{
"@context": "/terms/",
"@id": "/measurement-sets/IGVFDS9120JYMC/",
"@type": [
"MeasurementSet",
"FileSet",
"Item"
],
"accession": "IGVFDS9120JYMC",
"aliases": [
"jimmie-ye:XX15-SC3_snATAC"
],
"assay_term": {
"@id": "/assay-terms/OBI_0002762/",
"assay_slims": [
"chromatin accessibility"
],
"status": "released",
"term_name": "single-nucleus ATAC-seq"
},
"audit": {
"INTERNAL_ACTION": [
{
"category": "mismatched status",
"detail": "Preview multiplexed sample [IGVFSM5737IONT](/multiplexed-samples/IGVFSM5737IONT/) has in progress subobject tabular file [IGVFFI3034SAEM](/tabular-files/IGVFFI3034SAEM/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/multiplexed-samples/IGVFSM5737IONT/"
}
]
},
"award": {
"@id": "/awards/HG012076/",
"component": "mapping",
"contact_pi": {
"@id": "/users/eae4c275-1e07-45e4-ae67-3e437a8680bb/",
"title": "Ansuman Satpathy"
},
"title": "Single-cell Mapping Center for Human Regulatory Elements and Gene Activity"
},
"control_for": [],
"controlled_access": true,
"creation_timestamp": "2025-03-07T23:20:19.355447+00:00",
"data_use_limitation_summaries": [
"GRU"
],
"donors": [
{
"@id": "/human-donors/IGVFDO7916YRKT/",
"accession": "IGVFDO7916YRKT",
"aliases": [
"jimmie-ye:donor_186"
],
"sex": "male",
"status": "preview",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO7109MRSV/",
"accession": "IGVFDO7109MRSV",
"aliases": [
"jimmie-ye:donor_265"
],
"sex": "male",
"status": "preview",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO6494ETQD/",
"accession": "IGVFDO6494ETQD",
"aliases": [
"jimmie-ye:donor_261"
],
"sex": "male",
"status": "preview",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO6057RTOI/",
"accession": "IGVFDO6057RTOI",
"aliases": [
"jimmie-ye:donor_117"
],
"sex": "female",
"status": "preview",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO9941UDYG/",
"accession": "IGVFDO9941UDYG",
"aliases": [
"jimmie-ye:donor_272"
],
"sex": "female",
"status": "preview",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO2417TCIH/",
"accession": "IGVFDO2417TCIH",
"aliases": [
"jimmie-ye:donor_266"
],
"sex": "male",
"status": "preview",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO0287RIWJ/",
"accession": "IGVFDO0287RIWJ",
"aliases": [
"jimmie-ye:donor_311"
],
"sex": "female",
"status": "preview",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO7463BCHH/",
"accession": "IGVFDO7463BCHH",
"aliases": [
"jimmie-ye:donor_270"
],
"sex": "female",
"status": "preview",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO6487UZPC/",
"accession": "IGVFDO6487UZPC",
"aliases": [
"jimmie-ye:donor_300"
],
"sex": "male",
"status": "preview",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO6225VCFJ/",
"accession": "IGVFDO6225VCFJ",
"aliases": [
"jimmie-ye:donor_217"
],
"sex": "male",
"status": "preview",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO1881RNKM/",
"accession": "IGVFDO1881RNKM",
"aliases": [
"jimmie-ye:donor_120"
],
"sex": "female",
"status": "preview",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO2696HGER/",
"accession": "IGVFDO2696HGER",
"aliases": [
"jimmie-ye:donor_127"
],
"sex": "male",
"status": "preview",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO0082JSOB/",
"accession": "IGVFDO0082JSOB",
"aliases": [
"jimmie-ye:donor_355"
],
"sex": "female",
"status": "preview",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO9746GLBM/",
"accession": "IGVFDO9746GLBM",
"aliases": [
"jimmie-ye:donor_279"
],
"sex": "male",
"status": "preview",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO7490MDYK/",
"accession": "IGVFDO7490MDYK",
"aliases": [
"jimmie-ye:donor_118"
],
"sex": "female",
"status": "preview",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO5328MCOF/",
"accession": "IGVFDO5328MCOF",
"aliases": [
"jimmie-ye:donor_344"
],
"sex": "female",
"status": "preview",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO7264PRBG/",
"accession": "IGVFDO7264PRBG",
"aliases": [
"jimmie-ye:donor_240"
],
"sex": "female",
"status": "preview",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO8167OHGI/",
"accession": "IGVFDO8167OHGI",
"aliases": [
"jimmie-ye:donor_262"
],
"sex": "female",
"status": "preview",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO1496BYOF/",
"accession": "IGVFDO1496BYOF",
"aliases": [
"jimmie-ye:donor_271"
],
"sex": "male",
"status": "preview",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO2392CNUG/",
"accession": "IGVFDO2392CNUG",
"aliases": [
"jimmie-ye:donor_244"
],
"sex": "male",
"status": "preview",
"taxa": "Homo sapiens"
}
],
"externally_hosted": false,
"file_set_type": "experimental data",
"files": [
{
"@id": "/sequence-files/IGVFFI0259HCRF/",
"accession": "IGVFFI0259HCRF",
"aliases": [
"jimmie-ye:XX15-SC3_snATAC_S2_R3"
],
"content_type": "reads",
"controlled_access": true,
"creation_timestamp": "2025-03-10T22:08:06.119342+00:00",
"file_format": "fastq",
"file_size": 11297274094,
"href": "/sequence-files/IGVFFI0259HCRF/@@download/IGVFFI0259HCRF.fastq.gz",
"s3_uri": "s3://igvf-restricted-files/2025/03/10/4ab07c16-a5cd-4067-bea4-4d7577618a43/IGVFFI0259HCRF.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "preview",
"submitted_file_name": "production_data/xhlt1/data/single_cell_ATAC/raw/XHLT1-POOL-XX15-SC3/AH7MYFDSX3_ICJY08/XHLT1-POOL-XX15-SC3-ATAC_S6_L003_R3_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI6505EBPG/",
"accession": "IGVFFI6505EBPG",
"aliases": [
"jimmie-ye:XX15-SC3_snATAC_S1_R1"
],
"content_type": "reads",
"controlled_access": true,
"creation_timestamp": "2025-03-10T22:03:58.480179+00:00",
"file_format": "fastq",
"file_size": 7712224065,
"href": "/sequence-files/IGVFFI6505EBPG/@@download/IGVFFI6505EBPG.fastq.gz",
"s3_uri": "s3://igvf-restricted-files/2025/03/10/90f63903-a79a-4dbd-8978-354f8a70137f/IGVFFI6505EBPG.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "preview",
"submitted_file_name": "production_data/xhlt1/data/single_cell_ATAC/raw/XHLT1-POOL-XX15-SC3/AH7MYFDSX3_ICJY08/XHLT1-POOL-XX15-SC3-ATAC_S6_L002_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI4269GBWO/",
"accession": "IGVFFI4269GBWO",
"aliases": [
"jimmie-ye:XX15-SC3_snATAC_S1_R2"
],
"content_type": "reads",
"controlled_access": true,
"creation_timestamp": "2025-03-10T22:04:44.607974+00:00",
"file_format": "fastq",
"file_size": 4164643482,
"href": "/sequence-files/IGVFFI4269GBWO/@@download/IGVFFI4269GBWO.fastq.gz",
"s3_uri": "s3://igvf-restricted-files/2025/03/10/dd40ad2b-a2b7-4e9a-a41a-c9b899a9c908/IGVFFI4269GBWO.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "preview",
"submitted_file_name": "production_data/xhlt1/data/single_cell_ATAC/raw/XHLT1-POOL-XX15-SC3/AH7MYFDSX3_ICJY08/XHLT1-POOL-XX15-SC3-ATAC_S6_L002_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI1890WMZX/",
"accession": "IGVFFI1890WMZX",
"aliases": [
"jimmie-ye:XX15-SC3_snATAC_S0_R1"
],
"content_type": "reads",
"controlled_access": true,
"creation_timestamp": "2025-03-10T22:01:13.138669+00:00",
"file_format": "fastq",
"file_size": 7524101125,
"href": "/sequence-files/IGVFFI1890WMZX/@@download/IGVFFI1890WMZX.fastq.gz",
"s3_uri": "s3://igvf-restricted-files/2025/03/10/f18c6e7d-978f-411b-8700-7863e3eb574a/IGVFFI1890WMZX.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "preview",
"submitted_file_name": "production_data/xhlt1/data/single_cell_ATAC/raw/XHLT1-POOL-XX15-SC3/AH7MYFDSX3_ICJY08/XHLT1-POOL-XX15-SC3-ATAC_S6_L001_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI3363SETS/",
"accession": "IGVFFI3363SETS",
"aliases": [
"jimmie-ye:XX15-SC3_snATAC_S3_R3"
],
"content_type": "reads",
"controlled_access": true,
"creation_timestamp": "2025-03-10T22:10:47.466999+00:00",
"file_format": "fastq",
"file_size": 11101913482,
"href": "/sequence-files/IGVFFI3363SETS/@@download/IGVFFI3363SETS.fastq.gz",
"s3_uri": "s3://igvf-restricted-files/2025/03/10/4b44362e-d1a3-4a85-8fbf-dbef77660c32/IGVFFI3363SETS.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "preview",
"submitted_file_name": "production_data/xhlt1/data/single_cell_ATAC/raw/XHLT1-POOL-XX15-SC3/AH7MYFDSX3_ICJY08/XHLT1-POOL-XX15-SC3-ATAC_S6_L004_R3_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI6838VYCR/",
"accession": "IGVFFI6838VYCR",
"aliases": [
"jimmie-ye:XX15-SC3_snATAC_S2_R1"
],
"content_type": "reads",
"controlled_access": true,
"creation_timestamp": "2025-03-10T22:06:44.990493+00:00",
"file_format": "fastq",
"file_size": 7411661923,
"href": "/sequence-files/IGVFFI6838VYCR/@@download/IGVFFI6838VYCR.fastq.gz",
"s3_uri": "s3://igvf-restricted-files/2025/03/10/d9f1cea2-fc5e-4e68-bb9e-d04993963183/IGVFFI6838VYCR.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "preview",
"submitted_file_name": "production_data/xhlt1/data/single_cell_ATAC/raw/XHLT1-POOL-XX15-SC3/AH7MYFDSX3_ICJY08/XHLT1-POOL-XX15-SC3-ATAC_S6_L003_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI5680SGUB/",
"accession": "IGVFFI5680SGUB",
"aliases": [
"jimmie-ye:XX15-SC3_snATAC_S1_R3"
],
"content_type": "reads",
"controlled_access": true,
"creation_timestamp": "2025-03-10T22:05:23.866251+00:00",
"file_format": "fastq",
"file_size": 11861321001,
"href": "/sequence-files/IGVFFI5680SGUB/@@download/IGVFFI5680SGUB.fastq.gz",
"s3_uri": "s3://igvf-restricted-files/2025/03/10/b1ecb9db-d497-46e5-9f1f-a2124b72342c/IGVFFI5680SGUB.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "preview",
"submitted_file_name": "production_data/xhlt1/data/single_cell_ATAC/raw/XHLT1-POOL-XX15-SC3/AH7MYFDSX3_ICJY08/XHLT1-POOL-XX15-SC3-ATAC_S6_L002_R3_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI9519HLWT/",
"accession": "IGVFFI9519HLWT",
"aliases": [
"jimmie-ye:XX15-SC3_snATAC_S0_I1"
],
"content_type": "reads",
"controlled_access": true,
"creation_timestamp": "2025-03-10T22:00:50.542566+00:00",
"file_format": "fastq",
"file_size": 1770368732,
"href": "/sequence-files/IGVFFI9519HLWT/@@download/IGVFFI9519HLWT.fastq.gz",
"s3_uri": "s3://igvf-restricted-files/2025/03/10/2684150e-1f04-4758-8ab9-e28a7e2abbd9/IGVFFI9519HLWT.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "preview",
"submitted_file_name": "production_data/xhlt1/data/single_cell_ATAC/raw/XHLT1-POOL-XX15-SC3/AH7MYFDSX3_ICJY08/XHLT1-POOL-XX15-SC3-ATAC_S6_L001_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI9383UVXP/",
"accession": "IGVFFI9383UVXP",
"aliases": [
"jimmie-ye:XX15-SC3_snATAC_S1_I1"
],
"content_type": "reads",
"controlled_access": true,
"creation_timestamp": "2025-03-10T22:03:34.626670+00:00",
"file_format": "fastq",
"file_size": 1811478605,
"href": "/sequence-files/IGVFFI9383UVXP/@@download/IGVFFI9383UVXP.fastq.gz",
"s3_uri": "s3://igvf-restricted-files/2025/03/10/29010db1-e55b-481e-b7c0-c4139e866891/IGVFFI9383UVXP.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "preview",
"submitted_file_name": "production_data/xhlt1/data/single_cell_ATAC/raw/XHLT1-POOL-XX15-SC3/AH7MYFDSX3_ICJY08/XHLT1-POOL-XX15-SC3-ATAC_S6_L002_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI2434VACB/",
"accession": "IGVFFI2434VACB",
"aliases": [
"jimmie-ye:XX15-SC3_snATAC_S0_R2"
],
"content_type": "reads",
"controlled_access": true,
"creation_timestamp": "2025-03-10T22:01:56.971586+00:00",
"file_format": "fastq",
"file_size": 4100560349,
"href": "/sequence-files/IGVFFI2434VACB/@@download/IGVFFI2434VACB.fastq.gz",
"s3_uri": "s3://igvf-restricted-files/2025/03/10/6862b1df-2ada-4331-af77-3b02a504ff19/IGVFFI2434VACB.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "preview",
"submitted_file_name": "production_data/xhlt1/data/single_cell_ATAC/raw/XHLT1-POOL-XX15-SC3/AH7MYFDSX3_ICJY08/XHLT1-POOL-XX15-SC3-ATAC_S6_L001_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI7379QJNY/",
"accession": "IGVFFI7379QJNY",
"aliases": [
"jimmie-ye:XX15-SC3_snATAC_S0_R3"
],
"content_type": "reads",
"controlled_access": true,
"creation_timestamp": "2025-03-10T22:02:35.924551+00:00",
"file_format": "fastq",
"file_size": 11510909528,
"href": "/sequence-files/IGVFFI7379QJNY/@@download/IGVFFI7379QJNY.fastq.gz",
"s3_uri": "s3://igvf-restricted-files/2025/03/10/f3391acf-9a6d-474b-98cb-bc44cbeeec87/IGVFFI7379QJNY.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "preview",
"submitted_file_name": "production_data/xhlt1/data/single_cell_ATAC/raw/XHLT1-POOL-XX15-SC3/AH7MYFDSX3_ICJY08/XHLT1-POOL-XX15-SC3-ATAC_S6_L001_R3_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI0163UTJE/",
"accession": "IGVFFI0163UTJE",
"aliases": [
"jimmie-ye:XX15-SC3_snATAC_S2_I1"
],
"content_type": "reads",
"controlled_access": true,
"creation_timestamp": "2025-03-10T22:06:23.536078+00:00",
"file_format": "fastq",
"file_size": 1746686627,
"href": "/sequence-files/IGVFFI0163UTJE/@@download/IGVFFI0163UTJE.fastq.gz",
"s3_uri": "s3://igvf-restricted-files/2025/03/10/a73337b9-ef6c-4fb1-8d15-797dfd444dea/IGVFFI0163UTJE.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "preview",
"submitted_file_name": "production_data/xhlt1/data/single_cell_ATAC/raw/XHLT1-POOL-XX15-SC3/AH7MYFDSX3_ICJY08/XHLT1-POOL-XX15-SC3-ATAC_S6_L003_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI6285JHCJ/",
"accession": "IGVFFI6285JHCJ",
"aliases": [
"jimmie-ye:XX15-SC3_snATAC_S2_R2"
],
"content_type": "reads",
"controlled_access": true,
"creation_timestamp": "2025-03-10T22:07:26.522490+00:00",
"file_format": "fastq",
"file_size": 4041733972,
"href": "/sequence-files/IGVFFI6285JHCJ/@@download/IGVFFI6285JHCJ.fastq.gz",
"s3_uri": "s3://igvf-restricted-files/2025/03/10/584a08f7-49c0-45f2-beea-f347c153e627/IGVFFI6285JHCJ.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "preview",
"submitted_file_name": "production_data/xhlt1/data/single_cell_ATAC/raw/XHLT1-POOL-XX15-SC3/AH7MYFDSX3_ICJY08/XHLT1-POOL-XX15-SC3-ATAC_S6_L003_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI0936NYOZ/",
"accession": "IGVFFI0936NYOZ",
"aliases": [
"jimmie-ye:XX15-SC3_snATAC_S3_I1"
],
"content_type": "reads",
"controlled_access": true,
"creation_timestamp": "2025-03-10T22:09:04.606480+00:00",
"file_format": "fastq",
"file_size": 1718706260,
"href": "/sequence-files/IGVFFI0936NYOZ/@@download/IGVFFI0936NYOZ.fastq.gz",
"s3_uri": "s3://igvf-restricted-files/2025/03/10/593f4cbe-6d71-4e66-b995-11d0e94c7a5f/IGVFFI0936NYOZ.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "preview",
"submitted_file_name": "production_data/xhlt1/data/single_cell_ATAC/raw/XHLT1-POOL-XX15-SC3/AH7MYFDSX3_ICJY08/XHLT1-POOL-XX15-SC3-ATAC_S6_L004_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI1204ZRHO/",
"accession": "IGVFFI1204ZRHO",
"aliases": [
"jimmie-ye:XX15-SC3_snATAC_S3_R1"
],
"content_type": "reads",
"controlled_access": true,
"creation_timestamp": "2025-03-10T22:09:26.461763+00:00",
"file_format": "fastq",
"file_size": 7286561824,
"href": "/sequence-files/IGVFFI1204ZRHO/@@download/IGVFFI1204ZRHO.fastq.gz",
"s3_uri": "s3://igvf-restricted-files/2025/03/10/71e8d6c0-c38e-45d8-ad1d-d80bfe57849d/IGVFFI1204ZRHO.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "preview",
"submitted_file_name": "production_data/xhlt1/data/single_cell_ATAC/raw/XHLT1-POOL-XX15-SC3/AH7MYFDSX3_ICJY08/XHLT1-POOL-XX15-SC3-ATAC_S6_L004_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI3389GGVK/",
"accession": "IGVFFI3389GGVK",
"aliases": [
"jimmie-ye:XX15-SC3_snATAC_S3_R2"
],
"content_type": "reads",
"controlled_access": true,
"creation_timestamp": "2025-03-10T22:10:07.787148+00:00",
"file_format": "fastq",
"file_size": 3966082417,
"href": "/sequence-files/IGVFFI3389GGVK/@@download/IGVFFI3389GGVK.fastq.gz",
"s3_uri": "s3://igvf-restricted-files/2025/03/10/08e6d51a-0db2-4095-a2bb-d7b07b39a7fa/IGVFFI3389GGVK.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "preview",
"submitted_file_name": "production_data/xhlt1/data/single_cell_ATAC/raw/XHLT1-POOL-XX15-SC3/AH7MYFDSX3_ICJY08/XHLT1-POOL-XX15-SC3-ATAC_S6_L004_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/configuration-files/IGVFFI8907CCAY/",
"accession": "IGVFFI8907CCAY",
"aliases": [
"jimmie-ye:seqspec-XX15-SC3_snATAC_S0"
],
"content_type": "seqspec",
"creation_timestamp": "2025-03-29T07:33:47.171321+00:00",
"file_format": "yaml",
"file_size": 1504,
"href": "/configuration-files/IGVFFI8907CCAY/@@download/IGVFFI8907CCAY.yaml.gz",
"s3_uri": "s3://igvf-files/2025/03/29/7cf1e695-e4ff-4a3f-a109-a6e0fb7f1335/IGVFFI8907CCAY.yaml.gz",
"status": "in progress",
"submitted_file_name": "dat/processed/igvf_submit/seqspecs/XX15-SC3_snATAC_S0.yaml.gz",
"upload_status": "validated"
},
{
"@id": "/configuration-files/IGVFFI1124DGUY/",
"accession": "IGVFFI1124DGUY",
"aliases": [
"jimmie-ye:seqspec-XX15-SC3_snATAC_S2"
],
"content_type": "seqspec",
"creation_timestamp": "2025-03-29T09:04:04.426890+00:00",
"file_format": "yaml",
"file_size": 1502,
"href": "/configuration-files/IGVFFI1124DGUY/@@download/IGVFFI1124DGUY.yaml.gz",
"s3_uri": "s3://igvf-files/2025/03/29/50344691-159d-49a3-9795-c9085912c8c3/IGVFFI1124DGUY.yaml.gz",
"status": "in progress",
"submitted_file_name": "dat/processed/igvf_submit/seqspecs/XX15-SC3_snATAC_S2.yaml.gz",
"upload_status": "validated"
},
{
"@id": "/configuration-files/IGVFFI5599VNDH/",
"accession": "IGVFFI5599VNDH",
"aliases": [
"jimmie-ye:seqspec-XX15-SC3_snATAC_S3"
],
"content_type": "seqspec",
"creation_timestamp": "2025-03-29T09:57:36.575974+00:00",
"file_format": "yaml",
"file_size": 1503,
"href": "/configuration-files/IGVFFI5599VNDH/@@download/IGVFFI5599VNDH.yaml.gz",
"s3_uri": "s3://igvf-files/2025/03/29/4088f3e7-ec10-495e-b9af-1223ee97899e/IGVFFI5599VNDH.yaml.gz",
"status": "in progress",
"submitted_file_name": "dat/processed/igvf_submit/seqspecs/XX15-SC3_snATAC_S3.yaml.gz",
"upload_status": "validated"
},
{
"@id": "/configuration-files/IGVFFI9495SKEP/",
"accession": "IGVFFI9495SKEP",
"aliases": [
"jimmie-ye:seqspec-XX15-SC3_snATAC_S1"
],
"content_type": "seqspec",
"creation_timestamp": "2025-03-29T09:36:52.845960+00:00",
"file_format": "yaml",
"file_size": 1500,
"href": "/configuration-files/IGVFFI9495SKEP/@@download/IGVFFI9495SKEP.yaml.gz",
"s3_uri": "s3://igvf-files/2025/03/29/15a272ee-fe98-4124-ab7f-1cde2f9771b0/IGVFFI9495SKEP.yaml.gz",
"status": "in progress",
"submitted_file_name": "dat/processed/igvf_submit/seqspecs/XX15-SC3_snATAC_S1.yaml.gz",
"upload_status": "validated"
}
],
"input_for": [
"/analysis-sets/IGVFDS9596HEWM/"
],
"lab": {
"@id": "/labs/jimmie-ye/",
"title": "Jimmie Ye, UCSF"
},
"multiome_size": 2,
"onlist_files": [
"/tabular-files/IGVFFI7587TJLC/"
],
"onlist_method": "no combination",
"preferred_assay_title": "10x multiome",
"protocols": [
"https://www.protocols.io/view/multi-seq-for-multiome-igvf-round-2-experiment-1-dfqp3mvn"
],
"related_multiome_datasets": [
{
"@id": "/measurement-sets/IGVFDS4099RLTS/",
"accession": "IGVFDS4099RLTS",
"status": "preview"
}
],
"samples": [
{
"@id": "/multiplexed-samples/IGVFSM5737IONT/",
"@type": [
"MultiplexedSample",
"Sample",
"Item"
],
"accession": "IGVFSM5737IONT",
"aliases": [
"jimmie-ye:XX15-SC3"
],
"classifications": [
"primary cell",
"multiplexed sample"
],
"disease_terms": [],
"institutional_certificates": [
{
"@id": "/institutional-certificates/d81b266e-6bb3-479e-a738-3d6bf33a6c16/",
"certificate_identifier": "IP115-26",
"controlled_access": true,
"data_use_limitation": "GRU",
"status": "in progress"
}
],
"modifications": [],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"status": "released",
"summary": "peripheral blood mononuclear cell",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "multiplexed sample: Homo sapiens (female, 34.0 years) peripheral blood mononuclear cell; Homo sapiens (male, 23.0 years) peripheral blood mononuclear cell; ... and 18 more samples",
"taxa": "Homo sapiens",
"treatments": []
}
],
"schema_version": "26",
"status": "preview",
"submitted_by": {
"@id": "/users/6df823a5-62f2-4562-94ba-e9285afcfcf4/",
"title": "Marcus Alvarez"
},
"submitted_files_timestamp": "2025-03-10T22:00:50.542566+00:00",
"summary": "single-nucleus ATAC-seq (10x multiome)",
"uuid": "93fd0932-1a26-4ea5-9654-831ec17d9f8a"
}