2562AMOI",
"aliases": [
"jesse-engreitz:220829_8merInsertion-Jurkat_Stimulation-Amp_PPIF_promoter-BioRep1-FFrep1-BinA_AmpliconSequencing"
]
},
{
"@id": "/measurement-sets/IGVFDS4306VGPH/",
"accession": "IGVFDS4306VGPH",
"aliases": [
"jesse-engreitz:220829_8merInsertion-Jurkat_Stimulation-Amp_PPIF_promoter-BioRep1-FFrep1-FACS_Input_AmpliconSequencing"
]
},
{
"@id": "/measurement-sets/IGVFDS3030YDAT/",
"accession": "IGVFDS3030YDAT",
"aliases": [
"jesse-engreitz:220829_8merInsertion-Jurkat_Stimulation-Amp_PPIF_promoter-BioRep3-FFrep2-BinD_AmpliconSequencing"
]
},
{
"@id": "/measurement-sets/IGVFDS1466VGTF/",
"accession": "IGVFDS1466VGTF",
"aliases": [
"jesse-engreitz:220829_8merInsertion-Jurkat_Stimulation-Amp_PPIF_promoter-BioRep4-FFrep1-BinA_AmpliconSequencing"
]
},
{
"@id": "/measurement-sets/IGVFDS7638KDSZ/",
"accession": "IGVFDS7638KDSZ",
"aliases": [
"jesse-engreitz:220829_8merInsertion-Jurkat_Stimulation-Amp_PPIF_promoter-BioRep4-FFrep2-BinC_AmpliconSequencing"
]
},
{
"@id": "/measurement-sets/IGVFDS0120YHME/",
"accession": "IGVFDS0120YHME",
"aliases": [
"jesse-engreitz:220829_8merInsertion-Jurkat_NoStimulation-Amp_PPIF_promoter-BioRep2-FFrep1-BinA_AmpliconSequencing"
]
},
{
"@id": "/measurement-sets/IGVFDS5064DHZL/",
"accession": "IGVFDS5064DHZL",
"aliases": [
"jesse-engreitz:220829_8merInsertion-Jurkat_NoStimulation-Amp_PPIF_promoter-BioRep2-FFrep1-BinF_AmpliconSequencing"
]
},
{
"@id": "/measurement-sets/IGVFDS0329UHSG/",
"accession": "IGVFDS0329UHSG",
"aliases": [
"jesse-engreitz:220829_8merInsertion-Jurkat_NoStimulation-Amp_PPIF_promoter-BioRep3-FFrep1-BinA_AmpliconSequencing"
]
},
{
"@id": "/measurement-sets/IGVFDS5395SYKH/",
"accession": "IGVFDS5395SYKH",
"aliases": [
"jesse-engreitz:220829_8merInsertion-Jurkat_NoStimulation-Amp_PPIF_promoter-BioRep3-FFrep1-BinC_AmpliconSequencing"
]
},
{
"@id": "/measurement-sets/IGVFDS3176NEHG/",
"accession": "IGVFDS3176NEHG",
"aliases": [
"jesse-engreitz:220829_8merInsertion-Jurkat_NoStimulation-Amp_PPIF_promoter-BioRep3-FFrep2-BinE_AmpliconSequencing"
]
},
{
"@id": "/measurement-sets/IGVFDS1370QEJF/",
"accession": "IGVFDS1370QEJF",
"aliases": [
"jesse-engreitz:220829_8merInsertion-Jurkat_Stimulation-Amp_PPIF_promoter-BioRep1-FFrep2-FACS_Input_AmpliconSequencing"
]
},
{
"@id": "/measurement-sets/IGVFDS2425RTOU/",
"accession": "IGVFDS2425RTOU",
"aliases": [
"jesse-engreitz:220829_8merInsertion-Jurkat_Stimulation-Amp_PPIF_promoter-BioRep3-FFrep2-BinA_AmpliconSequencing"
]
},
{
"@id": "/measurement-sets/IGVFDS0376NQYW/",
"accession": "IGVFDS0376NQYW",
"aliases": [
"jesse-engreitz:220829_8merInsertion-Jurkat_Stimulation-Amp_PPIF_promoter-BioRep4-FFrep2-BinD_AmpliconSequencing"
]
},
{
"@id": "/measurement-sets/IGVFDS7603YHCC/",
"accession": "IGVFDS7603YHCC",
"aliases": [
"jesse-engreitz:220829_8merInsertion-Jurkat_NoStimulation-Amp_PPIF_promoter-BioRep1-FFrep2-BinD_AmpliconSequencing"
]
},
{
"@id": "/measurement-sets/IGVFDS5248WHUK/",
"accession": "IGVFDS5248WHUK",
"aliases": [
"jesse-engreitz:220829_8merInsertion-Jurkat_NoStimulation-Amp_PPIF_promoter-BioRep3-FFrep2-BinB_AmpliconSequencing"
]
},
{
"@id": "/measurement-sets/IGVFDS8543APCZ/",
"accession": "IGVFDS8543APCZ",
"aliases": [
"jesse-engreitz:220829_8merInsertion-Jurkat_NoStimulation-Amp_PPIF_promoter-BioRep3-FFrep2-BinF_AmpliconSequencing"
]
},
{
"@id": "/measurement-sets/IGVFDS9657JQCE/",
"accession": "IGVFDS9657JQCE",
"aliases": [
"jesse-engreitz:220829_8merInsertion-Jurkat_Stimulation-Amp_PPIF_promoter-BioRep4-FFrep2-BinB_AmpliconSequencing"
]
},
{
"@id": "/measurement-sets/IGVFDS3736NHYM/",
"accession": "IGVFDS3736NHYM",
"aliases": [
"jesse-engreitz:220829_8merInsertion-Jurkat_NoStimulation-Amp_PPIF_promoter-BioRep2-FFrep1-BinE_AmpliconSequencing"
]
},
{
"@id": "/measurement-sets/IGVFDS0563SROG/",
"accession": "IGVFDS0563SROG",
"aliases": [
"jesse-engreitz:220829_8merInsertion-Jurkat_NoStimulation-Amp_PPIF_promoter-BioRep2-FFrep2-BinA_AmpliconSequencing"
]
},
{
"@id": "/measurement-sets/IGVFDS9318EBEM/",
"accession": "IGVFDS9318EBEM",
"aliases": [
"jesse-engreitz:220829_8merInsertion-Jurkat_NoStimulation-Amp_PPIF_promoter-BioRep3-FFrep1-BinE_AmpliconSequencing"
]
},
{
"@id": "/measurement-sets/IGVFDS3533ZJCT/",
"accession": "IGVFDS3533ZJCT",
"aliases": [
"jesse-engreitz:220829_8merInsertion-Jurkat_Stimulation-Amp_PPIF_promoter-BioRep1-FFrep2-BinE_AmpliconSequencing"
]
},
{
"@id": "/measurement-sets/IGVFDS4005DIAJ/",
"accession": "IGVFDS4005DIAJ",
"aliases": [
"jesse-engreitz:220829_8merInsertion-Jurkat_Stimulation-Amp_PPIF_promoter-BioRep3-FFrep1-BinA_AmpliconSequencing"
]
},
{
"@id": "/measurement-sets/IGVFDS8831UMQG/",
"accession": "IGVFDS8831UMQG",
"aliases": [
"jesse-engreitz:220829_8merInsertion-Jurkat_Stimulation-Amp_PPIF_promoter-BioRep3-FFrep1-BinE_AmpliconSequencing"
]
},
{
"@id": "/measurement-sets/IGVFDS8094KCRL/",
"accession": "IGVFDS8094KCRL",
"aliases": [
"jesse-engreitz:220829_8merInsertion-Jurkat_NoStimulation-Amp_PPIF_promoter-BioRep2-FFrep1-BinB_AmpliconSequencing"
]
},
{
"@id": "/measurement-sets/IGVFDS8639XKMS/",
"accession": "IGVFDS8639XKMS",
"aliases": [
"jesse-engreitz:220829_8merInsertion-Jurkat_NoStimulation-Amp_PPIF_promoter-BioRep2-FFrep2-BinF_AmpliconSequencing"
]
},
{
"@id": "/measurement-sets/IGVFDS1682DWUE/",
"accession": "IGVFDS1682DWUE",
"aliases": [
"jesse-engreitz:220829_8merInsertion-Jurkat_NoStimulation-Amp_PPIF_promoter-BioRep3-FFrep1-BinF_AmpliconSequencing"
]
},
{
"@id": "/measurement-sets/IGVFDS3789TNPM/",
"accession": "IGVFDS3789TNPM",
"aliases": [
"jesse-engreitz:220829_8merInsertion-Jurkat_Stimulation-Amp_PPIF_promoter-BioRep1-FFrep1-BinC_AmpliconSequencing"
]
},
{
"@id": "/measurement-sets/IGVFDS7074EFTA/",
"accession": "IGVFDS7074EFTA",
"aliases": [
"jesse-engreitz:220829_8merInsertion-Jurkat_Stimulation-Amp_PPIF_promoter-BioRep2-FFrep1-BinC_AmpliconSequencing"
]
},
{
"@id": "/measurement-sets/IGVFDS5758OSKA/",
"accession": "IGVFDS5758OSKA",
"aliases": [
"jesse-engreitz:220829_8merInsertion-Jurkat_Stimulation-Amp_PPIF_promoter-BioRep2-FFrep2-BinA_AmpliconSequencing"
]
},
{
"@id": "/measurement-sets/IGVFDS1148VATA/",
"accession": "IGVFDS1148VATA",
"aliases": [
"jesse-engreitz:220829_8merInsertion-Jurkat_NoStimulation-Amp_PPIF_promoter-BioRep2-FFrep1-BinC_AmpliconSequencing"
]
},
{
"@id": "/measurement-sets/IGVFDS1765SKCX/",
"accession": "IGVFDS1765SKCX",
"aliases": [
"jesse-engreitz:220829_8merInsertion-Jurkat_NoStimulation-Amp_PPIF_promoter-BioRep3-FFrep1-BinD_AmpliconSequencing"
]
},
{
"@id": "/measurement-sets/IGVFDS2928NFHD/",
"accession": "IGVFDS2928NFHD",
"aliases": [
"jesse-engreitz:220829_8merInsertion-Jurkat_Stimulation-Amp_PPIF_promoter-BioRep2-FFrep1-FACS_Input_AmpliconSequencing"
]
},
{
"@id": "/measurement-sets/IGVFDS9063BNOD/",
"accession": "IGVFDS9063BNOD",
"aliases": [
"jesse-engreitz:220829_8merInsertion-Jurkat_Stimulation-Amp_PPIF_promoter-BioRep3-FFrep2-FACS_Input_AmpliconSequencing"
]
},
{
"@id": "/measurement-sets/IGVFDS5918LGHY/",
"accession": "IGVFDS5918LGHY",
"aliases": [
"jesse-engreitz:220829_8merInsertion-Jurkat_Stimulation-Amp_PPIF_promoter-BioRep4-FFrep2-BinF_AmpliconSequencing"
]
},
{
"@id": "/measurement-sets/IGVFDS1428WSZE/",
"accession": "IGVFDS1428WSZE",
"aliases": [
"jesse-engreitz:220829_8merInsertion-Jurkat_Stimulation-Amp_PPIF_promoter-BioRep1-FFrep1-BinB_AmpliconSequencing"
]
},
{
"@id": "/measurement-sets/IGVFDS8222WPQR/",
"accession": "IGVFDS8222WPQR",
"aliases": [
"jesse-engreitz:220829_8merInsertion-Jurkat_Stimulation-Amp_PPIF_promoter-BioRep1-FFrep2-BinD_AmpliconSequencing"
]
},
{
"@id": "/measurement-sets/IGVFDS2192NCTH/",
"accession": "IGVFDS2192NCTH",
"aliases": [
"jesse-engreitz:220829_8merInsertion-Jurkat_Stimulation-Amp_PPIF_promoter-BioRep2-FFrep1-BinD_AmpliconSequencing"
]
},
{
"@id": "/measurement-sets/IGVFDS7239RLJY/",
"accession": "IGVFDS7239RLJY",
"aliases": [
"jesse-engreitz:220829_8merInsertion-Jurkat_Stimulation-Amp_PPIF_promoter-BioRep2-FFrep1-BinE_AmpliconSequencing"
]
},
{
"@id": "/measurement-sets/IGVFDS4898EFFL/",
"accession": "IGVFDS4898EFFL",
"aliases": [
"jesse-engreitz:220829_8merInsertion-Jurkat_Stimulation-Amp_PPIF_promoter-BioRep3-FFrep1-FACS_Input_AmpliconSequencing"
]
},
{
"@id": "/measurement-sets/IGVFDS6884MESW/",
"accession": "IGVFDS6884MESW",
"aliases": [
"jesse-engreitz:220829_8merInsertion-Jurkat_Stimulation-Amp_PPIF_promoter-BioRep3-FFrep1-BinC_AmpliconSequencing"
]
},
{
"@id": "/measurement-sets/IGVFDS4240XVMR/",
"accession": "IGVFDS4240XVMR",
"aliases": [
"jesse-engreitz:220829_8merInsertion-Jurkat_Stimulation-Amp_PPIF_promoter-BioRep4-FFrep1-BinF_AmpliconSequencing"
]
},
{
"@id": "/measurement-sets/IGVFDS3735FYOA/",
"accession": "IGVFDS3735FYOA",
"aliases": [
"jesse-engreitz:220829_8merInsertion-Jurkat_Stimulation-Amp_PPIF_promoter-BioRep4-FFrep2-FACS_Input_AmpliconSequencing"
]
},
{
"@id": "/measurement-sets/IGVFDS3034JURQ/",
"accession": "IGVFDS3034JURQ",
"aliases": [
"jesse-engreitz:220829_8merInsertion-Jurkat_NoStimulation-Amp_PPIF_promoter-BioRep1-FFrep2-BinC_AmpliconSequencing"
]
},
{
"@id": "/measurement-sets/IGVFDS6085VVNC/",
"accession": "IGVFDS6085VVNC",
"aliases": [
"jesse-engreitz:220829_8merInsertion-Jurkat_Stimulation-Amp_PPIF_promoter-BioRep1-FFrep2-BinA_AmpliconSequencing"
]
},
{
"@id": "/measurement-sets/IGVFDS3004BQJG/",
"accession": "IGVFDS3004BQJG",
"aliases": [
"jesse-engreitz:220829_8merInsertion-Jurkat_Stimulation-Amp_PPIF_promoter-BioRep1-FFrep2-BinF_AmpliconSequencing"
]
},
{
"@id": "/measurement-sets/IGVFDS6332JYBE/",
"accession": "IGVFDS6332JYBE",
"aliases": [
"jesse-engreitz:220829_8merInsertion-Jurkat_Stimulation-Amp_PPIF_promoter-BioRep2-FFrep2-BinB_AmpliconSequencing"
]
},
{
"@id": "/measurement-sets/IGVFDS1069GOGI/",
"accession": "IGVFDS1069GOGI",
"aliases": [
"jesse-engreitz:220829_8merInsertion-Jurkat_Stimulation-Amp_PPIF_promoter-BioRep3-FFrep2-BinC_AmpliconSequencing"
]
},
{
"@id": "/measurement-sets/IGVFDS0506RSOE/",
"accession": "IGVFDS0506RSOE",
"aliases": [
"jesse-engreitz:220829_8merInsertion-Jurkat_Stimulation-Amp_PPIF_promoter-BioRep4-FFrep1-BinD_AmpliconSequencing"
]
},
{
"@id": "/measurement-sets/IGVFDS6279CHIX/",
"accession": "IGVFDS6279CHIX",
"aliases": [
"jesse-engreitz:220829_8merInsertion-Jurkat_Stimulation-Amp_PPIF_promoter-BioRep4-FFrep1-BinE_AmpliconSequencing"
]
},
{
"@id": "/measurement-sets/IGVFDS5538QQGU/",
"accession": "IGVFDS5538QQGU",
"aliases": [
"jesse-engreitz:220829_8merInsertion-Jurkat_NoStimulation-Amp_PPIF_promoter-BioRep1-FFrep1-BinC_AmpliconSequencing"
]
},
{
"@id": "/measurement-sets/IGVFDS1872APYF/",
"accession": "IGVFDS1872APYF",
"aliases": [
"jesse-engreitz:220829_8merInsertion-Jurkat_Stimulation-Amp_PPIF_promoter-BioRep2-FFrep2-BinC_AmpliconSequencing"
]
},
{
"@id": "/measurement-sets/IGVFDS8568QABB/",
"accession": "IGVFDS8568QABB",
"aliases": [
"jesse-engreitz:220829_8merInsertion-Jurkat_Stimulation-Amp_PPIF_promoter-BioRep2-FFrep2-BinD_AmpliconSequencing"
]
},
{
"@id": "/measurement-sets/IGVFDS9207WJXA/",
"accession": "IGVFDS9207WJXA",
"aliases": [
"jesse-engreitz:220829_8merInsertion-Jurkat_Stimulation-Amp_PPIF_promoter-BioRep3-FFrep1-BinB_AmpliconSequencing"
]
},
{
"@id": "/measurement-sets/IGVFDS2950WXZR/",
"accession": "IGVFDS2950WXZR",
"aliases": [
"jesse-engreitz:220829_8merInsertion-Jurkat_Stimulation-Amp_PPIF_promoter-BioRep3-FFrep1-BinD_AmpliconSequencing"
]
},
{
"@id": "/measurement-sets/IGVFDS3553DWNL/",
"accession": "IGVFDS3553DWNL",
"aliases": [
"jesse-engreitz:220829_8merInsertion-Jurkat_Stimulation-Amp_PPIF_promoter-BioRep3-FFrep2-BinE_AmpliconSequencing"
]
},
{
"@id": "/measurement-sets/IGVFDS5918RSZR/",
"accession": "IGVFDS5918RSZR",
"aliases": [
"jesse-engreitz:220829_8merInsertion-Jurkat_Stimulation-Amp_PPIF_promoter-BioRep2-FFrep2-BinE_AmpliconSequencing"
]
},
{
"@id": "/measurement-sets/IGVFDS1892NDDQ/",
"accession": "IGVFDS1892NDDQ",
"aliases": [
"jesse-engreitz:220829_8merInsertion-Jurkat_Stimulation-Amp_PPIF_promoter-BioRep3-FFrep2-BinB_AmpliconSequencing"
]
},
{
"@id": "/measurement-sets/IGVFDS1892KLOO/",
"accession": "IGVFDS1892KLOO",
"aliases": [
"jesse-engreitz:220829_8merInsertion-Jurkat_Stimulation-Amp_PPIF_promoter-BioRep4-FFrep2-BinA_AmpliconSequencing"
]
},
{
"@id": "/measurement-sets/IGVFDS4515XTAP/",
"accession": "IGVFDS4515XTAP",
"aliases": [
"jesse-engreitz:220829_8merInsertion-Jurkat_Stimulation-Amp_PPIF_promoter-BioRep4-FFrep2-BinE_AmpliconSequencing"
]
},
{
"@id": "/measurement-sets/IGVFDS4551ZTES/",
"accession": "IGVFDS4551ZTES",
"aliases": [
"jesse-engreitz:220829_8merInsertion-Jurkat_NoStimulation-Amp_PPIF_promoter-BioRep1-FFrep1-BinA_AmpliconSequencing"
]
},
{
"@id": "/measurement-sets/IGVFDS5585MKNA/",
"accession": "IGVFDS5585MKNA",
"aliases": [
"jesse-engreitz:220829_8merInsertion-Jurkat_NoStimulation-Amp_PPIF_promoter-BioRep1-FFrep1-BinB_AmpliconSequencing"
]
},
{
"@id": "/measurement-sets/IGVFDS7615TALZ/",
"accession": "IGVFDS7615TALZ",
"aliases": [
"jesse-engreitz:220829_8merInsertion-Jurkat_NoStimulation-Amp_PPIF_promoter-BioRep1-FFrep1-BinE_AmpliconSequencing"
]
},
{
"@id": "/measurement-sets/IGVFDS2964LIUB/",
"accession": "IGVFDS2964LIUB",
"aliases": [
"jesse-engreitz:220829_8merInsertion-Jurkat_NoStimulation-Amp_PPIF_promoter-BioRep1-FFrep1-FACS_Input_AmpliconSequencing"
]
},
{
"@id": "/measurement-sets/IGVFDS9915DQXW/",
"accession": "IGVFDS9915DQXW",
"aliases": [
"jesse-engreitz:220829_8merInsertion-Jurkat_NoStimulation-Amp_PPIF_promoter-BioRep1-FFrep1-BinD_AmpliconSequencing"
]
},
{
"@id": "/measurement-sets/IGVFDS1826IERV/",
"accession": "IGVFDS1826IERV",
"aliases": [
"jesse-engreitz:220829_8merInsertion-Jurkat_NoStimulation-Amp_PPIF_promoter-BioRep1-FFrep1-BinF_AmpliconSequencing"
]
}
],
"creation_timestamp": "2023-11-30T22:47:07.235065+00:00",
"donors": [
{
"@id": "/human-donors/IGVFDO1080XFGV/",
"accession": "IGVFDO1080XFGV",
"aliases": [
"igvf:donor_of_Jurkat"
],
"sex": "male",
"status": "released",
"taxa": "Homo sapiens"
}
],
"file_set_type": "experimental data",
"files": [],
"input_file_set_for": [
"/analysis-sets/IGVFDS9162RHFP/"
],
"lab": {
"@id": "/labs/jesse-engreitz/",
"title": "Jesse Engreitz, Stanford"
},
"notes": "The readout 2e41e624-f6c7-4f0c-a07e-bc36cefdca39 was removed from this measurement set.",
"preferred_assay_title": "Variant FlowFISH",
"protocols": [
"https://www.protocols.io/view/flowfish-with-primeflow-36wgq3q4olk5/v1"
],
"release_timestamp": "2023-12-20T23:03:44.257152+00:00",
"samples": [
{
"@id": "/in-vitro-systems/IGVFSM4536EAJV/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM4536EAJV",
"aliases": [
"jesse-engreitz:220829_8merInsertion-Jurkat_NoStimulation-Amp_PPIF_promoter-Jurkat-PE2_Exp1_NegControl"
],
"classifications": [
"cell line"
],
"modifications": [
{
"@id": "/crispr-modifications/fc6bc0b3-a064-47d0-b95d-a9af14bb1624/",
"modality": "prime editing"
}
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0002796/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"aliases": [
"igvf:Jurkat"
],
"status": "released",
"summary": "Jurkat",
"term_name": "Jurkat"
}
],
"status": "released",
"summary": "Jurkat cell line, male, Homo sapiens",
"taxa": "Homo sapiens"
}
],
"schema_version": "20",
"status": "released",
"submitted_by": {
"@id": "/users/f9e7cd82-a407-4a20-89ee-f4dc668b0cbe/",
"title": "Michael Montgomery"
},
"submitted_files_timestamp": "2023-12-05T18:46:02.763276+00:00",
"summary": "Variant FlowFISH",
"uuid": "f1b6c0a7-db03-46aa-a6ba-0b365cab6e7f"
}