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IGVFDS6675BDQA

released
File Set Type
experimental data
Summary
scATAC-seq
Assay Term
single-cell ATAC-seq
Sample Summaries
  • Mus musculus WD44 (male) mouse embryonic stem differentiated cell specimen induced to embryoid body for 21 days (cellular sub pool: 10XlaneB)
Protocols
Aliases
jay-shendure:scATAC_mEBs_rep1_10XlaneB_reads
Publications
Attribution
Jay Shendure, UW

Sequencing Results (Illumina)

8 items
Read Names
fastq
reads
R1
2
H3HFJBGXG
1
3.5 GB
Jay Shendure, UW
validated
fastq
reads
R2
2
H3HFJBGXG
1
3.6 GB
Jay Shendure, UW
validated
fastq
reads
R1
1
H3JK7BGXG
1
3.6 GB
Jay Shendure, UW
validated
fastq
reads
I2
2
H3HFJBGXG
1
1.8 GB
Jay Shendure, UW
validated
fastq
reads
I1
1
H3JK7BGXG
1
798 MB
Jay Shendure, UW
validated
fastq
reads
I2
1
H3JK7BGXG
1
1.8 GB
Jay Shendure, UW
validated
fastq
reads
I1
2
H3HFJBGXG
1
791 MB
Jay Shendure, UW
validated
fastq
reads
R2
1
H3JK7BGXG
1
3.6 GB
Jay Shendure, UW
validated

Samples

1 item
Accession
Type
Sample Terms
Associated Construct Library Sets
Summary
InVitroSystem
Mus musculus WD44 (male) mouse embryonic stem differentiated cell specimen induced to embryoid body for 21 days (cellular sub pool: 10XlaneB)

Donors

1 item
Accession
Aliases
Sex
Taxa
  • jay-shendure:WD44_donor
male
Mus musculus

File Sets Using This Measurement Set as an Input

1 item
Accession
Type
Summary
Aliases
Lab
AnalysisSet
scATAC-seq: fragments, peaks, signal, sparse peak count matrix
  • jay-shendure:analysis_set_scATAC_mEBs
Jay Shendure, UW