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INDEXED
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MeasurementSet
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IGVFDS9255GFCR
IGVFDS9255GFCR
preview
GRU
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This object is in preview status. Metadata is subject to change until this object is released.
File Set Type
experimental data
Summary
Parse SPLiT-seq
Assay Term
single-cell RNA sequencing assay
Sample Summaries
multiplexed sample: Homo sapiens (female) bone marrow cell; Homo sapiens (female) bone marrow cell; ... and 14 more samples
Protocols
https://www.protocols.io/view/parse-evercode-wt-v2-0-1-protocol-university-of-mi-rm7vzbzx2vx1/v1
Aliases
maya-kasowski:Parse_P1_scRNA
Attribution
Maya Kasowski, Stanford
(
HG012076
—
Ansuman Satpathy
)
Sequencing Results (Illumina)
16 items
1
2
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Read Names
Associated seqspec Files
Sequence Specification Document
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI0076LGAG
fastq
reads
R1
6
Read 1
Illumina NovaSeq X Plus
3
18 GB
Maya Kasowski, Stanford
validated
IGVFFI0113EYBV
fastq
reads
R2
1
Read 2
Illumina NovaSeq X Plus
3
5.4 GB
Maya Kasowski, Stanford
validated
IGVFFI0155SYDD
fastq
reads
R1
3
Read 1
Illumina NovaSeq X Plus
3
22 GB
Maya Kasowski, Stanford
validated
IGVFFI0454ZUQW
fastq
reads
R1
4
Read 1
Illumina NovaSeq X Plus
3
23 GB
Maya Kasowski, Stanford
validated
IGVFFI1836AZJR
fastq
reads
R1
2
Read 1
Illumina NovaSeq X Plus
3
21 GB
Maya Kasowski, Stanford
validated
IGVFFI1848GBOY
fastq
reads
R2
3
Read 2
Illumina NovaSeq X Plus
3
25 GB
Maya Kasowski, Stanford
validated
IGVFFI2067YIZF
fastq
reads
R2
2
Read 2
Illumina NovaSeq X Plus
3
24 GB
Maya Kasowski, Stanford
validated
IGVFFI3124BKKD
fastq
reads
R2
8
Read 2
Illumina NovaSeq X Plus
3
39 GB
Maya Kasowski, Stanford
validated
IGVFFI4662TMKF
fastq
reads
R2
5
Read 2
Illumina NovaSeq X Plus
3
18 GB
Maya Kasowski, Stanford
validated
IGVFFI6303QCPP
fastq
reads
R1
5
Read 1
Illumina NovaSeq X Plus
3
16 GB
Maya Kasowski, Stanford
validated
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Associated Construct Library Sets
Summary
IGVFSM3160GZYX
MultiplexedSample
bone marrow
multiplexed sample: Homo sapiens (female) bone marrow cell; Homo sapiens (female) bone marrow cell; ... and 14 more samples
Donors
15 items
1
2
Accession
Aliases
Sex
Taxa
IGVFDO0898EWTR
maya-kasowski:donor_4238
male
Homo sapiens
IGVFDO0903GCXW
maya-kasowski:donor_4463
female
Homo sapiens
IGVFDO1129QRIW
maya-kasowski:donor_4371
male
Homo sapiens
IGVFDO2417NVHU
maya-kasowski:donor_4352
female
Homo sapiens
IGVFDO3127CQWI
maya-kasowski:donor_4146
female
Homo sapiens
IGVFDO3656DWZS
maya-kasowski:donor_4080
female
Homo sapiens
IGVFDO4084QBKB
maya-kasowski:donor_4522
male
Homo sapiens
IGVFDO4822HOJJ
maya-kasowski:donor_4395
female
Homo sapiens
IGVFDO5779BART
maya-kasowski:donor_4535
male
Homo sapiens
IGVFDO6383SRAQ
maya-kasowski:donor_4065
male
Homo sapiens