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INDEXED
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MeasurementSet
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IGVFDS9445YYVB
IGVFDS9445YYVB
released
Json view
File Set Type
experimental data
Summary
Parse SPLiT-seq
Assay Term
single-nucleus RNA sequencing assay
Sample Summaries
multiplexed sample: left cerebral cortex tissue, female, Mus musculus CASTJ (72 days); left cerebral cortex tissue, male, Mus musculus B6J (72 days); ... and 6 more samples
Protocols
https://www.protocols.io/view/evercode-wt-v2-2-1-eq2lyj9relx9/v1
https://www.protocols.io/view/protocol-to-isolate-and-fix-nuclei-from-cryopreser-4r3l22y2pl1y/v1
https://www.protocols.io/view/ont-library-prep-for-split-seq-cdna-eq2lyj1xmlx9/v1
Aliases
ali-mortazavi:B01_13H_nanopore
Sequencing Results
20 items
1
2
Accession
File Format
Content Type
Sequencing Run
Associated seqspec Files
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI0601VPZV
pod5
Nanopore reads
3
ONT GridION X5
FAW54715
72 GB
Ali Mortazavi, UCI
validated
IGVFFI1864QUQG
fastq
reads
3
ONT GridION X5
4.6 GB
Ali Mortazavi, UCI
validated
IGVFFI2783NHJJ
pod5
Nanopore reads
10
ONT GridION X5
FAW39859
46 GB
Ali Mortazavi, UCI
validated
IGVFFI3221ZEPY
pod5
Nanopore reads
5
ONT GridION X5
FAW39354
103 GB
Ali Mortazavi, UCI
validated
IGVFFI3448XIOT
fastq
reads
2
ONT GridION X5
5.4 GB
Ali Mortazavi, UCI
validated
IGVFFI3766OUJU
fastq
reads
10
ONT GridION X5
2.9 GB
Ali Mortazavi, UCI
validated
IGVFFI4230BKLF
fastq
reads
9
ONT GridION X5
1.5 GB
Ali Mortazavi, UCI
validated
IGVFFI5646MVPY
pod5
Nanopore reads
7
ONT GridION X5
FAW43926
62 GB
Ali Mortazavi, UCI
validated
IGVFFI5790OVZY
pod5
Nanopore reads
8
ONT GridION X5
FAW39324
39 GB
Ali Mortazavi, UCI
validated
IGVFFI5928VRYG
fastq
reads
4
ONT GridION X5
4.6 GB
Ali Mortazavi, UCI
validated
Samples
Donors
Assay Details
Sequencing Library Types
mRNA enriched
Attribution
Award
HG012077
Principal Investigator(s)
Lior Pachter
,
Kim Green
,
Grant MacGregor
,
Ali Mortazavi
,
Barbara Wold
Contact P.I.
Ali Mortazavi
Lab
Ali Mortazavi, UCI