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IGVFDS7344QYUY

released
GRU
File Set Type
experimental data
Summary
single-cell ATAC-seq (SHARE-seq)
Assay Term
single-cell ATAC-seq
Sample Summaries
  • Homo sapiens induced pluripotent stem pooled differentiated cell specimen induced to endodermal cell for 2 days (cellular sub pool: SS-PKR 184)
Protocols
Aliases
buenrostro-bernstein:scATAC Lib 469
Submitter Comment
Does not have corresponding scRNA seq MeasurementSet due to failed QC
Attribution
Jason Buenrostro, Broad

Sequencing Results (Illumina)

30 items
Read Names
fastq
reads
R1
8875
Read 1
22LMVNLT4
1.4 GB
Jason Buenrostro, Broad
validated
fastq
reads
R2
8683
Read 2
22LMVNLT4
1.3 GB
Jason Buenrostro, Broad
validated
fastq
reads
R1
8683
Read 1
22LMVNLT4
1.4 GB
Jason Buenrostro, Broad
validated
fastq
reads
R2
825
Read 2
22773CLT3
1.6 GB
Jason Buenrostro, Broad
validated
fastq
reads
I1
8491
Barcode index
22LMVNLT4
896 MB
Jason Buenrostro, Broad
validated
fastq
reads
R2
8875
Read 2
22LMVNLT4
1.3 GB
Jason Buenrostro, Broad
validated
fastq
reads
R1
807
Read 1
22773CLT3
3.6 GB
Jason Buenrostro, Broad
validated
fastq
reads
I1
825
Barcode index
22773CLT3
1.6 GB
Jason Buenrostro, Broad
validated
fastq
reads
R2
8587
Read 2
22LMVNLT4
1.2 GB
Jason Buenrostro, Broad
validated
fastq
reads
I1
8971
Barcode index
22LMVNLT4
827 MB
Jason Buenrostro, Broad
validated

Samples

1 item
Accession
Type
Sample Terms
Associated Construct Library Sets
Summary
InVitroSystem
Homo sapiens induced pluripotent stem pooled differentiated cell specimen induced to endodermal cell for 2 days (cellular sub pool: SS-PKR 184)

Donors

100 items
Aliases
  • buenrostro-bernstein:Donor 1860
unspecified
Homo sapiens
  • buenrostro-bernstein:Donor 1850
unspecified
Homo sapiens
  • buenrostro-bernstein:Donor 1816
unspecified
Homo sapiens
  • buenrostro-bernstein:Donor 1862
unspecified
Homo sapiens
  • buenrostro-bernstein:Donor 1834
unspecified
Homo sapiens
  • buenrostro-bernstein:Donor 1876
unspecified
Homo sapiens
  • buenrostro-bernstein:Donor 1828
unspecified
Homo sapiens
  • buenrostro-bernstein:Donor 1892
unspecified
Homo sapiens
  • buenrostro-bernstein:Donor 1745
unspecified
Homo sapiens
  • buenrostro-bernstein:Donor 1867
unspecified
Homo sapiens