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INDEXED
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MeasurementSet
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IGVFDS6675BDQA
IGVFDS6675BDQA
released
Json view
File Set Type
experimental data
Summary
scATAC-seq
Assay Term
single-cell ATAC-seq
Sample Summaries
mouse embryonic stem differentiated cell specimen induced to embryoid body for 21 days (cellular sub pool: 10XlaneB), male, Mus musculus WD44
Protocols
https://www.protocols.io/file/n92rb7r27.pdf
Aliases
jay-shendure:scATAC_mEBs_rep1_10XlaneB_reads
Publications
Multiplex profiling of developmental cis-regulatory elements with quantitative single-cell expression reporters
Sequencing Results (Illumina)
8 items
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Associated seqspec Files
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI0014UJDI
fastq
reads
R1
2
IGVFFI8240YUYH
Illumina NextSeq 500
H3HFJBGXG
1
3.5 GB
Jay Shendure, UW
validated
IGVFFI2437FQNY
fastq
reads
R2
2
IGVFFI8240YUYH
Illumina NextSeq 500
H3HFJBGXG
1
3.6 GB
Jay Shendure, UW
validated
IGVFFI3626JLET
fastq
reads
R1
1
IGVFFI0221JPNZ
Illumina NextSeq 500
H3JK7BGXG
1
3.6 GB
Jay Shendure, UW
validated
IGVFFI4136YACE
fastq
reads
I2
2
IGVFFI8240YUYH
Illumina NextSeq 500
H3HFJBGXG
1
1.8 GB
Jay Shendure, UW
validated
IGVFFI4139VQCR
fastq
reads
I1
1
IGVFFI0221JPNZ
Illumina NextSeq 500
H3JK7BGXG
1
798 MB
Jay Shendure, UW
validated
IGVFFI7875UNHZ
fastq
reads
I2
1
IGVFFI0221JPNZ
Illumina NextSeq 500
H3JK7BGXG
1
1.8 GB
Jay Shendure, UW
validated
IGVFFI8821SFDV
fastq
reads
I1
2
IGVFFI8240YUYH
Illumina NextSeq 500
H3HFJBGXG
1
791 MB
Jay Shendure, UW
validated
IGVFFI9316OPTY
fastq
reads
R2
1
IGVFFI0221JPNZ
Illumina NextSeq 500
H3JK7BGXG
1
3.6 GB
Jay Shendure, UW
validated
Samples
Donors
File Sets Using This Measurement Set as an Input
Attribution
Award
HG011966
Principal Investigator(s)
Jay Shendure
,
Nadav Ahituv
,
Martin Kircher
Contact P.I.
Jay Shendure
Lab
Jay Shendure, UW