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MeasurementSet
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IGVFDS8403DDLC
IGVFDS8403DDLC
released
Json view
File Set Type
experimental data
Summary
mixed TAP-seq integrating a guide (sgRNA) library targeting accessible genome regions in 29 genomic loci
Assay Term
in vitro CRISPR screen using single-cell RNA-seq
Sample Summaries
HCT116 cell line, male, Homo sapiens treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours, modified with a guide library
Construct Library Sets
IGVFDS9869EMNE
Guide (sgRNA) library targeting accessible genome regions in 29 genomic loci
Protocols
https://www.protocols.io/view/crispri-of-regulatory-elements-upon-degron-operati-5jyl82d59l2w/v1
Aliases
jesse-engreitz:measurement_CRUDO_TAPseq-Auxin6hrs-Rep2
Sequencing Results (Illumina)
12 items
1
2
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Associated seqspec Files
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI1090FYAA
fastq
reads
I1
1
IGVFFI7894CKVE
Illumina NextSeq 550
2
123 MB
Jesse Engreitz, Stanford
validated
IGVFFI2837YQLJ
fastq
reads
R1
1
IGVFFI4106VMGU
Illumina NextSeq 550
1
406 MB
Jesse Engreitz, Stanford
validated
IGVFFI3272DDWD
fastq
reads
I1
1
IGVFFI7942WNXM
Illumina NextSeq 550
3
124 MB
Jesse Engreitz, Stanford
validated
IGVFFI3461WBDK
fastq
reads
R1
1
IGVFFI2982KSVM
Illumina NextSeq 550
4
411 MB
Jesse Engreitz, Stanford
validated
IGVFFI4839QVTC
fastq
reads
R2
1
IGVFFI2982KSVM
Illumina NextSeq 550
4
923 MB
Jesse Engreitz, Stanford
validated
IGVFFI5238KZBQ
fastq
reads
R2
1
IGVFFI7894CKVE
Illumina NextSeq 550
2
912 MB
Jesse Engreitz, Stanford
validated
IGVFFI5460ASSY
fastq
reads
R2
1
IGVFFI7942WNXM
Illumina NextSeq 550
3
930 MB
Jesse Engreitz, Stanford
validated
IGVFFI6606YZTP
fastq
reads
R1
1
IGVFFI7894CKVE
Illumina NextSeq 550
2
406 MB
Jesse Engreitz, Stanford
validated
IGVFFI8111MPTE
fastq
reads
I1
1
IGVFFI4106VMGU
Illumina NextSeq 550
1
123 MB
Jesse Engreitz, Stanford
validated
IGVFFI9043ACMD
fastq
reads
I1
1
IGVFFI2982KSVM
Illumina NextSeq 550
4
124 MB
Jesse Engreitz, Stanford
validated
Samples
1 item
Accession
Type
Sample Terms
Summary
IGVFSM8511JOMW
InVitroSystem
HCT116
HCT116 cell line, male, Homo sapiens treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours, modified with a guide library
Donors
1 item
Accession
Aliases
Sex
Taxa
IGVFDO0384OZRW
igvf:donor_of_HCT116
male
Homo sapiens
Auxiliary Datasets
1 item
Accession
Type
Summary
Files
Aliases
Lab
IGVFDS4057PFBU
AuxiliarySet
gRNA sequencing for mixed TAP-seq integrating a guide (sgRNA) library targeting accessible genome regions in 29 genomic loci
IGVFFI3454BUML
,
IGVFFI3968OUXL
,
IGVFFI4244AIHE
,
IGVFFI6509IKAK
,
IGVFFI7745NNEZ
,
IGVFFI4261MKPE
,
IGVFFI2009UHTY
,
IGVFFI7212KPPW
,
IGVFFI2734JVZP
,
IGVFFI3142LWDR
,
IGVFFI6662ZMLA
,
IGVFFI8620YJXA
jesse-engreitz:auxiliary_CRUDO_TAPseq-Auxin6hrs-Rep2
Jesse Engreitz, Stanford
Documents
1 item
Page
Description
Type
Download
Preview
overview of experimental design
experimental protocol
CRUDO_overview.pdf
Download CRUDO_overview.pdf
Download CRUDO_overview.pdf
Attribution
Award
HG011972
Principal Investigator(s)
Anshul Kundaje
,
Jesse Engreitz
,
Marlene Rabinovitch
,
Lars Steinmetz
,
Michael Bassik
,
Thomas Quertermous
,
Will Greenleaf
Contact P.I.
Jesse Engreitz
Lab
Jesse Engreitz, Stanford