{
"@context": "/terms/",
"@id": "/measurement-sets/IGVFDS8403DDLC/",
"@type": [
"MeasurementSet",
"FileSet",
"Item"
],
"accession": "IGVFDS8403DDLC",
"aliases": [
"jesse-engreitz:measurement_CRUDO_TAPseq-Auxin6hrs-Rep2"
],
"assay_term": {
"@id": "/assay-terms/OBI_0003660/",
"term_name": "in vitro CRISPR screen using single-cell RNA-seq"
},
"audit": {
"INTERNAL_ACTION": [
{
"category": "mismatched status",
"detail": "Released human donor [IGVFDO0384OZRW](/human-donors/IGVFDO0384OZRW/) has in progress subobject publication [155f24ce-5c2c-4400-8651-da9447eaca25](/publications/155f24ce-5c2c-4400-8651-da9447eaca25/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO0384OZRW/"
},
{
"category": "mismatched status",
"detail": "Released in vitro system [IGVFSM8511JOMW](/in-vitro-systems/IGVFSM8511JOMW/) has in progress subobject degron modification [95081d1b-08b4-49ed-b324-e53fc43d8456](/degron-modifications/95081d1b-08b4-49ed-b324-e53fc43d8456/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/in-vitro-systems/IGVFSM8511JOMW/"
},
{
"category": "mismatched status",
"detail": "Released in vitro system [IGVFSM8511JOMW](/in-vitro-systems/IGVFSM8511JOMW/) has in progress subobject treatment [d35868d1-c45b-49ae-8ff3-a9c0c22551c2](/treatments/d35868d1-c45b-49ae-8ff3-a9c0c22551c2/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/in-vitro-systems/IGVFSM8511JOMW/"
}
],
"WARNING": [
{
"category": "missing sequencing kit",
"detail": "Auxiliary set [IGVFDS4057PFBU](/auxiliary-sets/IGVFDS4057PFBU/) has sequence file(s) [IGVFFI3454BUML](/sequence-files/IGVFFI3454BUML/), [IGVFFI3968OUXL](/sequence-files/IGVFFI3968OUXL/), [IGVFFI4244AIHE](/sequence-files/IGVFFI4244AIHE/), [IGVFFI6509IKAK](/sequence-files/IGVFFI6509IKAK/), [IGVFFI7745NNEZ](/sequence-files/IGVFFI7745NNEZ/), [IGVFFI4261MKPE](/sequence-files/IGVFFI4261MKPE/), [IGVFFI2009UHTY](/sequence-files/IGVFFI2009UHTY/), [IGVFFI7212KPPW](/sequence-files/IGVFFI7212KPPW/), [IGVFFI2734JVZP](/sequence-files/IGVFFI2734JVZP/), [IGVFFI3142LWDR](/sequence-files/IGVFFI3142LWDR/), [IGVFFI6662ZMLA](/sequence-files/IGVFFI6662ZMLA/), [IGVFFI8620YJXA](/sequence-files/IGVFFI8620YJXA/) which lack specification of a `sequencing_kit`. Sequence files should specify a sequencing kit.",
"level": 40,
"level_name": "WARNING",
"name": "audit_inconsistent_sequencing_kit",
"path": "/auxiliary-sets/IGVFDS4057PFBU/"
},
{
"category": "missing sequencing kit",
"detail": "Measurement set [IGVFDS8403DDLC](/measurement-sets/IGVFDS8403DDLC/) has sequence file(s) [IGVFFI9534FGRQ](/sequence-files/IGVFFI9534FGRQ/), [IGVFFI5460ASSY](/sequence-files/IGVFFI5460ASSY/), [IGVFFI4839QVTC](/sequence-files/IGVFFI4839QVTC/), [IGVFFI8111MPTE](/sequence-files/IGVFFI8111MPTE/), [IGVFFI2837YQLJ](/sequence-files/IGVFFI2837YQLJ/), [IGVFFI6606YZTP](/sequence-files/IGVFFI6606YZTP/), [IGVFFI5238KZBQ](/sequence-files/IGVFFI5238KZBQ/), [IGVFFI3272DDWD](/sequence-files/IGVFFI3272DDWD/), [IGVFFI1090FYAA](/sequence-files/IGVFFI1090FYAA/), [IGVFFI9275BZMG](/sequence-files/IGVFFI9275BZMG/), [IGVFFI9043ACMD](/sequence-files/IGVFFI9043ACMD/), [IGVFFI3461WBDK](/sequence-files/IGVFFI3461WBDK/) which lack specification of a `sequencing_kit`. Sequence files should specify a sequencing kit.",
"level": 40,
"level_name": "WARNING",
"name": "audit_inconsistent_sequencing_kit",
"path": "/measurement-sets/IGVFDS8403DDLC/"
}
]
},
"auxiliary_sets": [
{
"@id": "/auxiliary-sets/IGVFDS4057PFBU/",
"accession": "IGVFDS4057PFBU",
"aliases": [
"jesse-engreitz:auxiliary_CRUDO_TAPseq-Auxin6hrs-Rep2"
],
"file_set_type": "gRNA sequencing"
}
],
"award": {
"@id": "/awards/HG011972/",
"component": "functional characterization",
"contact_pi": {
"@id": "/users/6c75dbfa-635e-4a7a-8ec8-9e51e9c380a4/",
"title": "Jesse Engreitz"
},
"title": "Stanford Center for Connecting DNA Variants to Function and Phenotype"
},
"control_for": [],
"creation_timestamp": "2024-05-23T22:48:14.733164+00:00",
"documents": [
"/documents/74d53b9c-ab1d-42e3-b679-d3a00ae3d842/"
],
"donors": [
{
"@id": "/human-donors/IGVFDO0384OZRW/",
"accession": "IGVFDO0384OZRW",
"aliases": [
"igvf:donor_of_HCT116"
],
"sex": "male",
"status": "released",
"taxa": "Homo sapiens"
}
],
"file_set_type": "experimental data",
"files": [
{
"@id": "/sequence-files/IGVFFI9534FGRQ/",
"accession": "IGVFFI9534FGRQ",
"aliases": [
"jesse-engreitz:measurement_files_CRUDO_TAPseq-Auxin6hrs-Rep2_S1_R2"
],
"content_type": "reads",
"creation_timestamp": "2024-06-03T19:12:49.835321+00:00",
"file_format": "fastq",
"file_size": 914945506,
"href": "/sequence-files/IGVFFI9534FGRQ/@@download/IGVFFI9534FGRQ.fastq.gz",
"s3_uri": "s3://igvf-files/2024/06/03/f7516ce3-2932-4e0b-bd27-d3f8d61bb134/IGVFFI9534FGRQ.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"term_name": "Illumina NextSeq 550"
},
"submitted_file_name": "/oak/stanford/groups/engreitz/Projects/Cohesin/221224_Cohesin_TAPseq_v2/221219_P044_cohesin_tapseq_v2/outs/fastq_path/L380_S3_L001_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI5460ASSY/",
"accession": "IGVFFI5460ASSY",
"aliases": [
"jesse-engreitz:measurement_files_CRUDO_TAPseq-Auxin6hrs-Rep2_S3_R2"
],
"content_type": "reads",
"creation_timestamp": "2024-06-03T19:13:25.196104+00:00",
"file_format": "fastq",
"file_size": 929659745,
"href": "/sequence-files/IGVFFI5460ASSY/@@download/IGVFFI5460ASSY.fastq.gz",
"s3_uri": "s3://igvf-files/2024/06/03/8ea2d99f-47b4-45ec-88a6-6868ffc903b6/IGVFFI5460ASSY.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"term_name": "Illumina NextSeq 550"
},
"submitted_file_name": "/oak/stanford/groups/engreitz/Projects/Cohesin/221224_Cohesin_TAPseq_v2/221219_P044_cohesin_tapseq_v2/outs/fastq_path/L380_S3_L003_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI4839QVTC/",
"accession": "IGVFFI4839QVTC",
"aliases": [
"jesse-engreitz:measurement_files_CRUDO_TAPseq-Auxin6hrs-Rep2_S4_R2"
],
"content_type": "reads",
"creation_timestamp": "2024-06-03T19:13:40.952413+00:00",
"file_format": "fastq",
"file_size": 922986181,
"href": "/sequence-files/IGVFFI4839QVTC/@@download/IGVFFI4839QVTC.fastq.gz",
"s3_uri": "s3://igvf-files/2024/06/03/2e757c8f-cd1f-4120-a0c8-f044b9aef612/IGVFFI4839QVTC.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"term_name": "Illumina NextSeq 550"
},
"submitted_file_name": "/oak/stanford/groups/engreitz/Projects/Cohesin/221224_Cohesin_TAPseq_v2/221219_P044_cohesin_tapseq_v2/outs/fastq_path/L380_S3_L004_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI8111MPTE/",
"accession": "IGVFFI8111MPTE",
"aliases": [
"jesse-engreitz:measurement_files_CRUDO_TAPseq-Auxin6hrs-Rep2_S1_I1"
],
"content_type": "reads",
"creation_timestamp": "2024-06-03T19:12:57.668210+00:00",
"file_format": "fastq",
"file_size": 122953079,
"href": "/sequence-files/IGVFFI8111MPTE/@@download/IGVFFI8111MPTE.fastq.gz",
"s3_uri": "s3://igvf-files/2024/06/03/ff09b0b6-ebd0-43ca-bfad-711eb207993c/IGVFFI8111MPTE.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"term_name": "Illumina NextSeq 550"
},
"submitted_file_name": "/oak/stanford/groups/engreitz/Projects/Cohesin/221224_Cohesin_TAPseq_v2/221219_P044_cohesin_tapseq_v2/outs/fastq_path/L380_S3_L001_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI2837YQLJ/",
"accession": "IGVFFI2837YQLJ",
"aliases": [
"jesse-engreitz:measurement_files_CRUDO_TAPseq-Auxin6hrs-Rep2_S1_R1"
],
"content_type": "reads",
"creation_timestamp": "2024-06-03T19:12:44.938830+00:00",
"file_format": "fastq",
"file_size": 405912982,
"href": "/sequence-files/IGVFFI2837YQLJ/@@download/IGVFFI2837YQLJ.fastq.gz",
"s3_uri": "s3://igvf-files/2024/06/03/53809287-8e6e-4cc5-a781-375770de3604/IGVFFI2837YQLJ.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"term_name": "Illumina NextSeq 550"
},
"submitted_file_name": "/oak/stanford/groups/engreitz/Projects/Cohesin/221224_Cohesin_TAPseq_v2/221219_P044_cohesin_tapseq_v2/outs/fastq_path/L380_S3_L001_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI6606YZTP/",
"accession": "IGVFFI6606YZTP",
"aliases": [
"jesse-engreitz:measurement_files_CRUDO_TAPseq-Auxin6hrs-Rep2_S2_R1"
],
"content_type": "reads",
"creation_timestamp": "2024-06-03T19:13:02.117653+00:00",
"file_format": "fastq",
"file_size": 405796917,
"href": "/sequence-files/IGVFFI6606YZTP/@@download/IGVFFI6606YZTP.fastq.gz",
"s3_uri": "s3://igvf-files/2024/06/03/ad925955-710e-41a6-8ca3-104fc683719a/IGVFFI6606YZTP.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"term_name": "Illumina NextSeq 550"
},
"submitted_file_name": "/oak/stanford/groups/engreitz/Projects/Cohesin/221224_Cohesin_TAPseq_v2/221219_P044_cohesin_tapseq_v2/outs/fastq_path/L380_S3_L002_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI5238KZBQ/",
"accession": "IGVFFI5238KZBQ",
"aliases": [
"jesse-engreitz:measurement_files_CRUDO_TAPseq-Auxin6hrs-Rep2_S2_R2"
],
"content_type": "reads",
"creation_timestamp": "2024-06-03T19:13:06.484549+00:00",
"file_format": "fastq",
"file_size": 911731509,
"href": "/sequence-files/IGVFFI5238KZBQ/@@download/IGVFFI5238KZBQ.fastq.gz",
"s3_uri": "s3://igvf-files/2024/06/03/d3dbc162-f4b4-420d-ac58-452a42bd0e0d/IGVFFI5238KZBQ.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"term_name": "Illumina NextSeq 550"
},
"submitted_file_name": "/oak/stanford/groups/engreitz/Projects/Cohesin/221224_Cohesin_TAPseq_v2/221219_P044_cohesin_tapseq_v2/outs/fastq_path/L380_S3_L002_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI3272DDWD/",
"accession": "IGVFFI3272DDWD",
"aliases": [
"jesse-engreitz:measurement_files_CRUDO_TAPseq-Auxin6hrs-Rep2_S3_I1"
],
"content_type": "reads",
"creation_timestamp": "2024-06-03T19:13:32.333818+00:00",
"file_format": "fastq",
"file_size": 123688980,
"href": "/sequence-files/IGVFFI3272DDWD/@@download/IGVFFI3272DDWD.fastq.gz",
"s3_uri": "s3://igvf-files/2024/06/03/74fd8e72-d9b9-45ae-8caa-0094449d4d42/IGVFFI3272DDWD.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"term_name": "Illumina NextSeq 550"
},
"submitted_file_name": "/oak/stanford/groups/engreitz/Projects/Cohesin/221224_Cohesin_TAPseq_v2/221219_P044_cohesin_tapseq_v2/outs/fastq_path/L380_S3_L003_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI1090FYAA/",
"accession": "IGVFFI1090FYAA",
"aliases": [
"jesse-engreitz:measurement_files_CRUDO_TAPseq-Auxin6hrs-Rep2_S2_I1"
],
"content_type": "reads",
"creation_timestamp": "2024-06-03T19:13:13.495201+00:00",
"file_format": "fastq",
"file_size": 123481462,
"href": "/sequence-files/IGVFFI1090FYAA/@@download/IGVFFI1090FYAA.fastq.gz",
"s3_uri": "s3://igvf-files/2024/06/03/d37c8b43-e432-493e-8c70-c89255f1d689/IGVFFI1090FYAA.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"term_name": "Illumina NextSeq 550"
},
"submitted_file_name": "/oak/stanford/groups/engreitz/Projects/Cohesin/221224_Cohesin_TAPseq_v2/221219_P044_cohesin_tapseq_v2/outs/fastq_path/L380_S3_L002_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI9275BZMG/",
"accession": "IGVFFI9275BZMG",
"aliases": [
"jesse-engreitz:measurement_files_CRUDO_TAPseq-Auxin6hrs-Rep2_S3_R1"
],
"content_type": "reads",
"creation_timestamp": "2024-06-03T19:13:18.105567+00:00",
"file_format": "fastq",
"file_size": 412254378,
"href": "/sequence-files/IGVFFI9275BZMG/@@download/IGVFFI9275BZMG.fastq.gz",
"s3_uri": "s3://igvf-files/2024/06/03/709e948c-7a93-4e6c-852e-7f82a07c9c04/IGVFFI9275BZMG.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"term_name": "Illumina NextSeq 550"
},
"submitted_file_name": "/oak/stanford/groups/engreitz/Projects/Cohesin/221224_Cohesin_TAPseq_v2/221219_P044_cohesin_tapseq_v2/outs/fastq_path/L380_S3_L003_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI9043ACMD/",
"accession": "IGVFFI9043ACMD",
"aliases": [
"jesse-engreitz:measurement_files_CRUDO_TAPseq-Auxin6hrs-Rep2_S4_I1"
],
"content_type": "reads",
"creation_timestamp": "2024-06-03T19:13:47.869145+00:00",
"file_format": "fastq",
"file_size": 124447491,
"href": "/sequence-files/IGVFFI9043ACMD/@@download/IGVFFI9043ACMD.fastq.gz",
"s3_uri": "s3://igvf-files/2024/06/03/e5491dc9-864b-4e01-945f-a933aff522c4/IGVFFI9043ACMD.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"term_name": "Illumina NextSeq 550"
},
"submitted_file_name": "/oak/stanford/groups/engreitz/Projects/Cohesin/221224_Cohesin_TAPseq_v2/221219_P044_cohesin_tapseq_v2/outs/fastq_path/L380_S3_L004_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI3461WBDK/",
"accession": "IGVFFI3461WBDK",
"aliases": [
"jesse-engreitz:measurement_files_CRUDO_TAPseq-Auxin6hrs-Rep2_S4_R1"
],
"content_type": "reads",
"creation_timestamp": "2024-06-03T19:13:35.912579+00:00",
"file_format": "fastq",
"file_size": 410811538,
"href": "/sequence-files/IGVFFI3461WBDK/@@download/IGVFFI3461WBDK.fastq.gz",
"s3_uri": "s3://igvf-files/2024/06/03/a76571a3-9359-4ab7-a899-5b260537d2e2/IGVFFI3461WBDK.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"term_name": "Illumina NextSeq 550"
},
"submitted_file_name": "/oak/stanford/groups/engreitz/Projects/Cohesin/221224_Cohesin_TAPseq_v2/221219_P044_cohesin_tapseq_v2/outs/fastq_path/L380_S3_L004_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/configuration-files/IGVFFI4106VMGU/",
"accession": "IGVFFI4106VMGU",
"aliases": [
"jesse-engreitz:seqspecfile_rna_CRUDO_TAPseq_Auxin6hrs-Rep2-S1"
],
"content_type": "seqspec",
"creation_timestamp": "2024-06-20T17:16:37.348671+00:00",
"file_format": "yaml",
"file_size": 1046,
"href": "/configuration-files/IGVFFI4106VMGU/@@download/IGVFFI4106VMGU.yaml.gz",
"s3_uri": "s3://igvf-files/2024/06/20/3e9899be-79fd-4680-abb6-0bea8540b81a/IGVFFI4106VMGU.yaml.gz",
"submitted_file_name": "/oak/stanford/groups/engreitz/Projects/Cohesin/240410_IGVF_upload/seqspec/tapseq_seqspec.out.Auxin6hrs-Rep2-S1.rna.yaml.gz",
"upload_status": "validated"
},
{
"@id": "/configuration-files/IGVFFI7942WNXM/",
"accession": "IGVFFI7942WNXM",
"aliases": [
"jesse-engreitz:seqspecfile_rna_CRUDO_TAPseq_Auxin6hrs-Rep2-S3"
],
"content_type": "seqspec",
"creation_timestamp": "2024-06-20T17:16:47.210684+00:00",
"file_format": "yaml",
"file_size": 1046,
"href": "/configuration-files/IGVFFI7942WNXM/@@download/IGVFFI7942WNXM.yaml.gz",
"s3_uri": "s3://igvf-files/2024/06/20/5fe73279-9500-48a2-8220-1eba108c2acc/IGVFFI7942WNXM.yaml.gz",
"submitted_file_name": "/oak/stanford/groups/engreitz/Projects/Cohesin/240410_IGVF_upload/seqspec/tapseq_seqspec.out.Auxin6hrs-Rep2-S3.rna.yaml.gz",
"upload_status": "validated"
},
{
"@id": "/configuration-files/IGVFFI7894CKVE/",
"accession": "IGVFFI7894CKVE",
"aliases": [
"jesse-engreitz:seqspecfile_rna_CRUDO_TAPseq_Auxin6hrs-Rep2-S2"
],
"content_type": "seqspec",
"creation_timestamp": "2024-06-20T17:16:42.230528+00:00",
"file_format": "yaml",
"file_size": 1046,
"href": "/configuration-files/IGVFFI7894CKVE/@@download/IGVFFI7894CKVE.yaml.gz",
"s3_uri": "s3://igvf-files/2024/06/20/9a0f4817-9280-42f1-9808-788d9ef07d40/IGVFFI7894CKVE.yaml.gz",
"submitted_file_name": "/oak/stanford/groups/engreitz/Projects/Cohesin/240410_IGVF_upload/seqspec/tapseq_seqspec.out.Auxin6hrs-Rep2-S2.rna.yaml.gz",
"upload_status": "validated"
},
{
"@id": "/configuration-files/IGVFFI2982KSVM/",
"accession": "IGVFFI2982KSVM",
"aliases": [
"jesse-engreitz:seqspecfile_rna_CRUDO_TAPseq_Auxin6hrs-Rep2-S4"
],
"content_type": "seqspec",
"creation_timestamp": "2024-06-20T17:16:52.002958+00:00",
"file_format": "yaml",
"file_size": 1045,
"href": "/configuration-files/IGVFFI2982KSVM/@@download/IGVFFI2982KSVM.yaml.gz",
"s3_uri": "s3://igvf-files/2024/06/20/75badb6c-c57f-4f0f-af2e-1ba0e7ca9c5e/IGVFFI2982KSVM.yaml.gz",
"submitted_file_name": "/oak/stanford/groups/engreitz/Projects/Cohesin/240410_IGVF_upload/seqspec/tapseq_seqspec.out.Auxin6hrs-Rep2-S4.rna.yaml.gz",
"upload_status": "validated"
}
],
"input_file_set_for": [
"/analysis-sets/IGVFDS5308EMCG/"
],
"lab": {
"@id": "/labs/jesse-engreitz/",
"title": "Jesse Engreitz, Stanford"
},
"notes": "The readout 86015c12-b9a6-43ba-9601-5d75aab4d39c was removed from this measurement set.",
"preferred_assay_title": "TAP-seq",
"protocols": [
"https://www.protocols.io/view/crispri-of-regulatory-elements-upon-degron-operati-5jyl82d59l2w/v1"
],
"release_timestamp": "2024-07-10T19:53:43.373893+00:00",
"samples": [
{
"@id": "/in-vitro-systems/IGVFSM8511JOMW/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM8511JOMW",
"aliases": [
"jesse-engreitz:in-vitro-system_CRUDO_TAPseq-Auxin6hrs-Rep2"
],
"classifications": [
"cell line"
],
"construct_library_sets": [
{
"@id": "/construct-library-sets/IGVFDS9869EMNE/",
"accession": "IGVFDS9869EMNE",
"file_set_type": "guide library",
"summary": "Guide (sgRNA) library targeting accessible genome regions in 29 genomic loci"
}
],
"modifications": [
{
"@id": "/degron-modifications/95081d1b-08b4-49ed-b324-e53fc43d8456/",
"modality": "degradation"
},
{
"@id": "/crispr-modifications/8543fa06-1720-4e7d-8e8f-7e24c1b1cf79/",
"modality": "interference"
}
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0002824/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"aliases": [
"igvf:HCT116"
],
"status": "released",
"summary": "HCT116",
"term_name": "HCT116"
}
],
"status": "released",
"summary": "HCT116 cell line, male, Homo sapiens treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours, modified with a guide library",
"taxa": "Homo sapiens",
"treatments": [
{
"@id": "/treatments/d35868d1-c45b-49ae-8ff3-a9c0c22551c2/",
"purpose": "activation",
"summary": "Treatment of 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours",
"treatment_type": "chemical"
}
]
}
],
"schema_version": "21",
"status": "released",
"submitted_by": {
"@id": "/users/3bd6f74c-8cf3-4c35-a94d-0c7c11654815/",
"title": "Chongyon Park"
},
"submitted_files_timestamp": "2024-06-03T19:12:44.938830+00:00",
"summary": "mixed TAP-seq integrating a guide (sgRNA) library targeting accessible genome regions in 29 genomic loci",
"uuid": "cb574488-7b6d-4b8e-ba92-0e930e94e429"
}