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INDEXED
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MeasurementSet
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IGVFDS9255GFCR
IGVFDS9255GFCR
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This object is in preview status. Metadata is subject to change until this object is released.
File Set Type
experimental data
Summary
Parse SPLiT-seq
Assay Term
single-cell RNA sequencing assay
Sample Summaries
multiplexed sample: Homo sapiens (female) bone marrow cell; Homo sapiens (female) bone marrow cell; ... and 14 more samples
Protocols
https://www.protocols.io/view/parse-evercode-wt-v2-0-1-protocol-university-of-mi-rm7vzbzx2vx1/v1
Aliases
maya-kasowski:Parse_P1_scRNA
Attribution
Maya Kasowski, Stanford
(
HG012076
—
Ansuman Satpathy
)
Sequencing Results (Illumina)
16 items
1
2
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Read Names
Associated seqspec Files
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI0076LGAG
fastq
reads
R1
6
Read 1
Illumina NovaSeq X Plus
3
18 GB
Maya Kasowski, Stanford
validated
IGVFFI0113EYBV
fastq
reads
R2
1
Read 2
Illumina NovaSeq X Plus
3
5.4 GB
Maya Kasowski, Stanford
validated
IGVFFI0155SYDD
fastq
reads
R1
3
Read 1
Illumina NovaSeq X Plus
3
22 GB
Maya Kasowski, Stanford
validated
IGVFFI0454ZUQW
fastq
reads
R1
4
Read 1
Illumina NovaSeq X Plus
3
23 GB
Maya Kasowski, Stanford
validated
IGVFFI1836AZJR
fastq
reads
R1
2
Read 1
Illumina NovaSeq X Plus
3
21 GB
Maya Kasowski, Stanford
validated
IGVFFI1848GBOY
fastq
reads
R2
3
Read 2
Illumina NovaSeq X Plus
3
25 GB
Maya Kasowski, Stanford
validated
IGVFFI2067YIZF
fastq
reads
R2
2
Read 2
Illumina NovaSeq X Plus
3
24 GB
Maya Kasowski, Stanford
validated
IGVFFI3124BKKD
fastq
reads
R2
8
Read 2
Illumina NovaSeq X Plus
3
39 GB
Maya Kasowski, Stanford
validated
IGVFFI4662TMKF
fastq
reads
R2
5
Read 2
Illumina NovaSeq X Plus
3
18 GB
Maya Kasowski, Stanford
validated
IGVFFI6303QCPP
fastq
reads
R1
5
Read 1
Illumina NovaSeq X Plus
3
16 GB
Maya Kasowski, Stanford
validated
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Associated Construct Library Sets
Summary
IGVFSM3160GZYX
MultiplexedSample
bone marrow
multiplexed sample: Homo sapiens (female) bone marrow cell; Homo sapiens (female) bone marrow cell; ... and 14 more samples
Donors
15 items
1
2
Accession
Aliases
Sex
Taxa
IGVFDO0898EWTR
maya-kasowski:donor_4238
male
Homo sapiens
IGVFDO0903GCXW
maya-kasowski:donor_4463
female
Homo sapiens
IGVFDO1129QRIW
maya-kasowski:donor_4371
male
Homo sapiens
IGVFDO2417NVHU
maya-kasowski:donor_4352
female
Homo sapiens
IGVFDO3127CQWI
maya-kasowski:donor_4146
female
Homo sapiens
IGVFDO3656DWZS
maya-kasowski:donor_4080
female
Homo sapiens
IGVFDO4084QBKB
maya-kasowski:donor_4522
male
Homo sapiens
IGVFDO4822HOJJ
maya-kasowski:donor_4395
female
Homo sapiens
IGVFDO5779BART
maya-kasowski:donor_4535
male
Homo sapiens
IGVFDO6383SRAQ
maya-kasowski:donor_4065
male
Homo sapiens