Home
Home
Search (⌘K or ⌃K)
Data
Resources / Standards
Data Model
About
Help
Sign In
INDEXED
Home
/
MeasurementSet
/
IGVFDS8841TWDX
IGVFDS8841TWDX
preview
Json view
This object is in preview status. Metadata is subject to change until this object is released.
File Set Type
experimental data
Summary
CRISPR interference Perturb-seq integrating a guide (sgRNA) library targeting genes in many genomic loci
Assay Term
in vitro CRISPR screen using single-cell RNA-seq
Sample Summaries
Homo sapiens (female) TeloHAEC cell line modified with CRISPRi Sp-dCas9-KOX1-KRAB, transduced (lentivirus) with a guide library
Protocols
https://www.protocols.io/view/systematic-perturb-seq-to-discover-endothelial-cel-261ged73yv47/v1
Aliases
jesse-engreitz:measurement_set-scRNAseq_2kG_2PMDox2_5
Publications
Convergence of coronary artery disease genes onto endothelial cell programs
Attribution
Jesse Engreitz, Stanford
(
HG011972
—
Jesse Engreitz
)
Sequencing Results (Illumina)
15 items
1
2
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Read Names
Associated seqspec Files
Sequence Specification Document
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI2524TDDH
fastq
reads
R1
1
Illumina NovaSeq 6000
3.0 GB
Jesse Engreitz, Stanford
validated
IGVFFI2897CYDA
fastq
reads
R1
3
Illumina NovaSeq 6000
4.1 GB
Jesse Engreitz, Stanford
validated
IGVFFI3401QKMA
fastq
reads
R2
2
Illumina NovaSeq 6000
5.2 GB
Jesse Engreitz, Stanford
validated
IGVFFI3762BSGQ
fastq
reads
R1
2
Illumina NovaSeq 6000
3.7 GB
Jesse Engreitz, Stanford
validated
IGVFFI3915VCBQ
fastq
reads
I1
2
Illumina NovaSeq 6000
1.0 GB
Jesse Engreitz, Stanford
validated
IGVFFI5193KFUL
fastq
reads
R2
1
Illumina NovaSeq 6000
4.2 GB
Jesse Engreitz, Stanford
validated
IGVFFI5649YCIZ
fastq
reads
I1
5
Illumina NovaSeq 6000
2.7 GB
Jesse Engreitz, Stanford
validated
IGVFFI6094RPZX
fastq
reads
I1
3
Illumina NovaSeq 6000
1.1 GB
Jesse Engreitz, Stanford
validated
IGVFFI6446GHWG
fastq
reads
R1
5
Illumina NovaSeq 6000
9.1 GB
Jesse Engreitz, Stanford
validated
IGVFFI7582WACA
fastq
reads
R2
5
Illumina NovaSeq 6000
12 GB
Jesse Engreitz, Stanford
validated
Samples
1 item
Accession
Type
Sample Terms
Associated Construct Library Sets
Summary
IGVFSM6643KIQQ
InVitroSystem
TeloHAEC
IGVFDS1298TUYG
Homo sapiens (female) TeloHAEC cell line modified with CRISPRi Sp-dCas9-KOX1-KRAB, transduced (lentivirus) with a guide library
Donors
1 item
Accession
Aliases
Sex
Taxa
IGVFDO3459DFTW
igvf:donor_of_teloHAEC
female
Homo sapiens
Associated Construct Library Sets
1 item
Accession
Summary
Library Design Files
IGVFDS1298TUYG
guide (sgRNA) library targeting genes in many genomic loci
IGVFFI9754AGFB
File Sets Using This Measurement Set as an Input
1 item
Accession
Type
Summary
Aliases
Lab
IGVFDS7943IIWZ
AnalysisSet
CRISPR interference Perturb-seq integrating a guide (sgRNA) library targeting genes in many genomic loci
jesse-engreitz:analysis_set_TeloHAEC_Perturb-seq_2kG
Jesse Engreitz, Stanford
Auxiliary Datasets
1 item
Accession
Type
Summary
Files
Aliases
Lab
IGVFDS7498VOOU
AuxiliarySet
gRNA sequencing for CRISPR interference Perturb-seq integrating a guide (sgRNA) library targeting genes in many genomic loci
IGVFFI9018CEVP
,
IGVFFI0070PCWW
,
IGVFFI4437QXSH
,
IGVFFI6893DOBJ
jesse-engreitz:auxiliary_sets-scRNAseq_2kG_2PMDox2_5
Jesse Engreitz, Stanford