{
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"FileSet",
"Item"
],
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],
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],
"status": "released",
"term_name": "single-cell ATAC-seq"
},
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"NOT_COMPLIANT": [
{
"category": "missing read names",
"detail": "Measurement set [IGVFDS6675BDQA](/measurement-sets/IGVFDS6675BDQA/) has a sequence file [IGVFFI3626JLET](/sequence-files/IGVFFI3626JLET/) missing `read_names`. Sequence files are expected to have read names.",
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"level_name": "NOT_COMPLIANT",
"name": "audit_single_cell_read_names",
"path": "/measurement-sets/IGVFDS6675BDQA/"
},
{
"category": "missing read names",
"detail": "Measurement set [IGVFDS6675BDQA](/measurement-sets/IGVFDS6675BDQA/) has a sequence file [IGVFFI9316OPTY](/sequence-files/IGVFFI9316OPTY/) missing `read_names`. Sequence files are expected to have read names.",
"level": 50,
"level_name": "NOT_COMPLIANT",
"name": "audit_single_cell_read_names",
"path": "/measurement-sets/IGVFDS6675BDQA/"
},
{
"category": "missing read names",
"detail": "Measurement set [IGVFDS6675BDQA](/measurement-sets/IGVFDS6675BDQA/) has a sequence file [IGVFFI0014UJDI](/sequence-files/IGVFFI0014UJDI/) missing `read_names`. Sequence files are expected to have read names.",
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"level_name": "NOT_COMPLIANT",
"name": "audit_single_cell_read_names",
"path": "/measurement-sets/IGVFDS6675BDQA/"
},
{
"category": "missing read names",
"detail": "Measurement set [IGVFDS6675BDQA](/measurement-sets/IGVFDS6675BDQA/) has a sequence file [IGVFFI2437FQNY](/sequence-files/IGVFFI2437FQNY/) missing `read_names`. Sequence files are expected to have read names.",
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"level_name": "NOT_COMPLIANT",
"name": "audit_single_cell_read_names",
"path": "/measurement-sets/IGVFDS6675BDQA/"
},
{
"category": "missing strand specificity",
"detail": "Measurement set [IGVFDS6675BDQA](/measurement-sets/IGVFDS6675BDQA/) is missing required `strand_specificity`. Single-cell assays are expected to specify strand specificity.",
"level": 50,
"level_name": "NOT_COMPLIANT",
"name": "audit_missing_strand_specificity",
"path": "/measurement-sets/IGVFDS6675BDQA/"
},
{
"category": "missing barcode onlist",
"detail": "Measurement set [IGVFDS6675BDQA](/measurement-sets/IGVFDS6675BDQA/) has an `assay_term` of single-cell ATAC-seq but no `onlist_files` nor `onlist_methods`. Measurement sets to be processed via the single cell uniform pipeline are expected to have onlist files and onlist methods indicated.",
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"level_name": "NOT_COMPLIANT",
"name": "audit_onlist",
"path": "/measurement-sets/IGVFDS6675BDQA/"
}
]
},
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{
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