{
"@context": "/terms/",
"@id": "/measurement-sets/IGVFDS9179GDAL/",
"@type": [
"MeasurementSet",
"FileSet",
"Item"
],
"accession": "IGVFDS9179GDAL",
"aliases": [
"jesse-engreitz:230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep1-FFrep4-BinD_AmpliconSequencing"
],
"assay_term": {
"@id": "/assay-terms/OBI_0003661/",
"assay_slims": [
"CRISPR screens"
],
"status": "released",
"term_name": "in vitro CRISPR screen using flow cytometry"
},
"audit": {
"INTERNAL_ACTION": [
{
"category": "mismatched status",
"detail": "Released in vitro system [IGVFSM5444NCSW](/in-vitro-systems/IGVFSM5444NCSW/) has in progress subobject construct library set [IGVFDS2374NXLW](/construct-library-sets/IGVFDS2374NXLW/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/in-vitro-systems/IGVFSM5444NCSW/"
},
{
"category": "missing publication",
"detail": "In vitro system [IGVFSM5444NCSW](/in-vitro-systems/IGVFSM5444NCSW/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_sample_missing_publication",
"path": "/in-vitro-systems/IGVFSM5444NCSW/"
},
{
"category": "missing publication",
"detail": "Measurement set [IGVFDS9179GDAL](/measurement-sets/IGVFDS9179GDAL/) has no `publications`. Released and archived file sets are expected to be associated with a publication.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_file_set_missing_publication",
"path": "/measurement-sets/IGVFDS9179GDAL/"
},
{
"category": "missing sequencing kit",
"detail": "Measurement set [IGVFDS9179GDAL](/measurement-sets/IGVFDS9179GDAL/) has sequence file(s) [IGVFFI2244BTOF](/sequence-files/IGVFFI2244BTOF/), [IGVFFI6599JKLJ](/sequence-files/IGVFFI6599JKLJ/), [IGVFFI1217KOJK](/sequence-files/IGVFFI1217KOJK/), [IGVFFI4951SNII](/sequence-files/IGVFFI4951SNII/), [IGVFFI6559LLBI](/sequence-files/IGVFFI6559LLBI/), [IGVFFI9087XVLR](/sequence-files/IGVFFI9087XVLR/), [IGVFFI5517GAHE](/sequence-files/IGVFFI5517GAHE/), [IGVFFI7361YJHD](/sequence-files/IGVFFI7361YJHD/), [IGVFFI7442VHHW](/sequence-files/IGVFFI7442VHHW/), [IGVFFI4358DKGC](/sequence-files/IGVFFI4358DKGC/), [IGVFFI1975JPXT](/sequence-files/IGVFFI1975JPXT/), [IGVFFI5915MEHI](/sequence-files/IGVFFI5915MEHI/), [IGVFFI6704IIUL](/sequence-files/IGVFFI6704IIUL/), [IGVFFI0858VWQU](/sequence-files/IGVFFI0858VWQU/), [IGVFFI0980IGCD](/sequence-files/IGVFFI0980IGCD/), [IGVFFI4898EWIM](/sequence-files/IGVFFI4898EWIM/), [IGVFFI7922HVZG](/sequence-files/IGVFFI7922HVZG/), [IGVFFI0884RFXL](/sequence-files/IGVFFI0884RFXL/), [IGVFFI3000KQBI](/sequence-files/IGVFFI3000KQBI/), [IGVFFI9882GMSE](/sequence-files/IGVFFI9882GMSE/), [IGVFFI4698YWHD](/sequence-files/IGVFFI4698YWHD/), [IGVFFI2623NSIA](/sequence-files/IGVFFI2623NSIA/), [IGVFFI7389AGVT](/sequence-files/IGVFFI7389AGVT/), [IGVFFI3271WXET](/sequence-files/IGVFFI3271WXET/), [IGVFFI7074DZYZ](/sequence-files/IGVFFI7074DZYZ/), [IGVFFI5128QWQL](/sequence-files/IGVFFI5128QWQL/), [IGVFFI9558VTNV](/sequence-files/IGVFFI9558VTNV/), [IGVFFI7876NPNI](/sequence-files/IGVFFI7876NPNI/), [IGVFFI5357QMIU](/sequence-files/IGVFFI5357QMIU/), [IGVFFI9960ZXAA](/sequence-files/IGVFFI9960ZXAA/), [IGVFFI5385MUIK](/sequence-files/IGVFFI5385MUIK/), [IGVFFI6261PITM](/sequence-files/IGVFFI6261PITM/), [IGVFFI3636UOEP](/sequence-files/IGVFFI3636UOEP/), [IGVFFI1171POCR](/sequence-files/IGVFFI1171POCR/), [IGVFFI0294QFIC](/sequence-files/IGVFFI0294QFIC/), [IGVFFI9236XGTC](/sequence-files/IGVFFI9236XGTC/), [IGVFFI6126VHGM](/sequence-files/IGVFFI6126VHGM/), [IGVFFI3159AYZU](/sequence-files/IGVFFI3159AYZU/), [IGVFFI3072WPSN](/sequence-files/IGVFFI3072WPSN/), [IGVFFI7576FKWP](/sequence-files/IGVFFI7576FKWP/), [IGVFFI8371NEKS](/sequence-files/IGVFFI8371NEKS/), [IGVFFI4582HLXI](/sequence-files/IGVFFI4582HLXI/), [IGVFFI5065XJWK](/sequence-files/IGVFFI5065XJWK/), [IGVFFI4764CXHK](/sequence-files/IGVFFI4764CXHK/), [IGVFFI8924MRHN](/sequence-files/IGVFFI8924MRHN/), [IGVFFI3430BOHP](/sequence-files/IGVFFI3430BOHP/), [IGVFFI4103AXFE](/sequence-files/IGVFFI4103AXFE/), [IGVFFI7673OKXZ](/sequence-files/IGVFFI7673OKXZ/) which lack specification of a `sequencing_kit`. Sequence files in a file set associated wtih bulk data should specify a sequencing kit.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_inconsistent_sequencing_kit",
"path": "/measurement-sets/IGVFDS9179GDAL/"
},
{
"category": "missing sequence specification",
"detail": "Measurement set [IGVFDS9179GDAL](/measurement-sets/IGVFDS9179GDAL/) has sequence file(s): [IGVFFI2244BTOF](/sequence-files/IGVFFI2244BTOF/), [IGVFFI6599JKLJ](/sequence-files/IGVFFI6599JKLJ/), [IGVFFI1217KOJK](/sequence-files/IGVFFI1217KOJK/), [IGVFFI4951SNII](/sequence-files/IGVFFI4951SNII/), [IGVFFI6559LLBI](/sequence-files/IGVFFI6559LLBI/), [IGVFFI9087XVLR](/sequence-files/IGVFFI9087XVLR/), [IGVFFI5517GAHE](/sequence-files/IGVFFI5517GAHE/), [IGVFFI7361YJHD](/sequence-files/IGVFFI7361YJHD/), [IGVFFI7442VHHW](/sequence-files/IGVFFI7442VHHW/), [IGVFFI4358DKGC](/sequence-files/IGVFFI4358DKGC/), [IGVFFI1975JPXT](/sequence-files/IGVFFI1975JPXT/), [IGVFFI5915MEHI](/sequence-files/IGVFFI5915MEHI/), [IGVFFI6704IIUL](/sequence-files/IGVFFI6704IIUL/), [IGVFFI0858VWQU](/sequence-files/IGVFFI0858VWQU/), [IGVFFI0980IGCD](/sequence-files/IGVFFI0980IGCD/), [IGVFFI4898EWIM](/sequence-files/IGVFFI4898EWIM/), [IGVFFI7922HVZG](/sequence-files/IGVFFI7922HVZG/), [IGVFFI0884RFXL](/sequence-files/IGVFFI0884RFXL/), [IGVFFI3000KQBI](/sequence-files/IGVFFI3000KQBI/), [IGVFFI9882GMSE](/sequence-files/IGVFFI9882GMSE/), [IGVFFI4698YWHD](/sequence-files/IGVFFI4698YWHD/), [IGVFFI2623NSIA](/sequence-files/IGVFFI2623NSIA/), [IGVFFI7389AGVT](/sequence-files/IGVFFI7389AGVT/), [IGVFFI3271WXET](/sequence-files/IGVFFI3271WXET/), [IGVFFI7074DZYZ](/sequence-files/IGVFFI7074DZYZ/), [IGVFFI5128QWQL](/sequence-files/IGVFFI5128QWQL/), [IGVFFI9558VTNV](/sequence-files/IGVFFI9558VTNV/), [IGVFFI7876NPNI](/sequence-files/IGVFFI7876NPNI/), [IGVFFI5357QMIU](/sequence-files/IGVFFI5357QMIU/), [IGVFFI9960ZXAA](/sequence-files/IGVFFI9960ZXAA/), [IGVFFI5385MUIK](/sequence-files/IGVFFI5385MUIK/), [IGVFFI6261PITM](/sequence-files/IGVFFI6261PITM/), [IGVFFI3636UOEP](/sequence-files/IGVFFI3636UOEP/), [IGVFFI1171POCR](/sequence-files/IGVFFI1171POCR/), [IGVFFI0294QFIC](/sequence-files/IGVFFI0294QFIC/), [IGVFFI9236XGTC](/sequence-files/IGVFFI9236XGTC/), [IGVFFI6126VHGM](/sequence-files/IGVFFI6126VHGM/), [IGVFFI3159AYZU](/sequence-files/IGVFFI3159AYZU/), [IGVFFI3072WPSN](/sequence-files/IGVFFI3072WPSN/), [IGVFFI7576FKWP](/sequence-files/IGVFFI7576FKWP/), [IGVFFI8371NEKS](/sequence-files/IGVFFI8371NEKS/), [IGVFFI4582HLXI](/sequence-files/IGVFFI4582HLXI/), [IGVFFI5065XJWK](/sequence-files/IGVFFI5065XJWK/), [IGVFFI4764CXHK](/sequence-files/IGVFFI4764CXHK/), [IGVFFI8924MRHN](/sequence-files/IGVFFI8924MRHN/), [IGVFFI3430BOHP](/sequence-files/IGVFFI3430BOHP/), [IGVFFI4103AXFE](/sequence-files/IGVFFI4103AXFE/), [IGVFFI7673OKXZ](/sequence-files/IGVFFI7673OKXZ/) which do not have any `seqspecs`. Sequence files in a file set associated with bulk data are expected to link to a sequence specification file.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_missing_seqspec",
"path": "/measurement-sets/IGVFDS9179GDAL/"
}
],
"WARNING": [
{
"category": "missing auxiliary set",
"detail": "Measurement set [IGVFDS9179GDAL](/measurement-sets/IGVFDS9179GDAL/) has no cell sorting `auxiliary_sets`. CRISPR-based measurement sets that utilize flow cytometry are expected to link to a cell sorting auxiliary set.",
"level": 40,
"level_name": "WARNING",
"name": "audit_missing_auxiliary_set",
"path": "/measurement-sets/IGVFDS9179GDAL/"
}
]
},
"award": {
"@id": "/awards/HG011972/",
"component": "functional characterization",
"contact_pi": {
"@id": "/users/6c75dbfa-635e-4a7a-8ec8-9e51e9c380a4/",
"title": "Jesse Engreitz"
},
"title": "Stanford Center for Connecting DNA Variants to Function and Phenotype"
},
"construct_library_sets": [
{
"@id": "/construct-library-sets/IGVFDS2374NXLW/",
"accession": "IGVFDS2374NXLW",
"file_set_type": "guide library",
"status": "in progress",
"summary": "guide (sgRNA) library targeting sequence variants in a genomic locus"
}
],
"control_file_sets": [
{
"@id": "/measurement-sets/IGVFDS4989HPTW/",
"accession": "IGVFDS4989HPTW",
"aliases": [
"jesse-engreitz:230531S019-THP1-P151-Amp_PPIF_enhancer-THP1-PE2_Exp1_NegControl_AmpliconSequencing"
],
"status": "released"
}
],
"control_for": [],
"creation_timestamp": "2023-11-30T22:49:07.499923+00:00",
"data_use_limitation_summaries": [
"no certificate"
],
"donors": [
{
"@id": "/human-donors/IGVFDO7359LVPI/",
"accession": "IGVFDO7359LVPI",
"aliases": [
"igvf:donor_of_THP1"
],
"sex": "male",
"status": "released",
"taxa": "Homo sapiens"
}
],
"externally_hosted": false,
"file_set_type": "experimental data",
"files": [
{
"@id": "/sequence-files/IGVFFI2244BTOF/",
"accession": "IGVFFI2244BTOF",
"aliases": [
"jesse-engreitz:230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep1-FFrep4-BinD-PCRrep8_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-05T21:15:31.381271+00:00",
"file_format": "fastq",
"file_size": 6125859,
"href": "/sequence-files/IGVFFI2244BTOF/@@download/IGVFFI2244BTOF.fastq.gz",
"md5sum": "6ee88db06bf1b2ffc7fb643b76197ab0",
"s3_uri": "s3://igvf-files/2023/12/05/42b618c2-09ae-4f97-ab5f-e7cd3c6f1638/IGVFFI2244BTOF.fastq.gz",
"sequencing_platform": {
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"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep1-FFrep4-BinD-PCRrep8_S188_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI6599JKLJ/",
"accession": "IGVFFI6599JKLJ",
"aliases": [
"jesse-engreitz:230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep1-FFrep4-BinD-PCRrep10_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-05T21:09:38.237411+00:00",
"file_format": "fastq",
"file_size": 1532220,
"href": "/sequence-files/IGVFFI6599JKLJ/@@download/IGVFFI6599JKLJ.fastq.gz",
"md5sum": "8280188c9ba16caeb9a4aa49642f3ebc",
"s3_uri": "s3://igvf-files/2023/12/05/b6d73f42-356f-41cd-9790-18beade49e7e/IGVFFI6599JKLJ.fastq.gz",
"sequencing_platform": {
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"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep1-FFrep4-BinD-PCRrep10_S190_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI1217KOJK/",
"accession": "IGVFFI1217KOJK",
"aliases": [
"jesse-engreitz:230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep1-FFrep4-BinD-PCRrep1_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-05T21:09:01.360375+00:00",
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"href": "/sequence-files/IGVFFI1217KOJK/@@download/IGVFFI1217KOJK.fastq.gz",
"md5sum": "28db21104c9cd7b334f0259980f642e7",
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"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep1-FFrep4-BinD-PCRrep1_S91_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI4951SNII/",
"accession": "IGVFFI4951SNII",
"aliases": [
"jesse-engreitz:230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep1-FFrep4-BinD-PCRrep10_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-05T21:10:06.306690+00:00",
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"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
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"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI6559LLBI/",
"accession": "IGVFFI6559LLBI",
"aliases": [
"jesse-engreitz:230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep1-FFrep4-BinD-PCRrep2_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-05T21:11:38.846878+00:00",
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"href": "/sequence-files/IGVFFI6559LLBI/@@download/IGVFFI6559LLBI.fastq.gz",
"md5sum": "63d4e4be3886473b120afe6092315db0",
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"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep1-FFrep4-BinD-PCRrep2_S92_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI9087XVLR/",
"accession": "IGVFFI9087XVLR",
"aliases": [
"jesse-engreitz:230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep1-FFrep4-BinD-PCRrep7_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-05T21:14:53.913158+00:00",
"file_format": "fastq",
"file_size": 5827789,
"href": "/sequence-files/IGVFFI9087XVLR/@@download/IGVFFI9087XVLR.fastq.gz",
"md5sum": "6f472c6c3f1c2304356218e8843b346a",
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"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep1-FFrep4-BinD-PCRrep7_S187_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI5517GAHE/",
"accession": "IGVFFI5517GAHE",
"aliases": [
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],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-05T21:11:11.404978+00:00",
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"term_name": "Illumina NextSeq 550"
},
"status": "released",
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"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI7361YJHD/",
"accession": "IGVFFI7361YJHD",
"aliases": [
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],
"content_type": "reads",
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"creation_timestamp": "2023-12-05T21:15:50.340184+00:00",
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"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep1-FFrep4-BinD-PCRrep9_S189_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI7442VHHW/",
"accession": "IGVFFI7442VHHW",
"aliases": [
"jesse-engreitz:230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep1-FFrep4-BinD-PCRrep10_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-05T21:09:56.937759+00:00",
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"href": "/sequence-files/IGVFFI7442VHHW/@@download/IGVFFI7442VHHW.fastq.gz",
"md5sum": "e52fcd80d0548dd5dc32ebdd64b3d092",
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"sequencing_platform": {
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"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep1-FFrep4-BinD-PCRrep10_S190_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI4358DKGC/",
"accession": "IGVFFI4358DKGC",
"aliases": [
"jesse-engreitz:230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep1-FFrep4-BinD-PCRrep3_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-05T21:12:34.750986+00:00",
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"s3_uri": "s3://igvf-files/2023/12/05/a2623467-7109-4989-897e-784f3c7bc769/IGVFFI4103AXFE.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep1-FFrep4-BinD-PCRrep6_S96_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI7673OKXZ/",
"accession": "IGVFFI7673OKXZ",
"aliases": [
"jesse-engreitz:230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep1-FFrep4-BinD-PCRrep1_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-05T21:09:19.727248+00:00",
"file_format": "fastq",
"file_size": 3309438,
"href": "/sequence-files/IGVFFI7673OKXZ/@@download/IGVFFI7673OKXZ.fastq.gz",
"md5sum": "e6847ffb5dcd9652e6a3852c950b8589",
"s3_uri": "s3://igvf-files/2023/12/05/a237916e-58c0-4d4f-8ad0-ba569034996f/IGVFFI7673OKXZ.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep1-FFrep4-BinD-PCRrep1_S91_R1_001.fastq.gz",
"upload_status": "validated"
}
],
"input_for": [
"/analysis-sets/IGVFDS5031MNRR/"
],
"lab": {
"@id": "/labs/jesse-engreitz/",
"title": "Jesse Engreitz, Stanford"
},
"notes": "The readout 2e41e624-f6c7-4f0c-a07e-bc36cefdca39 was removed from this measurement set. This measurement set previously used Variant FlowFISH as a preferred_assay_title, but this enum is now removed. So it has been defaulted to Variant-EFFECTS.",
"preferred_assay_title": "Variant-EFFECTS",
"protocols": [
"https://www.protocols.io/view/flowfish-with-primeflow-36wgq3q4olk5/v1"
],
"release_timestamp": "2023-12-20T23:07:04.445437+00:00",
"samples": [
{
"@id": "/in-vitro-systems/IGVFSM5444NCSW/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM5444NCSW",
"aliases": [
"jesse-engreitz:230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep1-FFrep4-BinD"
],
"classifications": [
"cell line"
],
"institutional_certificates": [],
"modifications": [
{
"@id": "/crispr-modifications/fc6bc0b3-a064-47d0-b95d-a9af14bb1624/",
"modality": "prime editing",
"status": "released"
}
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0001253/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"aliases": [
"igvf:THP-1"
],
"status": "released",
"summary": "THP-1",
"term_name": "THP-1"
}
],
"status": "released",
"summary": "Homo sapiens (male) THP-1 cell line (sorting details: FACS bin for 76-100% expression of PPIF) modified with CRISPR prime editing Sp-nCas9-M-MLV RT (PE2), transduced (lentivirus) with a guide library",
"taxa": "Homo sapiens"
}
],
"schema_version": "26",
"status": "released",
"submitted_by": {
"@id": "/users/f9e7cd82-a407-4a20-89ee-f4dc668b0cbe/",
"title": "Michael Montgomery"
},
"submitted_files_timestamp": "2023-12-05T21:09:01.360375+00:00",
"summary": "CRISPR prime editing Variant-EFFECTS sorted on the expression of PPIF integrating a guide (sgRNA) library targeting sequence variants in a genomic locus",
"targeted_genes": [
{
"@id": "/genes/ENSG00000108179/",
"geneid": "ENSG00000108179",
"name": "peptidylprolyl isomerase F",
"status": "released",
"symbol": "PPIF",
"synonyms": [
"PPIase F",
"peptidylprolyl isomerase F",
"Cyp-D",
"peptidyl-prolyl cis-trans isomerase F, mitochondrial",
"PPIF",
"CyP-M",
"cyclophilin F",
"peptidyl-prolyl cis-trans isomerase, mitochondrial",
"cyclophilin 3",
"cyclophilin D",
"rotamase F",
"mitochondrial cyclophilin",
"CypD",
"CYP3"
]
}
],
"uuid": "631d271c-f17e-4e5b-ae29-e9723134ac13"
}