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INDEXED
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MeasurementSet
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IGVFDS7889GEQS
IGVFDS7889GEQS
released
Json view
File Set Type
experimental data
Summary
snMCT-seq
Assay Term
single-nucleus methylcytosine and transcriptome sequencing assay
Sample Summaries
fibroblast reprogrammed cell specimen induced to induced pluripotent stem cell for 3 days, Homo sapiens
Protocols
https://www.protocols.io/view/snmcat-v2-x54v9jby1g3e/v2
Aliases
chongyuan-luo:pgp_snmct_C39_day3
Sequencing Results (Illumina)
8 items
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Read Names
Associated seqspec Files
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI0915BQHY
fastq
reads
R1
1
Illumina NovaSeq X
4
6.7 GB
Chongyuan Luo, UCLA
validated
IGVFFI1055BFIR
fastq
reads
R1
1
Illumina NovaSeq X
3
6.7 GB
Chongyuan Luo, UCLA
validated
IGVFFI3020NEOA
fastq
reads
R1
1
Illumina NovaSeq X
2
6.5 GB
Chongyuan Luo, UCLA
validated
IGVFFI3403WBPL
fastq
reads
R1
1
Read 1
Illumina NovaSeq X
1
6.7 GB
Chongyuan Luo, UCLA
validated
IGVFFI5029HGQI
fastq
reads
R2
2
Read 2
Illumina NovaSeq X
4
6.6 GB
Chongyuan Luo, UCLA
validated
IGVFFI5628TGDN
fastq
reads
R2
2
Illumina NovaSeq X
2
6.5 GB
Chongyuan Luo, UCLA
validated
IGVFFI7093FHGJ
fastq
reads
R2
2
Read 2
Illumina NovaSeq X
3
6.6 GB
Chongyuan Luo, UCLA
validated
IGVFFI9776GAAH
fastq
reads
R2
2
Illumina NovaSeq X
1
6.6 GB
Chongyuan Luo, UCLA
validated
Samples
1 item
Accession
Type
Sample Terms
Associated Construct Library Sets
Summary
IGVFSM6688THZN
InVitroSystem
fibroblast
fibroblast reprogrammed cell specimen induced to induced pluripotent stem cell for 3 days, Homo sapiens
Donors
1 item
Accession
Aliases
Sex
Taxa
IGVFDO4068JJIT
chongyuan-luo:C39
unspecified
Homo sapiens
Attribution
Award
HG012079
Principal Investigator(s)
Kathrin Plath
,
Noah Zaitlen
,
Chongyuan Luo
,
Jason Ernst
,
Roy Wollman
Contact P.I.
Chongyuan Luo
Lab
Chongyuan Luo, UCLA