IGVFDS7344QYUY

released
GRU
1{
2    "@context": "/terms/",
3    "@id": "/measurement-sets/IGVFDS7344QYUY/",
4    "@type": [
5        "MeasurementSet",
6        "FileSet",
7        "Item"
8    ],
9    "accession": "IGVFDS7344QYUY",
10    "aliases": [
11        "buenrostro-bernstein:scATAC Lib 469"
12    ],
13    "assay_term": {
14        "@id": "/assay-terms/OBI_0002764/",
15        "assay_slims": [
16            "chromatin accessibility"
17        ],
18        "status": "released",
19        "term_name": "single-cell ATAC-seq"
20    },
21    "audit": {
22        "INTERNAL_ACTION": [
23            {
24                "category": "missing publication",
25                "detail": "In vitro system [IGVFSM3417JSMJ](/in-vitro-systems/IGVFSM3417JSMJ/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
26                "level": 30,
27                "level_name": "INTERNAL_ACTION",
28                "name": "audit_sample_missing_publication",
29                "path": "/in-vitro-systems/IGVFSM3417JSMJ/"
30            },
31            {
32                "category": "missing publication",
33                "detail": "Measurement set [IGVFDS7344QYUY](/measurement-sets/IGVFDS7344QYUY/) has no `publications`. Released and archived file sets are expected to be associated with a publication.",
34                "level": 30,
35                "level_name": "INTERNAL_ACTION",
36                "name": "audit_file_set_missing_publication",
37                "path": "/measurement-sets/IGVFDS7344QYUY/"
38            },
39            {
40                "category": "mismatched status",
41                "detail": "Released measurement set [IGVFDS7344QYUY](/measurement-sets/IGVFDS7344QYUY/) has in progress subobject tabular file [IGVFFI0400MBIM](/tabular-files/IGVFFI0400MBIM/).",
42                "level": 30,
43                "level_name": "INTERNAL_ACTION",
44                "name": "audit_item_status",
45                "path": "/measurement-sets/IGVFDS7344QYUY/"
46            },
47            {
48                "category": "mismatched status",
49                "detail": "Released measurement set [IGVFDS7344QYUY](/measurement-sets/IGVFDS7344QYUY/) has in progress subobject tabular file [IGVFFI5875LDWP](/tabular-files/IGVFFI5875LDWP/).",
50                "level": 30,
51                "level_name": "INTERNAL_ACTION",
52                "name": "audit_item_status",
53                "path": "/measurement-sets/IGVFDS7344QYUY/"
54            }
55        ],
56        "NOT_COMPLIANT": [
57            {
58                "category": "missing multiome size",
59                "detail": "Measurement set [IGVFDS7344QYUY](/measurement-sets/IGVFDS7344QYUY/) has no `multiome_size`. Measurement sets from multiome assays are expected to specify a multiome size.",
60                "level": 50,
61                "level_name": "NOT_COMPLIANT",
62                "name": "audit_related_multiome_datasets",
63                "path": "/measurement-sets/IGVFDS7344QYUY/"
64            }
65        ]
66    },
67    "award": {
68        "@id": "/awards/HG011986/",
69        "component": "mapping",
70        "contact_pi": {
71            "@id": "/users/33c6eb70-e143-4f77-9661-4b3905737daa/",
72            "title": "Jason Buenrostro"
73        },
74        "title": "A foundational resource of functional elements, TF footprints and gene regulatory interactions"
75    },
76    "control_for": [],
77    "controlled_access": true,
78    "creation_timestamp": "2024-08-20T14:56:05.377034+00:00",
79    "data_use_limitation_summaries": [
80        "GRU"
81    ],
82    "donors": [
83        {
84            "@id": "/human-donors/IGVFDO4379UQON/",
85            "accession": "IGVFDO4379UQON",
86            "aliases": [
87                "buenrostro-bernstein:Donor 1842"
88            ],
89            "sex": "unspecified",
90            "status": "released",
91            "taxa": "Homo sapiens"
92        },
93        {
94            "@id": "/human-donors/IGVFDO0186ZZOL/",
95            "accession": "IGVFDO0186ZZOL",
96            "aliases": [
97                "buenrostro-bernstein:Donor 1862"
98            ],
99            "sex": "unspecified",
100            "status": "released",
101            "taxa": "Homo sapiens"
102        },
103        {
104            "@id": "/human-donors/IGVFDO0436YOXD/",
105            "accession": "IGVFDO0436YOXD",
106            "aliases": [
107                "buenrostro-bernstein:Donor 1745"
108            ],
109            "sex": "unspecified",
110            "status": "released",
111            "taxa": "Homo sapiens"
112        },
113        {
114            "@id": "/human-donors/IGVFDO9737GFZX/",
115            "accession": "IGVFDO9737GFZX",
116            "aliases": [
117                "buenrostro-bernstein:Donor 1839"
118            ],
119            "sex": "unspecified",
120            "status": "released",
121            "taxa": "Homo sapiens"
122        },
123        {
124            "@id": "/human-donors/IGVFDO4197GLLD/",
125            "accession": "IGVFDO4197GLLD",
126            "aliases": [
127                "buenrostro-bernstein:Donor 1866"
128            ],
129            "sex": "unspecified",
130            "status": "released",
131            "taxa": "Homo sapiens"
132        },
133        {
134            "@id": "/human-donors/IGVFDO1429GCHH/",
135            "accession": "IGVFDO1429GCHH",
136            "aliases": [
137                "buenrostro-bernstein:Donor 1810"
138            ],
139            "sex": "unspecified",
140            "status": "released",
141            "taxa": "Homo sapiens"
142        },
143        {
144            "@id": "/human-donors/IGVFDO9301UFXR/",
145            "accession": "IGVFDO9301UFXR",
146            "aliases": [
147                "buenrostro-bernstein:Donor 1815"
148            ],
149            "sex": "unspecified",
150            "status": "released",
151            "taxa": "Homo sapiens"
152        },
153        {
154            "@id": "/human-donors/IGVFDO4141QBHD/",
155            "accession": "IGVFDO4141QBHD",
156            "aliases": [
157                "buenrostro-bernstein:Donor 1883"
158            ],
159            "sex": "unspecified",
160            "status": "released",
161            "taxa": "Homo sapiens"
162        },
163        {
164            "@id": "/human-donors/IGVFDO3773GAHC/",
165            "accession": "IGVFDO3773GAHC",
166            "aliases": [
167                "buenrostro-bernstein:Donor 1817"
168            ],
169            "sex": "unspecified",
170            "status": "released",
171            "taxa": "Homo sapiens"
172        },
173        {
174            "@id": "/human-donors/IGVFDO7567RWAK/",
175            "accession": "IGVFDO7567RWAK",
176            "aliases": [
177                "buenrostro-bernstein:Donor 1857"
178            ],
179            "sex": "unspecified",
180            "status": "released",
181            "taxa": "Homo sapiens"
182        },
183        {
184            "@id": "/human-donors/IGVFDO0285FFEG/",
185            "accession": "IGVFDO0285FFEG",
186            "aliases": [
187                "buenrostro-bernstein:Donor 1828"
188            ],
189            "sex": "unspecified",
190            "status": "released",
191            "taxa": "Homo sapiens"
192        },
193        {
194            "@id": "/human-donors/IGVFDO0452ROLO/",
195            "accession": "IGVFDO0452ROLO",
196            "aliases": [
197                "buenrostro-bernstein:Donor 1867"
198            ],
199            "sex": "unspecified",
200            "status": "released",
201            "taxa": "Homo sapiens"
202        },
203        {
204            "@id": "/human-donors/IGVFDO1318DUVG/",
205            "accession": "IGVFDO1318DUVG",
206            "aliases": [
207                "buenrostro-bernstein:Donor 1833"
208            ],
209            "sex": "unspecified",
210            "status": "released",
211            "taxa": "Homo sapiens"
212        },
213        {
214            "@id": "/human-donors/IGVFDO5686BULO/",
215            "accession": "IGVFDO5686BULO",
216            "aliases": [
217                "buenrostro-bernstein:Donor 1870"
218            ],
219            "sex": "unspecified",
220            "status": "released",
221            "taxa": "Homo sapiens"
222        },
223        {
224            "@id": "/human-donors/IGVFDO6704FGWL/",
225            "accession": "IGVFDO6704FGWL",
226            "aliases": [
227                "buenrostro-bernstein:Donor 1875"
228            ],
229            "sex": "unspecified",
230            "status": "released",
231            "taxa": "Homo sapiens"
232        },
233        {
234            "@id": "/human-donors/IGVFDO2372UULO/",
235            "accession": "IGVFDO2372UULO",
236            "aliases": [
237                "buenrostro-bernstein:Donor 1840"
238            ],
239            "sex": "unspecified",
240            "status": "released",
241            "taxa": "Homo sapiens"
242        },
243        {
244            "@id": "/human-donors/IGVFDO3469EFJR/",
245            "accession": "IGVFDO3469EFJR",
246            "aliases": [
247                "buenrostro-bernstein:Donor 1741"
248            ],
249            "sex": "unspecified",
250            "status": "released",
251            "taxa": "Homo sapiens"
252        },
253        {
254            "@id": "/human-donors/IGVFDO2453FLSI/",
255            "accession": "IGVFDO2453FLSI",
256            "aliases": [
257                "buenrostro-bernstein:Donor 1832"
258            ],
259            "sex": "unspecified",
260            "status": "released",
261            "taxa": "Homo sapiens"
262        },
263        {
264            "@id": "/human-donors/IGVFDO0455AULY/",
265            "accession": "IGVFDO0455AULY",
266            "aliases": [
267                "buenrostro-bernstein:Donor 1814"
268            ],
269            "sex": "unspecified",
270            "status": "released",
271            "taxa": "Homo sapiens"
272        },
273        {
274            "@id": "/human-donors/IGVFDO3707NTZB/",
275            "accession": "IGVFDO3707NTZB",
276            "aliases": [
277                "buenrostro-bernstein:Donor 1853"
278            ],
279            "sex": "unspecified",
280            "status": "released",
281            "taxa": "Homo sapiens"
282        },
283        {
284            "@id": "/human-donors/IGVFDO0916PWWE/",
285            "accession": "IGVFDO0916PWWE",
286            "aliases": [
287                "buenrostro-bernstein:Donor 1845"
288            ],
289            "sex": "unspecified",
290            "status": "released",
291            "taxa": "Homo sapiens"
292        },
293        {
294            "@id": "/human-donors/IGVFDO5074GHND/",
295            "accession": "IGVFDO5074GHND",
296            "aliases": [
297                "buenrostro-bernstein:Donor 1890"
298            ],
299            "sex": "unspecified",
300            "status": "released",
301            "taxa": "Homo sapiens"
302        },
303        {
304            "@id": "/human-donors/IGVFDO8979DYIF/",
305            "accession": "IGVFDO8979DYIF",
306            "aliases": [
307                "buenrostro-bernstein:Donor 1743"
308            ],
309            "sex": "unspecified",
310            "status": "released",
311            "taxa": "Homo sapiens"
312        },
313        {
314            "@id": "/human-donors/IGVFDO0597VIVH/",
315            "accession": "IGVFDO0597VIVH",
316            "aliases": [
317                "buenrostro-bernstein:Donor 1874"
318            ],
319            "sex": "unspecified",
320            "status": "released",
321            "taxa": "Homo sapiens"
322        },
323        {
324            "@id": "/human-donors/IGVFDO5829IPZL/",
325            "accession": "IGVFDO5829IPZL",
326            "aliases": [
327                "buenrostro-bernstein:Donor 1772"
328            ],
329            "sex": "unspecified",
330            "status": "released",
331            "taxa": "Homo sapiens"
332        },
333        {
334            "@id": "/human-donors/IGVFDO3184WKWK/",
335            "accession": "IGVFDO3184WKWK",
336            "aliases": [
337                "buenrostro-bernstein:Donor 1861"
338            ],
339            "sex": "unspecified",
340            "status": "released",
341            "taxa": "Homo sapiens"
342        },
343        {
344            "@id": "/human-donors/IGVFDO2628QOSP/",
345            "accession": "IGVFDO2628QOSP",
346            "aliases": [
347                "buenrostro-bernstein:Donor 1830"
348            ],
349            "sex": "unspecified",
350            "status": "released",
351            "taxa": "Homo sapiens"
352        },
353        {
354            "@id": "/human-donors/IGVFDO2015BBZM/",
355            "accession": "IGVFDO2015BBZM",
356            "aliases": [
357                "buenrostro-bernstein:Donor 1813"
358            ],
359            "sex": "unspecified",
360            "status": "released",
361            "taxa": "Homo sapiens"
362        },
363        {
364            "@id": "/human-donors/IGVFDO1502TPVD/",
365            "accession": "IGVFDO1502TPVD",
366            "aliases": [
367                "buenrostro-bernstein:Donor 1849"
368            ],
369            "sex": "unspecified",
370            "status": "released",
371            "taxa": "Homo sapiens"
372        },
373        {
374            "@id": "/human-donors/IGVFDO8776OLQD/",
375            "accession": "IGVFDO8776OLQD",
376            "aliases": [
377                "buenrostro-bernstein:Donor 1744"
378            ],
379            "sex": "unspecified",
380            "status": "released",
381            "taxa": "Homo sapiens"
382        },
383        {
384            "@id": "/human-donors/IGVFDO1906JPPE/",
385            "accession": "IGVFDO1906JPPE",
386            "aliases": [
387                "buenrostro-bernstein:Donor 1893"
388            ],
389            "sex": "unspecified",
390            "status": "released",
391            "taxa": "Homo sapiens"
392        },
393        {
394            "@id": "/human-donors/IGVFDO7440MWLG/",
395            "accession": "IGVFDO7440MWLG",
396            "aliases": [
397                "buenrostro-bernstein:Donor 1846"
398            ],
399            "sex": "unspecified",
400            "status": "released",
401            "taxa": "Homo sapiens"
402        },
403        {
404            "@id": "/human-donors/IGVFDO3937NOVL/",
405            "accession": "IGVFDO3937NOVL",
406            "aliases": [
407                "buenrostro-bernstein:Donor 1858"
408            ],
409            "sex": "unspecified",
410            "status": "released",
411            "taxa": "Homo sapiens"
412        },
413        {
414            "@id": "/human-donors/IGVFDO9594EWNE/",
415            "accession": "IGVFDO9594EWNE",
416            "aliases": [
417                "buenrostro-bernstein:Donor 1878"
418            ],
419            "sex": "unspecified",
420            "status": "released",
421            "taxa": "Homo sapiens"
422        },
423        {
424            "@id": "/human-donors/IGVFDO1165TQMX/",
425            "accession": "IGVFDO1165TQMX",
426            "aliases": [
427                "buenrostro-bernstein:Donor 1887"
428            ],
429            "sex": "unspecified",
430            "status": "released",
431            "taxa": "Homo sapiens"
432        },
433        {
434            "@id": "/human-donors/IGVFDO5342CGKC/",
435            "accession": "IGVFDO5342CGKC",
436            "aliases": [
437                "buenrostro-bernstein:Donor 1882"
438            ],
439            "sex": "unspecified",
440            "status": "released",
441            "taxa": "Homo sapiens"
442        },
443        {
444            "@id": "/human-donors/IGVFDO1697JGEF/",
445            "accession": "IGVFDO1697JGEF",
446            "aliases": [
447                "buenrostro-bernstein:Donor 1835"
448            ],
449            "sex": "unspecified",
450            "status": "released",
451            "taxa": "Homo sapiens"
452        },
453        {
454            "@id": "/human-donors/IGVFDO5895ABMM/",
455            "accession": "IGVFDO5895ABMM",
456            "aliases": [
457                "buenrostro-bernstein:Donor 1824"
458            ],
459            "sex": "unspecified",
460            "status": "released",
461            "taxa": "Homo sapiens"
462        },
463        {
464            "@id": "/human-donors/IGVFDO1094DCZZ/",
465            "accession": "IGVFDO1094DCZZ",
466            "aliases": [
467                "buenrostro-bernstein:Donor 1885"
468            ],
469            "sex": "unspecified",
470            "status": "released",
471            "taxa": "Homo sapiens"
472        },
473        {
474            "@id": "/human-donors/IGVFDO6295KHUE/",
475            "accession": "IGVFDO6295KHUE",
476            "aliases": [
477                "buenrostro-bernstein:Donor 1863"
478            ],
479            "sex": "unspecified",
480            "status": "released",
481            "taxa": "Homo sapiens"
482        },
483        {
484            "@id": "/human-donors/IGVFDO9707NUOC/",
485            "accession": "IGVFDO9707NUOC",
486            "aliases": [
487                "buenrostro-bernstein:Donor 1859"
488            ],
489            "sex": "unspecified",
490            "status": "released",
491            "taxa": "Homo sapiens"
492        },
493        {
494            "@id": "/human-donors/IGVFDO6626TJEC/",
495            "accession": "IGVFDO6626TJEC",
496            "aliases": [
497                "buenrostro-bernstein:Donor 1888"
498            ],
499            "sex": "unspecified",
500            "status": "released",
501            "taxa": "Homo sapiens"
502        },
503        {
504            "@id": "/human-donors/IGVFDO2044WGSW/",
505            "accession": "IGVFDO2044WGSW",
506            "aliases": [
507                "buenrostro-bernstein:Donor 1856"
508            ],
509            "sex": "unspecified",
510            "status": "released",
511            "taxa": "Homo sapiens"
512        },
513        {
514            "@id": "/human-donors/IGVFDO2131TKFT/",
515            "accession": "IGVFDO2131TKFT",
516            "aliases": [
517                "buenrostro-bernstein:Donor 1811"
518            ],
519            "sex": "unspecified",
520            "status": "released",
521            "taxa": "Homo sapiens"
522        },
523        {
524            "@id": "/human-donors/IGVFDO5748WCDL/",
525            "accession": "IGVFDO5748WCDL",
526            "aliases": [
527                "buenrostro-bernstein:Donor 1889"
528            ],
529            "sex": "unspecified",
530            "status": "released",
531            "taxa": "Homo sapiens"
532        },
533        {
534            "@id": "/human-donors/IGVFDO7983CLUG/",
535            "accession": "IGVFDO7983CLUG",
536            "aliases": [
537                "buenrostro-bernstein:Donor 1852"
538            ],
539            "sex": "unspecified",
540            "status": "released",
541            "taxa": "Homo sapiens"
542        },
543        {
544            "@id": "/human-donors/IGVFDO8727EFXZ/",
545            "accession": "IGVFDO8727EFXZ",
546            "aliases": [
547                "buenrostro-bernstein:Donor 1831"
548            ],
549            "sex": "unspecified",
550            "status": "released",
551            "taxa": "Homo sapiens"
552        },
553        {
554            "@id": "/human-donors/IGVFDO6969ZGNB/",
555            "accession": "IGVFDO6969ZGNB",
556            "aliases": [
557                "buenrostro-bernstein:Donor 1844"
558            ],
559            "sex": "unspecified",
560            "status": "released",
561            "taxa": "Homo sapiens"
562        },
563        {
564            "@id": "/human-donors/IGVFDO2627YUXH/",
565            "accession": "IGVFDO2627YUXH",
566            "aliases": [
567                "buenrostro-bernstein:Donor 1886"
568            ],
569            "sex": "unspecified",
570            "status": "released",
571            "taxa": "Homo sapiens"
572        },
573        {
574            "@id": "/human-donors/IGVFDO2028ZXZQ/",
575            "accession": "IGVFDO2028ZXZQ",
576            "aliases": [
577                "buenrostro-bernstein:Donor 1820"
578            ],
579            "sex": "unspecified",
580            "status": "released",
581            "taxa": "Homo sapiens"
582        },
583        {
584            "@id": "/human-donors/IGVFDO7817ENDD/",
585            "accession": "IGVFDO7817ENDD",
586            "aliases": [
587                "buenrostro-bernstein:Donor 1877"
588            ],
589            "sex": "unspecified",
590            "status": "released",
591            "taxa": "Homo sapiens"
592        },
593        {
594            "@id": "/human-donors/IGVFDO6316KUFG/",
595            "accession": "IGVFDO6316KUFG",
596            "aliases": [
597                "buenrostro-bernstein:Donor 1871"
598            ],
599            "sex": "unspecified",
600            "status": "released",
601            "taxa": "Homo sapiens"
602        },
603        {
604            "@id": "/human-donors/IGVFDO5257YVJL/",
605            "accession": "IGVFDO5257YVJL",
606            "aliases": [
607                "buenrostro-bernstein:Donor 1825"
608            ],
609            "sex": "unspecified",
610            "status": "released",
611            "taxa": "Homo sapiens"
612        },
613        {
614            "@id": "/human-donors/IGVFDO8772PWON/",
615            "accession": "IGVFDO8772PWON",
616            "aliases": [
617                "buenrostro-bernstein:Donor 1873"
618            ],
619            "sex": "unspecified",
620            "status": "released",
621            "taxa": "Homo sapiens"
622        },
623        {
624            "@id": "/human-donors/IGVFDO0527HIIJ/",
625            "accession": "IGVFDO0527HIIJ",
626            "aliases": [
627                "buenrostro-bernstein:Donor 1838"
628            ],
629            "sex": "unspecified",
630            "status": "released",
631            "taxa": "Homo sapiens"
632        },
633        {
634            "@id": "/human-donors/IGVFDO1215CYXN/",
635            "accession": "IGVFDO1215CYXN",
636            "aliases": [
637                "buenrostro-bernstein:Donor 1843"
638            ],
639            "sex": "unspecified",
640            "status": "released",
641            "taxa": "Homo sapiens"
642        },
643        {
644            "@id": "/human-donors/IGVFDO3364ORGK/",
645            "accession": "IGVFDO3364ORGK",
646            "aliases": [
647                "buenrostro-bernstein:Donor 1897"
648            ],
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1875            "status": "released",
1876            "submitted_file_name": "gs://sw-igvf-submission/seqspec-v3/cirm/IGVFFI6607UUUA_seqspec.yaml.gz",
1877            "upload_status": "validated"
1878        },
1879        {
1880            "@id": "/configuration-files/IGVFFI7960KMEQ/",
1881            "accession": "IGVFFI7960KMEQ",
1882            "aliases": [
1883                "buenrostro-bernstein:SS-LS_8971_seqspec"
1884            ],
1885            "content_type": "seqspec",
1886            "creation_timestamp": "2025-03-28T19:38:38.899504+00:00",
1887            "file_format": "yaml",
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1890            "md5sum": "87ee7c21408551e4559a138b5bb40edf",
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1892            "status": "released",
1893            "submitted_file_name": "gs://sw-igvf-submission/seqspec-v3/cirm/IGVFFI6336LGKV_seqspec.yaml.gz",
1894            "upload_status": "validated"
1895        },
1896        {
1897            "@id": "/configuration-files/IGVFFI8011JSGY/",
1898            "accession": "IGVFFI8011JSGY",
1899            "aliases": [
1900                "buenrostro-bernstein:SS-LS_9067_seqspec"
1901            ],
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1903            "creation_timestamp": "2025-03-28T19:54:55.543628+00:00",
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1909            "status": "released",
1910            "submitted_file_name": "gs://sw-igvf-submission/seqspec-v3/cirm/IGVFFI5409NMWO_seqspec.yaml.gz",
1911            "upload_status": "validated"
1912        },
1913        {
1914            "@id": "/configuration-files/IGVFFI2278YLYS/",
1915            "accession": "IGVFFI2278YLYS",
1916            "aliases": [
1917                "buenrostro-bernstein:SS-LS_8875_seqspec"
1918            ],
1919            "content_type": "seqspec",
1920            "creation_timestamp": "2025-03-28T19:22:58.776877+00:00",
1921            "file_format": "yaml",
1922            "file_size": 1332,
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1924            "md5sum": "0145c0ebaef3a2d86c7373092e9ecefd",
1925            "s3_uri": "s3://igvf-files/2025/03/28/1bc7abda-5e13-46f4-a7b4-36b935015eb2/IGVFFI2278YLYS.yaml.gz",
1926            "status": "released",
1927            "submitted_file_name": "gs://sw-igvf-submission/seqspec-v3/cirm/IGVFFI0830TIGE_seqspec.yaml.gz",
1928            "upload_status": "validated"
1929        },
1930        {
1931            "@id": "/configuration-files/IGVFFI1505JXLO/",
1932            "accession": "IGVFFI1505JXLO",
1933            "aliases": [
1934                "buenrostro-bernstein:SS-LS_9163_seqspec"
1935            ],
1936            "content_type": "seqspec",
1937            "creation_timestamp": "2025-03-28T20:12:29.882824+00:00",
1938            "file_format": "yaml",
1939            "file_size": 1332,
1940            "href": "/configuration-files/IGVFFI1505JXLO/@@download/IGVFFI1505JXLO.yaml.gz",
1941            "md5sum": "0ce92ab0adbab1bbd12267ab23567592",
1942            "s3_uri": "s3://igvf-files/2025/03/28/7d5358a1-7906-45f5-992d-070faf3617fa/IGVFFI1505JXLO.yaml.gz",
1943            "status": "released",
1944            "submitted_file_name": "gs://sw-igvf-submission/seqspec-v3/cirm/IGVFFI6080XBPZ_seqspec.yaml.gz",
1945            "upload_status": "validated"
1946        }
1947    ],
1948    "input_for": [
1949        "/analysis-sets/IGVFDS1960HVIW/"
1950    ],
1951    "lab": {
1952        "@id": "/labs/jason-buenrostro/",
1953        "title": "Jason Buenrostro, Broad"
1954    },
1955    "onlist_files": [
1956        "/tabular-files/IGVFFI5875LDWP/",
1957        "/tabular-files/IGVFFI0400MBIM/"
1958    ],
1959    "onlist_method": "product",
1960    "preferred_assay_title": "SHARE-seq",
1961    "protocols": [
1962        "https://www.protocols.io/view/share-seq-protocol-v2-2-di3y4gpw"
1963    ],
1964    "release_timestamp": "2025-04-22T04:08:00.645290+00:00",
1965    "samples": [
1966        {
1967            "@id": "/in-vitro-systems/IGVFSM3417JSMJ/",
1968            "@type": [
1969                "InVitroSystem",
1970                "Biosample",
1971                "Sample",
1972                "Item"
1973            ],
1974            "accession": "IGVFSM3417JSMJ",
1975            "aliases": [
1976                "buenrostro-bernstein:BioSam 4873_SS-PKR 184"
1977            ],
1978            "cellular_sub_pool": "SS-PKR 184",
1979            "classifications": [
1980                "pooled cell specimen",
1981                "differentiated cell specimen"
1982            ],
1983            "institutional_certificates": [
1984                {
1985                    "@id": "/institutional-certificates/26d0a66b-5c86-4326-b305-806fb13d2ae5/",
1986                    "certificate_identifier": "IP113-01",
1987                    "controlled_access": true,
1988                    "data_use_limitation": "GRU",
1989                    "status": "released"
1990                },
1991                {
1992                    "@id": "/institutional-certificates/31aa03ce-8ec8-409b-8a6c-c115297c10f4/",
1993                    "certificate_identifier": "IP113-02",
1994                    "controlled_access": true,
1995                    "data_use_limitation": "GRU",
1996                    "status": "released"
1997                },
1998                {
1999                    "@id": "/institutional-certificates/07b1e07f-a66a-4bd5-9c1a-a8632e734789/",
2000                    "certificate_identifier": "IP113-03",
2001                    "controlled_access": true,
2002                    "data_use_limitation": "GRU",
2003                    "status": "released"
2004                },
2005                {
2006                    "@id": "/institutional-certificates/3c3d7aa1-227e-43c8-8c68-2d3ad8e280b9/",
2007                    "certificate_identifier": "IP113-04",
2008                    "controlled_access": true,
2009                    "data_use_limitation": "GRU",
2010                    "status": "released"
2011                },
2012                {
2013                    "@id": "/institutional-certificates/dff99f30-9e29-4410-bdb4-eed4b70432cf/",
2014                    "certificate_identifier": "IP113-05",
2015                    "controlled_access": true,
2016                    "data_use_limitation": "GRU",
2017                    "status": "released"
2018                },
2019                {
2020                    "@id": "/institutional-certificates/10318039-d9e6-4dd0-8d92-4c551493b9fe/",
2021                    "certificate_identifier": "IP113-06",
2022                    "controlled_access": true,
2023                    "data_use_limitation": "GRU",
2024                    "status": "released"
2025                },
2026                {
2027                    "@id": "/institutional-certificates/32e245d0-ae4b-4334-b826-ed5bf00f111f/",
2028                    "certificate_identifier": "IP113-07",
2029                    "controlled_access": true,
2030                    "data_use_limitation": "GRU",
2031                    "status": "released"
2032                },
2033                {
2034                    "@id": "/institutional-certificates/4542d787-ea26-4176-b01c-5c45ca11b802/",
2035                    "certificate_identifier": "IP113-14",
2036                    "controlled_access": true,
2037                    "data_use_limitation": "GRU",
2038                    "status": "released"
2039                },
2040                {
2041                    "@id": "/institutional-certificates/35c8ed2e-cf1b-4cdd-a6ee-e766e7c3d954/",
2042                    "certificate_identifier": "IP113-08",
2043                    "controlled_access": true,
2044                    "data_use_limitation": "GRU",
2045                    "status": "released"
2046                },
2047                {
2048                    "@id": "/institutional-certificates/70134af2-c4fd-43b4-96a6-9133a119a715/",
2049                    "certificate_identifier": "IP113-09",
2050                    "controlled_access": true,
2051                    "data_use_limitation": "GRU",
2052                    "status": "released"
2053                },
2054                {
2055                    "@id": "/institutional-certificates/8a10acc0-7e24-4912-8833-10141ccf9b5f/",
2056                    "certificate_identifier": "IP113-10",
2057                    "controlled_access": true,
2058                    "data_use_limitation": "GRU",
2059                    "status": "released"
2060                },
2061                {
2062                    "@id": "/institutional-certificates/b117b3dd-25d9-4262-a262-630852050446/",
2063                    "certificate_identifier": "IP113-12",
2064                    "controlled_access": true,
2065                    "data_use_limitation": "GRU",
2066                    "status": "released"
2067                },
2068                {
2069                    "@id": "/institutional-certificates/21c46421-0482-4d0d-ad82-99387fc6add6/",
2070                    "certificate_identifier": "IP113-11",
2071                    "controlled_access": true,
2072                    "data_use_limitation": "GRU",
2073                    "status": "released"
2074                },
2075                {
2076                    "@id": "/institutional-certificates/74917306-afc2-447b-88b2-a97e3e758518/",
2077                    "certificate_identifier": "IP113-15",
2078                    "controlled_access": true,
2079                    "data_use_limitation": "GRU",
2080                    "status": "released"
2081                },
2082                {
2083                    "@id": "/institutional-certificates/ae438897-696e-4b7a-98a2-e72438a76b31/",
2084                    "certificate_identifier": "IP113-13",
2085                    "controlled_access": true,
2086                    "data_use_limitation": "GRU",
2087                    "status": "released"
2088                },
2089                {
2090                    "@id": "/institutional-certificates/fc5dc734-179b-45b8-bb32-e4f57a6bf59c/",
2091                    "certificate_identifier": "IP113-16",
2092                    "controlled_access": true,
2093                    "data_use_limitation": "GRU",
2094                    "status": "released"
2095                },
2096                {
2097                    "@id": "/institutional-certificates/ebddd6b0-c53f-4e05-a451-b5167df7cebd/",
2098                    "certificate_identifier": "IP113-18",
2099                    "controlled_access": true,
2100                    "data_use_limitation": "GRU",
2101                    "status": "released"
2102                },
2103                {
2104                    "@id": "/institutional-certificates/cf9e5e74-e4e6-40d4-bf04-c86fafe9d17e/",
2105                    "certificate_identifier": "IP113-17",
2106                    "controlled_access": true,
2107                    "data_use_limitation": "GRU",
2108                    "status": "released"
2109                },
2110                {
2111                    "@id": "/institutional-certificates/109b8309-9842-4caa-80f7-9f3d1be0c8c1/",
2112                    "certificate_identifier": "IP113-19",
2113                    "controlled_access": true,
2114                    "data_use_limitation": "GRU",
2115                    "status": "released"
2116                },
2117                {
2118                    "@id": "/institutional-certificates/d1431ff4-0095-49ba-a179-5fe34043afeb/",
2119                    "certificate_identifier": "IP113-20",
2120                    "controlled_access": true,
2121                    "data_use_limitation": "GRU",
2122                    "status": "released"
2123                }
2124            ],
2125            "sample_terms": [
2126                {
2127                    "@id": "/sample-terms/EFO_0004905/",
2128                    "@type": [
2129                        "SampleTerm",
2130                        "OntologyTerm",
2131                        "Item"
2132                    ],
2133                    "status": "released",
2134                    "summary": "induced pluripotent stem cell",
2135                    "term_name": "induced pluripotent stem cell"
2136                }
2137            ],
2138            "status": "released",
2139            "summary": "Homo sapiens induced pluripotent stem pooled differentiated cell specimen induced to endodermal cell for 2 days (cellular sub pool: SS-PKR 184)",
2140            "targeted_sample_term": {
2141                "@id": "/sample-terms/CL_0000223/",
2142                "status": "released",
2143                "term_name": "endodermal cell"
2144            },
2145            "taxa": "Homo sapiens"
2146        }
2147    ],
2148    "schema_version": "26",
2149    "status": "released",
2150    "submitted_by": {
2151        "@id": "/users/c0838247-5022-46cf-a8fa-426e73bf4c94/",
2152        "title": "Siddarth Wekhande"
2153    },
2154    "submitted_files_timestamp": "2024-08-20T15:06:55.352805+00:00",
2155    "submitter_comment": "Does not have corresponding scRNA seq MeasurementSet due to failed QC",
2156    "summary": "single-cell ATAC-seq (SHARE-seq)",
2157    "uuid": "6d0a177c-ba14-439f-ab3d-5c181d16fc6e"
2158}