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IGVFDS8403DDLC

released
File Set Type
experimental data
Summary
mixed TAP-seq integrating a guide (sgRNA) library targeting accessible genome regions in 29 genomic loci
Assay Term
in vitro CRISPR screen using single-cell RNA-seq
Sample Summaries
  • HCT116 cell line, male, Homo sapiens treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours, modified with AID system targeting RAD21, CRISPRi Sp-dCas9-KOX1-KRAB, transfected with a guide library
Construct Library Sets
  • IGVFDS9869EMNE Guide (sgRNA) library targeting accessible genome regions in 29 genomic loci
Protocols
Aliases
jesse-engreitz:measurement_CRUDO_TAPseq-Auxin6hrs-Rep2

Sequencing Results (Illumina)

12 items
fastq
reads
I1
1
2
123 MB
Jesse Engreitz, Stanford
validated
fastq
reads
R1
1
1
406 MB
Jesse Engreitz, Stanford
validated
fastq
reads
I1
1
3
124 MB
Jesse Engreitz, Stanford
validated
fastq
reads
R1
1
4
411 MB
Jesse Engreitz, Stanford
validated
fastq
reads
R2
1
4
923 MB
Jesse Engreitz, Stanford
validated
fastq
reads
R2
1
2
912 MB
Jesse Engreitz, Stanford
validated
fastq
reads
R2
1
3
930 MB
Jesse Engreitz, Stanford
validated
fastq
reads
R1
1
2
406 MB
Jesse Engreitz, Stanford
validated
fastq
reads
I1
1
1
123 MB
Jesse Engreitz, Stanford
validated
fastq
reads
I1
1
4
124 MB
Jesse Engreitz, Stanford
validated

Attribution

Award
HG011972
Principal Investigator(s)
Contact P.I.
Jesse Engreitz
Lab
Jesse Engreitz, Stanford