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IGVFDS9445YYVB

released
File Set Type
experimental data
Summary
Parse SPLiT-seq
Assay Term
single-nucleus RNA sequencing assay
Sample Summaries
  • multiplexed sample: left cerebral cortex tissue, female, Mus musculus CASTJ (72 days); left cerebral cortex tissue, male, Mus musculus B6J (72 days); ... and 6 more samples
Protocols
Aliases
ali-mortazavi:B01_13H_nanopore

Sequencing Results

20 items
pod5
Nanopore reads
3
ONT GridION X5
FAW54715
72 GB
Ali Mortazavi, UCI
validated
fastq
reads
3
ONT GridION X5
4.6 GB
Ali Mortazavi, UCI
validated
pod5
Nanopore reads
10
ONT GridION X5
FAW39859
46 GB
Ali Mortazavi, UCI
validated
pod5
Nanopore reads
5
ONT GridION X5
FAW39354
103 GB
Ali Mortazavi, UCI
validated
fastq
reads
2
ONT GridION X5
5.4 GB
Ali Mortazavi, UCI
validated
fastq
reads
10
ONT GridION X5
2.9 GB
Ali Mortazavi, UCI
validated
fastq
reads
9
ONT GridION X5
1.5 GB
Ali Mortazavi, UCI
validated
pod5
Nanopore reads
7
ONT GridION X5
FAW43926
62 GB
Ali Mortazavi, UCI
validated
pod5
Nanopore reads
8
ONT GridION X5
FAW39324
39 GB
Ali Mortazavi, UCI
validated
fastq
reads
4
ONT GridION X5
4.6 GB
Ali Mortazavi, UCI
validated

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Summary
MultiplexedSample
multiplexed sample: left cerebral cortex tissue, female, Mus musculus CASTJ (72 days); left cerebral cortex tissue, male, Mus musculus B6J (72 days); ... and 6 more samples

Donors

8 items
Aliases
  • ali-mortazavi:108_CASTJ_10F
female
Mus musculus
  • ali-mortazavi:105_CASTJ_10M
male
Mus musculus
  • ali-mortazavi:119_B6J_10M
male
Mus musculus
  • ali-mortazavi:107_CASTJ_10M
male
Mus musculus
  • ali-mortazavi:117_B6J_10M
male
Mus musculus
  • ali-mortazavi:118_B6J_10F
female
Mus musculus
  • ali-mortazavi:106_CASTJ_10F
female
Mus musculus
  • ali-mortazavi:120_B6J_10F
female
Mus musculus

Assay Details

Sequencing Library Types
mRNA enriched

Attribution

Award
HG012077
Principal Investigator(s)
Contact P.I.
Ali Mortazavi
Lab
Ali Mortazavi, UCI