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IGVFDS9120JYMC

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This object is in preview status. Metadata is subject to change until this object is released.
File Set Type
experimental data
Summary
single-nucleus ATAC-seq (10x multiome)
Assay Term
single-nucleus ATAC-seq
Sample Summaries
  • multiplexed sample: Homo sapiens (female, 34.0 years) peripheral blood mononuclear cell; Homo sapiens (male, 23.0 years) peripheral blood mononuclear cell; ... and 18 more samples
Protocols
Aliases
jimmie-ye:XX15-SC3_snATAC

Sequencing Results (Illumina)

16 items
Read Names
fastq
reads
I1
220
1.7 GB
Jimmie Ye, UCSF
validated
fastq
reads
R3
220
Read 2
11 GB
Jimmie Ye, UCSF
validated
fastq
reads
I1
221
1.7 GB
Jimmie Ye, UCSF
validated
fastq
reads
R1
221
Read 1
7.3 GB
Jimmie Ye, UCSF
validated
fastq
reads
R1
218
Read 1
7.5 GB
Jimmie Ye, UCSF
validated
fastq
reads
R2
218
Barcode index
4.1 GB
Jimmie Ye, UCSF
validated
fastq
reads
R3
221
Read 2
11 GB
Jimmie Ye, UCSF
validated
fastq
reads
R2
221
Barcode index
4.0 GB
Jimmie Ye, UCSF
validated
fastq
reads
R2
219
Barcode index
4.2 GB
Jimmie Ye, UCSF
validated
fastq
reads
R3
219
Read 2
12 GB
Jimmie Ye, UCSF
validated

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Associated Construct Library Sets
Summary
MultiplexedSample
multiplexed sample: Homo sapiens (female, 34.0 years) peripheral blood mononuclear cell; Homo sapiens (male, 23.0 years) peripheral blood mononuclear cell; ... and 18 more samples

Donors

20 items
Aliases
  • jimmie-ye:donor_355
female
Homo sapiens
  • jimmie-ye:donor_311
female
Homo sapiens
  • jimmie-ye:donor_271
male
Homo sapiens
  • jimmie-ye:donor_120
female
Homo sapiens
  • jimmie-ye:donor_244
male
Homo sapiens
  • jimmie-ye:donor_266
male
Homo sapiens
  • jimmie-ye:donor_127
male
Homo sapiens
  • jimmie-ye:donor_344
female
Homo sapiens
  • jimmie-ye:donor_117
female
Homo sapiens
  • jimmie-ye:donor_217
male
Homo sapiens

Related Multiome Datasets

1 item
Accession
Type
Summary
Aliases
Lab
MeasurementSet
single-nucleus RNA sequencing assay (10x multiome)
  • jimmie-ye:XX15-SC3_snRNA
Jimmie Ye, UCSF

Attribution

Award
HG012076
Principal Investigator(s)
Contact P.I.
Ansuman Satpathy
Lab
Jimmie Ye, UCSF