IGVFDS6296WMHB

released

GRU

File Set Type

experimental data

Summary

single-cell ATAC-seq (SHARE-seq)

Assay Term

single-cell ATAC-seq

Sample Summaries

Homo sapiens induced pluripotent stem pooled differentiated cell specimen induced to hepatic oval stem cell for 7 days (cellular sub pool: SS-PKR 200)

Protocols

https://www.protocols.io/view/share-seq-protocol-v2-2-di3y4gpw

Aliases

buenrostro-bernstein:scATAC Lib 557

Submitter Comment

Does not have corresponding scRNA seq MeasurementSet due to failed QC

Attribution

Jason Buenrostro, Broad

(

HG011986 — Jason Buenrostro

)

Sequencing Results (Illumina)

6 items

Read Names

IGVFFI0127FCXQ

fastq

reads

833

IGVFFI7182JGPY

Illumina NovaSeq X

22773CLT3

786 MB

Jason Buenrostro, Broad

validated

IGVFFI1800HDNJ

fastq

reads

815

IGVFFI8123AMAH

Illumina NovaSeq X

22773CLT3

1.6 GB

Jason Buenrostro, Broad

validated

IGVFFI3277KOZG

fastq

reads

815

IGVFFI8123AMAH

Illumina NovaSeq X

22773CLT3

786 MB

Jason Buenrostro, Broad

validated

IGVFFI4409ZVYL

fastq

reads

833

Barcode index

IGVFFI7182JGPY

Illumina NovaSeq X

22773CLT3

701 MB

Jason Buenrostro, Broad

validated

IGVFFI6621GSAZ

fastq

reads

833

IGVFFI7182JGPY

Illumina NovaSeq X

22773CLT3

1.6 GB

Jason Buenrostro, Broad

validated

IGVFFI6646RZRL

fastq

reads

815

Barcode index

IGVFFI8123AMAH

Illumina NovaSeq X

22773CLT3

703 MB

Jason Buenrostro, Broad

validated

Samples

1 item

Accession

Type

Sample Terms

Associated Construct Library Sets

Summary

IGVFSM2073NQAO

InVitroSystem

induced pluripotent stem cell

Homo sapiens induced pluripotent stem pooled differentiated cell specimen induced to hepatic oval stem cell for 7 days (cellular sub pool: SS-PKR 200)