Home

IGVFDS6675BDQA

released
File Set Type
experimental data
Summary
scATAC-seq
Assay Term
single-cell ATAC-seq
Sample Summaries
  • mouse embryonic stem differentiated cell specimen induced to embryoid body for 21 days (cellular sub pool: 10XlaneB), male, Mus musculus WD44
Protocols
Aliases
jay-shendure:scATAC_mEBs_rep1_10XlaneB_reads
Publications

Sequencing Results (Illumina)

8 items
fastq
reads
R1
2
Illumina NextSeq 500
H3HFJBGXG
1
3.5 GB
Jay Shendure, UW
validated
fastq
reads
R2
2
Illumina NextSeq 500
H3HFJBGXG
1
3.6 GB
Jay Shendure, UW
validated
fastq
reads
R1
1
Illumina NextSeq 500
H3JK7BGXG
1
3.6 GB
Jay Shendure, UW
validated
fastq
reads
I2
2
Illumina NextSeq 500
H3HFJBGXG
1
1.8 GB
Jay Shendure, UW
validated
fastq
reads
I1
1
Illumina NextSeq 500
H3JK7BGXG
1
798 MB
Jay Shendure, UW
validated
fastq
reads
I2
1
Illumina NextSeq 500
H3JK7BGXG
1
1.8 GB
Jay Shendure, UW
validated
fastq
reads
I1
2
Illumina NextSeq 500
H3HFJBGXG
1
791 MB
Jay Shendure, UW
validated
fastq
reads
R2
1
Illumina NextSeq 500
H3JK7BGXG
1
3.6 GB
Jay Shendure, UW
validated

Samples

1 item
Accession
Type
Sample Terms
Summary
InVitroSystem
mouse embryonic stem differentiated cell specimen induced to embryoid body for 21 days (cellular sub pool: 10XlaneB), male, Mus musculus WD44

Donors

1 item
Accession
Aliases
Sex
Taxa
  • jay-shendure:WD44_donor
male
Mus musculus

File Sets Using This Measurement Set as an Input

1 item
Accession
Type
Summary
Aliases
Lab
AnalysisSet
principal analysis of scATAC-seq data
  • jay-shendure:analysis_set_scATAC_mEBs
Jay Shendure, UW

Attribution

Award
HG011966
Principal Investigator(s)
Contact P.I.
Jay Shendure
Lab
Jay Shendure, UW