{
"@context": "/terms/",
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"MeasurementSet",
"FileSet",
"Item"
],
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"aliases": [
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],
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"@id": "/assay-terms/OBI_0002631/",
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],
"status": "released",
"term_name": "single-cell RNA sequencing assay"
},
"audit": {
"INTERNAL_ACTION": [
{
"category": "mismatched status",
"detail": "Preview multiplexed sample [IGVFSM3160GZYX](/multiplexed-samples/IGVFSM3160GZYX/) has in progress subobject tabular file [IGVFFI6112DPMO](/tabular-files/IGVFFI6112DPMO/).",
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"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/multiplexed-samples/IGVFSM3160GZYX/"
}
],
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{
"category": "missing sequence specification",
"detail": "Measurement set [IGVFDS9255GFCR](/measurement-sets/IGVFDS9255GFCR/) has sequence file(s): [IGVFFI0113EYBV](/sequence-files/IGVFFI0113EYBV/), [IGVFFI2067YIZF](/sequence-files/IGVFFI2067YIZF/), [IGVFFI3124BKKD](/sequence-files/IGVFFI3124BKKD/), [IGVFFI6303QCPP](/sequence-files/IGVFFI6303QCPP/), [IGVFFI0155SYDD](/sequence-files/IGVFFI0155SYDD/), [IGVFFI8083OVOX](/sequence-files/IGVFFI8083OVOX/), [IGVFFI1836AZJR](/sequence-files/IGVFFI1836AZJR/), [IGVFFI9443VGCL](/sequence-files/IGVFFI9443VGCL/), [IGVFFI8740ZZOK](/sequence-files/IGVFFI8740ZZOK/), [IGVFFI1848GBOY](/sequence-files/IGVFFI1848GBOY/), [IGVFFI0454ZUQW](/sequence-files/IGVFFI0454ZUQW/), [IGVFFI8926JMEO](/sequence-files/IGVFFI8926JMEO/), [IGVFFI4662TMKF](/sequence-files/IGVFFI4662TMKF/), [IGVFFI0076LGAG](/sequence-files/IGVFFI0076LGAG/), [IGVFFI7558FJHJ](/sequence-files/IGVFFI7558FJHJ/), [IGVFFI9156PJKG](/sequence-files/IGVFFI9156PJKG/) which do not have any `seqspecs`. Sequence files in a file set associated with single cell data are expected to link to a sequence specification file.",
"level": 50,
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"path": "/measurement-sets/IGVFDS9255GFCR/"
},
{
"category": "missing strand specificity",
"detail": "Measurement set [IGVFDS9255GFCR](/measurement-sets/IGVFDS9255GFCR/) is missing required `strand_specificity`. Single-cell assays are expected to specify strand specificity.",
"level": 50,
"level_name": "NOT_COMPLIANT",
"name": "audit_missing_strand_specificity",
"path": "/measurement-sets/IGVFDS9255GFCR/"
},
{
"category": "missing barcode onlist",
"detail": "Measurement set [IGVFDS9255GFCR](/measurement-sets/IGVFDS9255GFCR/) has an `assay_term` of single-cell RNA sequencing assay but no `onlist_files` nor `onlist_methods`. Measurement sets to be processed via the single cell uniform pipeline are expected to have onlist files and onlist methods indicated.",
"level": 50,
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"name": "audit_onlist",
"path": "/measurement-sets/IGVFDS9255GFCR/"
}
],
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{
"category": "missing analysis",
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}
]
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