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MeasurementSet
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IGVFDS8707VRYD
IGVFDS8707VRYD
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File Set Type
experimental data
Summary
single-nucleus RNA sequencing assay (10x multiome)
Assay Term
single-nucleus RNA sequencing assay
Sample Summaries
multiplexed sample: Homo sapiens (male, 70 years) substantia nigra tissue associated with Parkinson's disease, mild cognitive impairment; Homo sapiens (male, 85 years) middle temporal gyrus tissue associated with Parkinson's disease, cerebral amyloid angiopathy; ... and 10 more samples
Protocols
https://www.protocols.io/view/chromium-next-gem-single-cell-multiome-atac-gene-e-d5k784zn
Aliases
igvf:corces_measurementSet_X044_G2_RNA
Attribution
Ryan Corces, Gladstone Institute UCSF
(
HG012076
—
Ansuman Satpathy
)
Sequencing Results (Illumina)
16 items
1
2
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Read Names
Associated seqspec Files
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI0248CLIV
fastq
reads
I1
1
Illumina NovaSeq X
222YMLLT3
7
333 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI0773QGYK
fastq
reads
R2
1
Read 2
Illumina NovaSeq X
222YMLLT3
5
2.6 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI0981BHXC
fastq
reads
R1
1
Read 1
Illumina NovaSeq X
222YMLLT3
8
1.1 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI1538YGNJ
fastq
reads
I2
1
Illumina NovaSeq X
222YMLLT3
7
383 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI3139OZLF
fastq
reads
I1
1
Illumina NovaSeq X
222YMLLT3
6
347 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI5535LKNG
fastq
reads
R2
1
Read 2
Illumina NovaSeq X
222YMLLT3
6
2.5 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI6654XIQU
fastq
reads
R2
1
Read 2
Illumina NovaSeq X
222YMLLT3
7
2.4 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI6767NGDR
fastq
reads
R1
1
Read 1
Illumina NovaSeq X
222YMLLT3
6
1.2 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI7376LFUP
fastq
reads
I1
1
Illumina NovaSeq X
222YMLLT3
5
350 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI7745DWJL
fastq
reads
I2
1
Illumina NovaSeq X
222YMLLT3
6
398 MB
Ryan Corces, Gladstone Institute UCSF
validated
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Associated Construct Library Sets
Summary
IGVFSM6240XBPL
MultiplexedSample
cerebellar cortex
,
middle temporal gyrus
,
posterior cingulate gyrus
,
putamen
,
substantia nigra
cerebral amyloid angiopathy
,
mild cognitive impairment
,
Parkinson's disease
multiplexed sample: Homo sapiens (male, 70 years) substantia nigra tissue associated with Parkinson's disease, mild cognitive impairment; Homo sapiens (male, 85 years) middle temporal gyrus tissue associated with Parkinson's disease, cerebral amyloid angiopathy; ... and 10 more samples
Donors
12 items
1
2
Accession
Aliases
Sex
Taxa
IGVFDO0411QFOF
igvf:corces_donor_BANN1750
male
Homo sapiens
IGVFDO1797DNPW
igvf:corces_donor_BANN1827
male
Homo sapiens
IGVFDO2045AFUW
igvf:corces_donor_BANN1404
male
Homo sapiens
IGVFDO2207KFPL
igvf:corces_donor_BANN0413
male
Homo sapiens
IGVFDO3795BUZW
igvf:corces_donor_BANN1311
male
Homo sapiens
IGVFDO5205IAEO
igvf:corces_donor_BANN1632
male
Homo sapiens
IGVFDO6837RJUQ
igvf:corces_donor_BANN1201
male
Homo sapiens
IGVFDO7606UOXI
igvf:corces_donor_BANN1570
male
Homo sapiens
IGVFDO7754VJKM
igvf:corces_donor_BANN0341
male
Homo sapiens
IGVFDO8817BLIU
igvf:corces_donor_BANN1039
male
Homo sapiens
Related Multiome Datasets
1 item
Accession
Type
Summary
Aliases
Lab
IGVFDS8318EODY
MeasurementSet
single-nucleus ATAC-seq (10x multiome)
igvf:corces_measurementSet_X044_G2_ATAC
Ryan Corces, Gladstone Institute UCSF