{
"@context": "/terms/",
"@id": "/measurement-sets/IGVFDS8841TWDX/",
"@type": [
"MeasurementSet",
"FileSet",
"Item"
],
"accession": "IGVFDS8841TWDX",
"aliases": [
"jesse-engreitz:measurement_set-scRNAseq_2kG_2PMDox2_5"
],
"assay_term": {
"@id": "/assay-terms/OBI_0003660/",
"status": "released",
"term_name": "in vitro CRISPR screen using single-cell RNA-seq"
},
"audit": {
"INTERNAL_ACTION": [
{
"category": "missing sequence specification",
"detail": "Measurement set [IGVFDS8841TWDX](/measurement-sets/IGVFDS8841TWDX/) has sequence file(s): [IGVFFI3762BSGQ](/sequence-files/IGVFFI3762BSGQ/), [IGVFFI3401QKMA](/sequence-files/IGVFFI3401QKMA/), [IGVFFI6094RPZX](/sequence-files/IGVFFI6094RPZX/), [IGVFFI2897CYDA](/sequence-files/IGVFFI2897CYDA/), [IGVFFI8688YIFV](/sequence-files/IGVFFI8688YIFV/), [IGVFFI8556VPTP](/sequence-files/IGVFFI8556VPTP/), [IGVFFI2524TDDH](/sequence-files/IGVFFI2524TDDH/), [IGVFFI5193KFUL](/sequence-files/IGVFFI5193KFUL/), [IGVFFI9303KSLM](/sequence-files/IGVFFI9303KSLM/), [IGVFFI8820RZOX](/sequence-files/IGVFFI8820RZOX/), [IGVFFI9103ZOPV](/sequence-files/IGVFFI9103ZOPV/), [IGVFFI7582WACA](/sequence-files/IGVFFI7582WACA/), [IGVFFI3915VCBQ](/sequence-files/IGVFFI3915VCBQ/), [IGVFFI6446GHWG](/sequence-files/IGVFFI6446GHWG/), [IGVFFI5649YCIZ](/sequence-files/IGVFFI5649YCIZ/) which do not have any `seqspecs`. Sequence files in a file set are expected to link to a sequence specification file.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_missing_seqspec",
"path": "/measurement-sets/IGVFDS8841TWDX/"
},
{
"category": "missing sequence specification",
"detail": "Auxiliary set [IGVFDS7498VOOU](/auxiliary-sets/IGVFDS7498VOOU/) has sequence file(s): [IGVFFI9018CEVP](/sequence-files/IGVFFI9018CEVP/), [IGVFFI0070PCWW](/sequence-files/IGVFFI0070PCWW/), [IGVFFI4437QXSH](/sequence-files/IGVFFI4437QXSH/), [IGVFFI6893DOBJ](/sequence-files/IGVFFI6893DOBJ/) which do not have any `seqspecs`. Sequence files in a file set are expected to link to a sequence specification file.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_missing_seqspec",
"path": "/auxiliary-sets/IGVFDS7498VOOU/"
},
{
"category": "NTR term ID",
"detail": "Sample term for [NTR_0000753](/sample-terms/NTR_0000753/) has been newly requested. Ontology terms with a newly requested term ID are expected to have it updated following its addition to the appropriate ontology database.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_ntr_term_id",
"path": "/sample-terms/NTR_0000753/"
}
]
},
"auxiliary_sets": [
{
"@id": "/auxiliary-sets/IGVFDS7498VOOU/",
"accession": "IGVFDS7498VOOU",
"aliases": [
"jesse-engreitz:auxiliary_sets-scRNAseq_2kG_2PMDox2_5"
],
"file_set_type": "gRNA sequencing",
"status": "preview"
}
],
"award": {
"@id": "/awards/HG011972/",
"component": "functional characterization",
"contact_pi": {
"@id": "/users/6c75dbfa-635e-4a7a-8ec8-9e51e9c380a4/",
"title": "Jesse Engreitz"
},
"title": "Stanford Center for Connecting DNA Variants to Function and Phenotype"
},
"control_for": [],
"creation_timestamp": "2024-01-18T03:10:06.609472+00:00",
"donors": [
{
"@id": "/human-donors/IGVFDO3459DFTW/",
"accession": "IGVFDO3459DFTW",
"aliases": [
"igvf:donor_of_teloHAEC"
],
"sex": "female",
"status": "released",
"taxa": "Homo sapiens"
}
],
"externally_hosted": false,
"file_set_type": "experimental data",
"files": [
{
"@id": "/sequence-files/IGVFFI3762BSGQ/",
"accession": "IGVFFI3762BSGQ",
"aliases": [
"jesse-engreitz:sequence_file-teloHAEC_2kG_library-NovaSeq2-scRNAseq_2kG_2PMDox2_5_b_GATCAGCA_L001_R1_001.fastq.gz"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-21T00:27:13.011515+00:00",
"file_format": "fastq",
"file_size": 3710939134,
"href": "/sequence-files/IGVFFI3762BSGQ/@@download/IGVFFI3762BSGQ.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/21/0db2a6d2-b7b7-4962-ad48-676fcccd43f5/IGVFFI3762BSGQ.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "preview",
"submitted_file_name": "/oak/stanford/groups/engreitz/Users/kangh/TeloHAEC_Perturb-seq_2kG/210616_Broad_fastq/scRNAseq_2kG_2PMDox2_5_b_GATCAGCA_L001_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI3401QKMA/",
"accession": "IGVFFI3401QKMA",
"aliases": [
"jesse-engreitz:sequence_file-teloHAEC_2kG_library-NovaSeq2-scRNAseq_2kG_2PMDox2_5_b_GATCAGCA_L001_R2_001.fastq.gz"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-21T00:26:25.591676+00:00",
"file_format": "fastq",
"file_size": 5195931578,
"href": "/sequence-files/IGVFFI3401QKMA/@@download/IGVFFI3401QKMA.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/21/d2e30fcc-9d70-4907-a995-4ceb17b9d8fa/IGVFFI3401QKMA.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "preview",
"submitted_file_name": "/oak/stanford/groups/engreitz/Users/kangh/TeloHAEC_Perturb-seq_2kG/210616_Broad_fastq/scRNAseq_2kG_2PMDox2_5_b_GATCAGCA_L001_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI6094RPZX/",
"accession": "IGVFFI6094RPZX",
"aliases": [
"jesse-engreitz:sequence_file-teloHAEC_2kG_library-NovaSeq2-scRNAseq_2kG_2PMDox2_5_c_ACAACAGG_L001_I1_001.fastq.gz"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-21T00:29:18.463734+00:00",
"file_format": "fastq",
"file_size": 1144327977,
"href": "/sequence-files/IGVFFI6094RPZX/@@download/IGVFFI6094RPZX.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/21/1fcc0390-86e8-4e13-aaf9-f37e123f7235/IGVFFI6094RPZX.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "preview",
"submitted_file_name": "/oak/stanford/groups/engreitz/Users/kangh/TeloHAEC_Perturb-seq_2kG/210616_Broad_fastq/scRNAseq_2kG_2PMDox2_5_c_ACAACAGG_L001_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI2897CYDA/",
"accession": "IGVFFI2897CYDA",
"aliases": [
"jesse-engreitz:sequence_file-teloHAEC_2kG_library-NovaSeq2-scRNAseq_2kG_2PMDox2_5_c_ACAACAGG_L001_R1_001.fastq.gz"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-21T00:28:40.464298+00:00",
"file_format": "fastq",
"file_size": 4066341873,
"href": "/sequence-files/IGVFFI2897CYDA/@@download/IGVFFI2897CYDA.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/21/9e7be1ba-92e2-4c08-8143-17c4ee6717e3/IGVFFI2897CYDA.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "preview",
"submitted_file_name": "/oak/stanford/groups/engreitz/Users/kangh/TeloHAEC_Perturb-seq_2kG/210616_Broad_fastq/scRNAseq_2kG_2PMDox2_5_c_ACAACAGG_L001_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI8688YIFV/",
"accession": "IGVFFI8688YIFV",
"aliases": [
"jesse-engreitz:sequence_file-teloHAEC_2kG_library-NovaSeq2-scRNAseq_2kG_2PMDox2_5_c_ACAACAGG_L001_R2_001.fastq.gz"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-21T00:27:49.014747+00:00",
"file_format": "fastq",
"file_size": 5687951295,
"href": "/sequence-files/IGVFFI8688YIFV/@@download/IGVFFI8688YIFV.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/21/1e426735-c610-4772-9ba4-db4b85fee93c/IGVFFI8688YIFV.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "preview",
"submitted_file_name": "/oak/stanford/groups/engreitz/Users/kangh/TeloHAEC_Perturb-seq_2kG/210616_Broad_fastq/scRNAseq_2kG_2PMDox2_5_c_ACAACAGG_L001_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI8556VPTP/",
"accession": "IGVFFI8556VPTP",
"aliases": [
"jesse-engreitz:sequence_file-teloHAEC_2kG_library-NovaSeq2-scRNAseq_2kG_2PMDox2_5_a_CTCGTCAC_L001_I1_001.fastq.gz"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-21T00:26:03.502261+00:00",
"file_format": "fastq",
"file_size": 794893135,
"href": "/sequence-files/IGVFFI8556VPTP/@@download/IGVFFI8556VPTP.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/21/fa0f72d7-36bf-4290-aea6-bea3033fa467/IGVFFI8556VPTP.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "preview",
"submitted_file_name": "/oak/stanford/groups/engreitz/Users/kangh/TeloHAEC_Perturb-seq_2kG/210616_Broad_fastq/scRNAseq_2kG_2PMDox2_5_a_CTCGTCAC_L001_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI2524TDDH/",
"accession": "IGVFFI2524TDDH",
"aliases": [
"jesse-engreitz:sequence_file-teloHAEC_2kG_library-NovaSeq2-scRNAseq_2kG_2PMDox2_5_a_CTCGTCAC_L001_R1_001.fastq.gz"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-21T00:24:55.317422+00:00",
"file_format": "fastq",
"file_size": 2980248807,
"href": "/sequence-files/IGVFFI2524TDDH/@@download/IGVFFI2524TDDH.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/21/e5fa59eb-88d3-409a-ba67-8fa6fb1e3454/IGVFFI2524TDDH.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "preview",
"submitted_file_name": "/oak/stanford/groups/engreitz/Users/kangh/TeloHAEC_Perturb-seq_2kG/210616_Broad_fastq/scRNAseq_2kG_2PMDox2_5_a_CTCGTCAC_L001_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI5193KFUL/",
"accession": "IGVFFI5193KFUL",
"aliases": [
"jesse-engreitz:sequence_file-teloHAEC_2kG_library-NovaSeq2-scRNAseq_2kG_2PMDox2_5_a_CTCGTCAC_L001_R2_001.fastq.gz"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-21T00:25:24.866566+00:00",
"file_format": "fastq",
"file_size": 4159186202,
"href": "/sequence-files/IGVFFI5193KFUL/@@download/IGVFFI5193KFUL.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/21/c658f629-1a4e-48ce-b49a-7aa50edd9278/IGVFFI5193KFUL.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "preview",
"submitted_file_name": "/oak/stanford/groups/engreitz/Users/kangh/TeloHAEC_Perturb-seq_2kG/210616_Broad_fastq/scRNAseq_2kG_2PMDox2_5_a_CTCGTCAC_L001_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI9303KSLM/",
"accession": "IGVFFI9303KSLM",
"aliases": [
"jesse-engreitz:sequence_file-teloHAEC_2kG_library-NovaSeq2-scRNAseq_2kG_2PMDox2_5_d_TGGTGTTT_L001_I1_001.fastq.gz"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-21T00:29:32.442698+00:00",
"file_format": "fastq",
"file_size": 1350684584,
"href": "/sequence-files/IGVFFI9303KSLM/@@download/IGVFFI9303KSLM.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/21/8a55493f-0b07-4ae5-944d-8976c9aaec5b/IGVFFI9303KSLM.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "preview",
"submitted_file_name": "/oak/stanford/groups/engreitz/Users/kangh/TeloHAEC_Perturb-seq_2kG/210616_Broad_fastq/scRNAseq_2kG_2PMDox2_5_d_TGGTGTTT_L001_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI8820RZOX/",
"accession": "IGVFFI8820RZOX",
"aliases": [
"jesse-engreitz:sequence_file-teloHAEC_2kG_library-NovaSeq2-scRNAseq_2kG_2PMDox2_5_d_TGGTGTTT_L001_R1_001.fastq.gz"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-21T00:29:46.865529+00:00",
"file_format": "fastq",
"file_size": 4748546865,
"href": "/sequence-files/IGVFFI8820RZOX/@@download/IGVFFI8820RZOX.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/21/b1da9464-4263-4b32-b232-82e89b059b15/IGVFFI8820RZOX.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "preview",
"submitted_file_name": "/oak/stanford/groups/engreitz/Users/kangh/TeloHAEC_Perturb-seq_2kG/210616_Broad_fastq/scRNAseq_2kG_2PMDox2_5_d_TGGTGTTT_L001_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI9103ZOPV/",
"accession": "IGVFFI9103ZOPV",
"aliases": [
"jesse-engreitz:sequence_file-teloHAEC_2kG_library-NovaSeq2-scRNAseq_2kG_2PMDox2_5_d_TGGTGTTT_L001_R2_001.fastq.gz"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-21T00:30:31.265556+00:00",
"file_format": "fastq",
"file_size": 6651351128,
"href": "/sequence-files/IGVFFI9103ZOPV/@@download/IGVFFI9103ZOPV.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/21/2a2f01a0-ec3b-4320-80e3-ea74ff2907d5/IGVFFI9103ZOPV.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "preview",
"submitted_file_name": "/oak/stanford/groups/engreitz/Users/kangh/TeloHAEC_Perturb-seq_2kG/210616_Broad_fastq/scRNAseq_2kG_2PMDox2_5_d_TGGTGTTT_L001_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI7582WACA/",
"accession": "IGVFFI7582WACA",
"aliases": [
"jesse-engreitz:sequence_file-teloHAEC_2kG_library-NovaSeq1-scRNAseq_2kG_2PMDox2_5_S1_L001_R2_001.fastq.gz"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-21T00:33:21.660188+00:00",
"file_format": "fastq",
"file_size": 12469127503,
"href": "/sequence-files/IGVFFI7582WACA/@@download/IGVFFI7582WACA.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/21/976b4898-52a4-47c3-a228-782b2dab15a6/IGVFFI7582WACA.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "preview",
"submitted_file_name": "/oak/stanford/groups/engreitz/Users/kangh/TeloHAEC_Perturb-seq_2kG/210528_Broad_fastq/scRNAseq_2kG_2PMDox2_5_S1_L001_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI3915VCBQ/",
"accession": "IGVFFI3915VCBQ",
"aliases": [
"jesse-engreitz:sequence_file-teloHAEC_2kG_library-NovaSeq2-scRNAseq_2kG_2PMDox2_5_b_GATCAGCA_L001_I1_001.fastq.gz"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-21T00:26:13.723684+00:00",
"file_format": "fastq",
"file_size": 1023998546,
"href": "/sequence-files/IGVFFI3915VCBQ/@@download/IGVFFI3915VCBQ.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/21/1d2b03cf-6b2e-46dc-bccf-87873b402178/IGVFFI3915VCBQ.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "preview",
"submitted_file_name": "/oak/stanford/groups/engreitz/Users/kangh/TeloHAEC_Perturb-seq_2kG/210616_Broad_fastq/scRNAseq_2kG_2PMDox2_5_b_GATCAGCA_L001_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI6446GHWG/",
"accession": "IGVFFI6446GHWG",
"aliases": [
"jesse-engreitz:sequence_file-teloHAEC_2kG_library-NovaSeq1-scRNAseq_2kG_2PMDox2_5_S1_L001_R1_001.fastq.gz"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-21T00:32:00.179133+00:00",
"file_format": "fastq",
"file_size": 9148060823,
"href": "/sequence-files/IGVFFI6446GHWG/@@download/IGVFFI6446GHWG.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/21/01e53d3d-e361-43a0-a87a-5cdbf4b0ccc5/IGVFFI6446GHWG.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "preview",
"submitted_file_name": "/oak/stanford/groups/engreitz/Users/kangh/TeloHAEC_Perturb-seq_2kG/210528_Broad_fastq/scRNAseq_2kG_2PMDox2_5_S1_L001_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI5649YCIZ/",
"accession": "IGVFFI5649YCIZ",
"aliases": [
"jesse-engreitz:sequence_file-teloHAEC_2kG_library-NovaSeq1-scRNAseq_2kG_2PMDox2_5_S1_L001_I1_001.fastq.gz"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-21T00:31:34.621336+00:00",
"file_format": "fastq",
"file_size": 2652887925,
"href": "/sequence-files/IGVFFI5649YCIZ/@@download/IGVFFI5649YCIZ.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/21/4bd1c58c-ea13-41a4-bcf3-209383a7feb5/IGVFFI5649YCIZ.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "preview",
"submitted_file_name": "/oak/stanford/groups/engreitz/Users/kangh/TeloHAEC_Perturb-seq_2kG/210528_Broad_fastq/scRNAseq_2kG_2PMDox2_5_S1_L001_I1_001.fastq.gz",
"upload_status": "validated"
}
],
"input_for": [
"/analysis-sets/IGVFDS7943IIWZ/"
],
"lab": {
"@id": "/labs/jesse-engreitz/",
"title": "Jesse Engreitz, Stanford"
},
"notes": "The readout 86015c12-b9a6-43ba-9601-5d75aab4d39c was removed from this measurement set.",
"preferred_assay_title": "Perturb-seq",
"protocols": [
"https://www.protocols.io/view/systematic-perturb-seq-to-discover-endothelial-cel-261ged73yv47/v1"
],
"samples": [
{
"@id": "/in-vitro-systems/IGVFSM6643KIQQ/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM6643KIQQ",
"aliases": [
"jesse-engreitz:in_vitro_systems-scRNAseq_2kG_2PMDox2_5"
],
"classifications": [
"cell line"
],
"construct_library_sets": [
{
"@id": "/construct-library-sets/IGVFDS1298TUYG/",
"accession": "IGVFDS1298TUYG",
"file_set_type": "guide library",
"status": "preview",
"summary": "guide (sgRNA) library targeting genes in many genomic loci"
}
],
"modifications": [
{
"@id": "/crispr-modifications/b4bc725a-8eeb-4180-9789-bece3516c0c1/",
"modality": "interference",
"status": "released"
}
],
"sample_terms": [
{
"@id": "/sample-terms/NTR_0000753/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"aliases": [
"igvf:TeloHAEC"
],
"status": "released",
"summary": "TeloHAEC",
"term_name": "TeloHAEC"
}
],
"status": "preview",
"summary": "TeloHAEC cell line, female, Homo sapiens modified with CRISPRi Sp-dCas9-KOX1-KRAB, transfected with a guide library",
"taxa": "Homo sapiens"
}
],
"schema_version": "23",
"status": "preview",
"submitted_by": {
"@id": "/users/05fa0dc9-0e33-427c-9d1f-82393edc4a03/",
"title": "Helen Kang"
},
"submitted_files_timestamp": "2023-12-21T00:24:55.317422+00:00",
"summary": "CRISPR interference Perturb-seq integrating a guide (sgRNA) library targeting genes in many genomic loci",
"uuid": "e64f51eb-1522-4118-ad43-c0d10d3070a9"
}