{
"@context": "/terms/",
"@id": "/measurement-sets/IGVFDS6296WMHB/",
"@type": [
"MeasurementSet",
"FileSet",
"Item"
],
"accession": "IGVFDS6296WMHB",
"aliases": [
"buenrostro-bernstein:scATAC Lib 557"
],
"assay_term": {
"@id": "/assay-terms/OBI_0002764/",
"assay_slims": [
"chromatin accessibility"
],
"status": "released",
"term_name": "single-cell ATAC-seq"
},
"audit": {
"INTERNAL_ACTION": [
{
"category": "missing publication",
"detail": "Measurement set [IGVFDS6296WMHB](/measurement-sets/IGVFDS6296WMHB/) has no `publications`. Released and archived file sets are expected to be associated with a publication.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_file_set_missing_publication",
"path": "/measurement-sets/IGVFDS6296WMHB/"
},
{
"category": "mismatched status",
"detail": "Released measurement set [IGVFDS6296WMHB](/measurement-sets/IGVFDS6296WMHB/) has in progress subobject tabular file [IGVFFI5522PXUM](/tabular-files/IGVFFI5522PXUM/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/measurement-sets/IGVFDS6296WMHB/"
},
{
"category": "mismatched status",
"detail": "Released measurement set [IGVFDS6296WMHB](/measurement-sets/IGVFDS6296WMHB/) has in progress subobject tabular file [IGVFFI0400MBIM](/tabular-files/IGVFFI0400MBIM/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/measurement-sets/IGVFDS6296WMHB/"
},
{
"category": "missing publication",
"detail": "In vitro system [IGVFSM2073NQAO](/in-vitro-systems/IGVFSM2073NQAO/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_sample_missing_publication",
"path": "/in-vitro-systems/IGVFSM2073NQAO/"
}
],
"NOT_COMPLIANT": [
{
"category": "missing multiome size",
"detail": "Measurement set [IGVFDS6296WMHB](/measurement-sets/IGVFDS6296WMHB/) has no `multiome_size`. Measurement sets from multiome assays are expected to specify a multiome size.",
"level": 50,
"level_name": "NOT_COMPLIANT",
"name": "audit_related_multiome_datasets",
"path": "/measurement-sets/IGVFDS6296WMHB/"
}
]
},
"award": {
"@id": "/awards/HG011986/",
"component": "mapping",
"contact_pi": {
"@id": "/users/33c6eb70-e143-4f77-9661-4b3905737daa/",
"title": "Jason Buenrostro"
},
"title": "A foundational resource of functional elements, TF footprints and gene regulatory interactions"
},
"control_for": [],
"controlled_access": true,
"creation_timestamp": "2024-08-20T14:56:18.572476+00:00",
"data_use_limitation_summaries": [
"GRU"
],
"donors": [
{
"@id": "/human-donors/IGVFDO9942ECYN/",
"accession": "IGVFDO9942ECYN",
"aliases": [
"buenrostro-bernstein:Donor 1742"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO5669IKNL/",
"accession": "IGVFDO5669IKNL",
"aliases": [
"buenrostro-bernstein:Donor 1950"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO1255IJEH/",
"accession": "IGVFDO1255IJEH",
"aliases": [
"buenrostro-bernstein:Donor 1975"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO1064GZAS/",
"accession": "IGVFDO1064GZAS",
"aliases": [
"buenrostro-bernstein:Donor 1982"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO2476MGFK/",
"accession": "IGVFDO2476MGFK",
"aliases": [
"buenrostro-bernstein:Donor 1901"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO9164SEDG/",
"accession": "IGVFDO9164SEDG",
"aliases": [
"buenrostro-bernstein:Donor 1911"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO1512EGWF/",
"accession": "IGVFDO1512EGWF",
"aliases": [
"buenrostro-bernstein:Donor 1981"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO0436YOXD/",
"accession": "IGVFDO0436YOXD",
"aliases": [
"buenrostro-bernstein:Donor 1745"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO2318JQUM/",
"accession": "IGVFDO2318JQUM",
"aliases": [
"buenrostro-bernstein:Donor 1791"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO2674JORG/",
"accession": "IGVFDO2674JORG",
"aliases": [
"buenrostro-bernstein:Donor 1782"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO0417TJMX/",
"accession": "IGVFDO0417TJMX",
"aliases": [
"buenrostro-bernstein:Donor 1907"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO1363RREJ/",
"accession": "IGVFDO1363RREJ",
"aliases": [
"buenrostro-bernstein:Donor 1939"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO1467HGMO/",
"accession": "IGVFDO1467HGMO",
"aliases": [
"buenrostro-bernstein:Donor 1969"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO5859XGBW/",
"accession": "IGVFDO5859XGBW",
"aliases": [
"buenrostro-bernstein:Donor 1971"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO2217VSIY/",
"accession": "IGVFDO2217VSIY",
"aliases": [
"buenrostro-bernstein:Donor 1955"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO4923LWHA/",
"accession": "IGVFDO4923LWHA",
"aliases": [
"buenrostro-bernstein:Donor 1957"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO4924NHKE/",
"accession": "IGVFDO4924NHKE",
"aliases": [
"buenrostro-bernstein:Donor 1970"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO9835EEAJ/",
"accession": "IGVFDO9835EEAJ",
"aliases": [
"buenrostro-bernstein:Donor 1951"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO3469EFJR/",
"accession": "IGVFDO3469EFJR",
"aliases": [
"buenrostro-bernstein:Donor 1741"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO9561MSAD/",
"accession": "IGVFDO9561MSAD",
"aliases": [
"buenrostro-bernstein:Donor 1976"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO6704QEET/",
"accession": "IGVFDO6704QEET",
"aliases": [
"buenrostro-bernstein:Donor 1917"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO3560WDAC/",
"accession": "IGVFDO3560WDAC",
"aliases": [
"buenrostro-bernstein:Donor 1940"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO5249VKYA/",
"accession": "IGVFDO5249VKYA",
"aliases": [
"buenrostro-bernstein:Donor 1954"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO4048DUKN/",
"accession": "IGVFDO4048DUKN",
"aliases": [
"buenrostro-bernstein:Donor 1968"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO0508COBR/",
"accession": "IGVFDO0508COBR",
"aliases": [
"buenrostro-bernstein:Donor 1963"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO5869XCBR/",
"accession": "IGVFDO5869XCBR",
"aliases": [
"buenrostro-bernstein:Donor 1945"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO7384GLJG/",
"accession": "IGVFDO7384GLJG",
"aliases": [
"buenrostro-bernstein:Donor 1985"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO2605TXDO/",
"accession": "IGVFDO2605TXDO",
"aliases": [
"buenrostro-bernstein:Donor 1787"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO4974JBDF/",
"accession": "IGVFDO4974JBDF",
"aliases": [
"buenrostro-bernstein:Donor 1906"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO5473XXFQ/",
"accession": "IGVFDO5473XXFQ",
"aliases": [
"buenrostro-bernstein:Donor 1927"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO0980QZSD/",
"accession": "IGVFDO0980QZSD",
"aliases": [
"buenrostro-bernstein:Donor 1946"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO6064BKKJ/",
"accession": "IGVFDO6064BKKJ",
"aliases": [
"buenrostro-bernstein:Donor 1980"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO0123YZDN/",
"accession": "IGVFDO0123YZDN",
"aliases": [
"buenrostro-bernstein:Donor 1943"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO6296JPHU/",
"accession": "IGVFDO6296JPHU",
"aliases": [
"buenrostro-bernstein:Donor 1918"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO4747GRSS/",
"accession": "IGVFDO4747GRSS",
"aliases": [
"buenrostro-bernstein:Donor 1910"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO8124AYVF/",
"accession": "IGVFDO8124AYVF",
"aliases": [
"buenrostro-bernstein:Donor 1740"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO6183QMMP/",
"accession": "IGVFDO6183QMMP",
"aliases": [
"buenrostro-bernstein:Donor 1788"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO8195QBTP/",
"accession": "IGVFDO8195QBTP",
"aliases": [
"buenrostro-bernstein:Donor 1958"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO2540COFN/",
"accession": "IGVFDO2540COFN",
"aliases": [
"buenrostro-bernstein:Donor 1912"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO3006ZNMC/",
"accession": "IGVFDO3006ZNMC",
"aliases": [
"buenrostro-bernstein:Donor 1928"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO6331OQFD/",
"accession": "IGVFDO6331OQFD",
"aliases": [
"buenrostro-bernstein:Donor 1920"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO0211CZWE/",
"accession": "IGVFDO0211CZWE",
"aliases": [
"buenrostro-bernstein:Donor 1909"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO5046RYOV/",
"accession": "IGVFDO5046RYOV",
"aliases": [
"buenrostro-bernstein:Donor 1949"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO4983SZXB/",
"accession": "IGVFDO4983SZXB",
"aliases": [
"buenrostro-bernstein:Donor 1988"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO4092SMML/",
"accession": "IGVFDO4092SMML",
"aliases": [
"buenrostro-bernstein:Donor 1941"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO2967OWUY/",
"accession": "IGVFDO2967OWUY",
"aliases": [
"buenrostro-bernstein:Donor 1989"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO8979DYIF/",
"accession": "IGVFDO8979DYIF",
"aliases": [
"buenrostro-bernstein:Donor 1743"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO3082FYQJ/",
"accession": "IGVFDO3082FYQJ",
"aliases": [
"buenrostro-bernstein:Donor 1972"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO8459PAOB/",
"accession": "IGVFDO8459PAOB",
"aliases": [
"buenrostro-bernstein:Donor 1953"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO8042WODZ/",
"accession": "IGVFDO8042WODZ",
"aliases": [
"buenrostro-bernstein:Donor 1944"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO5150ROJL/",
"accession": "IGVFDO5150ROJL",
"aliases": [
"buenrostro-bernstein:Donor 1900"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO3385RWXZ/",
"accession": "IGVFDO3385RWXZ",
"aliases": [
"buenrostro-bernstein:Donor 1780"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO3701XUXY/",
"accession": "IGVFDO3701XUXY",
"aliases": [
"buenrostro-bernstein:Donor 1959"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO2649JQXX/",
"accession": "IGVFDO2649JQXX",
"aliases": [
"buenrostro-bernstein:Donor 1659"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO9907ZZVD/",
"accession": "IGVFDO9907ZZVD",
"aliases": [
"buenrostro-bernstein:Donor 1902"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO9815AMKV/",
"accession": "IGVFDO9815AMKV",
"aliases": [
"buenrostro-bernstein:Donor 1926"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO4207CTJX/",
"accession": "IGVFDO4207CTJX",
"aliases": [
"buenrostro-bernstein:Donor 1923"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO9770WYQG/",
"accession": "IGVFDO9770WYQG",
"aliases": [
"buenrostro-bernstein:Donor 1966"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO4449DKJZ/",
"accession": "IGVFDO4449DKJZ",
"aliases": [
"buenrostro-bernstein:Donor 1919"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO8886WODZ/",
"accession": "IGVFDO8886WODZ",
"aliases": [
"buenrostro-bernstein:Donor 1922"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO8271RBMD/",
"accession": "IGVFDO8271RBMD",
"aliases": [
"buenrostro-bernstein:Donor 1936"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO8776OLQD/",
"accession": "IGVFDO8776OLQD",
"aliases": [
"buenrostro-bernstein:Donor 1744"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO5920NCRK/",
"accession": "IGVFDO5920NCRK",
"aliases": [
"buenrostro-bernstein:Donor 1973"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO8033HKMP/",
"accession": "IGVFDO8033HKMP",
"aliases": [
"buenrostro-bernstein:Donor 1947"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO9063CMXP/",
"accession": "IGVFDO9063CMXP",
"aliases": [
"buenrostro-bernstein:Donor 1979"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO3652LJLN/",
"accession": "IGVFDO3652LJLN",
"aliases": [
"buenrostro-bernstein:Donor 1932"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO9956LYMG/",
"accession": "IGVFDO9956LYMG",
"aliases": [
"buenrostro-bernstein:Donor 1794"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO7506JTFC/",
"accession": "IGVFDO7506JTFC",
"aliases": [
"buenrostro-bernstein:Donor 1931"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO9261YIGN/",
"accession": "IGVFDO9261YIGN",
"aliases": [
"buenrostro-bernstein:Donor 1930"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO5566VPJU/",
"accession": "IGVFDO5566VPJU",
"aliases": [
"buenrostro-bernstein:Donor 1908"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO1417AZJE/",
"accession": "IGVFDO1417AZJE",
"aliases": [
"buenrostro-bernstein:Donor 1986"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO8663MIYC/",
"accession": "IGVFDO8663MIYC",
"aliases": [
"buenrostro-bernstein:Donor 1925"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO8004EZUP/",
"accession": "IGVFDO8004EZUP",
"aliases": [
"buenrostro-bernstein:Donor 1962"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO2583SIHN/",
"accession": "IGVFDO2583SIHN",
"aliases": [
"buenrostro-bernstein:Donor 1938"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO2893BVNI/",
"accession": "IGVFDO2893BVNI",
"aliases": [
"buenrostro-bernstein:Donor 1942"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO9115TZAP/",
"accession": "IGVFDO9115TZAP",
"aliases": [
"buenrostro-bernstein:Donor 1766"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO4041WUVL/",
"accession": "IGVFDO4041WUVL",
"aliases": [
"buenrostro-bernstein:Donor 1921"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO2811ZFFP/",
"accession": "IGVFDO2811ZFFP",
"aliases": [
"buenrostro-bernstein:Donor 1913"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO6075RUJJ/",
"accession": "IGVFDO6075RUJJ",
"aliases": [
"buenrostro-bernstein:Donor 1935"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO4283QEWA/",
"accession": "IGVFDO4283QEWA",
"aliases": [
"buenrostro-bernstein:Donor 1974"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO6156FWSA/",
"accession": "IGVFDO6156FWSA",
"aliases": [
"buenrostro-bernstein:Donor 1790"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO3154SUBV/",
"accession": "IGVFDO3154SUBV",
"aliases": [
"buenrostro-bernstein:Donor 1746"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO3633ISAY/",
"accession": "IGVFDO3633ISAY",
"aliases": [
"buenrostro-bernstein:Donor 1915"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO3881ZKMA/",
"accession": "IGVFDO3881ZKMA",
"aliases": [
"buenrostro-bernstein:Donor 1984"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO7991MYZO/",
"accession": "IGVFDO7991MYZO",
"aliases": [
"buenrostro-bernstein:Donor 1978"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO7018SAYO/",
"accession": "IGVFDO7018SAYO",
"aliases": [
"buenrostro-bernstein:Donor 1903"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO4761JIBM/",
"accession": "IGVFDO4761JIBM",
"aliases": [
"buenrostro-bernstein:Donor 1960"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO0279GJBF/",
"accession": "IGVFDO0279GJBF",
"aliases": [
"buenrostro-bernstein:Donor 1937"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO5885PQJM/",
"accession": "IGVFDO5885PQJM",
"aliases": [
"buenrostro-bernstein:Donor 1658"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO6338EGAL/",
"accession": "IGVFDO6338EGAL",
"aliases": [
"buenrostro-bernstein:Donor 1977"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO0948FTCE/",
"accession": "IGVFDO0948FTCE",
"aliases": [
"buenrostro-bernstein:Donor 1952"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO1279HYUU/",
"accession": "IGVFDO1279HYUU",
"aliases": [
"buenrostro-bernstein:Donor 1924"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO2588YUMG/",
"accession": "IGVFDO2588YUMG",
"aliases": [
"buenrostro-bernstein:Donor 1905"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO9079MLOT/",
"accession": "IGVFDO9079MLOT",
"aliases": [
"buenrostro-bernstein:Donor 1933"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO3010FULG/",
"accession": "IGVFDO3010FULG",
"aliases": [
"buenrostro-bernstein:Donor 1929"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO1533MKVB/",
"accession": "IGVFDO1533MKVB",
"aliases": [
"buenrostro-bernstein:Donor 1739"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO3115AJIV/",
"accession": "IGVFDO3115AJIV",
"aliases": [
"buenrostro-bernstein:Donor 1983"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO2166LUJJ/",
"accession": "IGVFDO2166LUJJ",
"aliases": [
"buenrostro-bernstein:Donor 1934"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO5934RGQS/",
"accession": "IGVFDO5934RGQS",
"aliases": [
"buenrostro-bernstein:Donor 1956"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
}
],
"externally_hosted": false,
"file_set_type": "experimental data",
"files": [
{
"@id": "/sequence-files/IGVFFI1800HDNJ/",
"accession": "IGVFFI1800HDNJ",
"aliases": [
"buenrostro-bernstein:SS-LS_815_R1"
],
"content_type": "reads",
"controlled_access": true,
"creation_timestamp": "2024-08-20T15:11:04.562426+00:00",
"file_format": "fastq",
"file_size": 1635440975,
"href": "/sequence-files/IGVFFI1800HDNJ/@@download/IGVFFI1800HDNJ.fastq.gz",
"md5sum": "755b7b9022b2089d3297ad03ab97b0ba",
"s3_uri": "s3://igvf-restricted-files/2024/08/20/36edcd28-cbbd-4508-bb5f-d4ec4db97ea6/IGVFFI1800HDNJ.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "released",
"submitted_file_name": "gs://broad-epi-ss-lane-subsets/SS-CoPA-990_L7_SS-PKR-200_2022-APRIL-R1-PLATE2-3rd-THIRD_R1.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI3277KOZG/",
"accession": "IGVFFI3277KOZG",
"aliases": [
"buenrostro-bernstein:SS-LS_815_R2"
],
"content_type": "reads",
"controlled_access": true,
"creation_timestamp": "2024-08-20T15:11:05.713945+00:00",
"file_format": "fastq",
"file_size": 786269673,
"href": "/sequence-files/IGVFFI3277KOZG/@@download/IGVFFI3277KOZG.fastq.gz",
"md5sum": "363f8b40c7121073031d45114dfc75c4",
"s3_uri": "s3://igvf-restricted-files/2024/08/20/e183b74f-8aeb-4bb9-85a8-49f58e31b1e3/IGVFFI3277KOZG.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "released",
"submitted_file_name": "gs://fc-bde04173-e601-40f3-84b5-6c7f0d9be441/submissions/final-outputs/07e69bd4-7fc9-44f3-915e-796979c95b5f/wf_create_fastq_barcode/57ddf301-9667-4ef5-bc18-7522920de680/call-create_fastq_barcode/shard-1/SS-CoPA-990_L7_SS-PKR-200_2022-APRIL-R1-PLATE2-3rd-THIRD_R2.R2.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI6621GSAZ/",
"accession": "IGVFFI6621GSAZ",
"aliases": [
"buenrostro-bernstein:SS-LS_833_R1"
],
"content_type": "reads",
"controlled_access": true,
"creation_timestamp": "2024-08-20T15:19:19.469514+00:00",
"file_format": "fastq",
"file_size": 1641357487,
"href": "/sequence-files/IGVFFI6621GSAZ/@@download/IGVFFI6621GSAZ.fastq.gz",
"md5sum": "23272a0d78f8deb1dd1a3175cae7c990",
"s3_uri": "s3://igvf-restricted-files/2024/08/20/c07de8d4-53cb-443e-8929-b29bb17ea5fa/IGVFFI6621GSAZ.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "released",
"submitted_file_name": "gs://broad-epi-ss-lane-subsets/SS-CoPA-990_L8_SS-PKR-200_2022-APRIL-R1-PLATE2-3rd-THIRD_R1.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI0127FCXQ/",
"accession": "IGVFFI0127FCXQ",
"aliases": [
"buenrostro-bernstein:SS-LS_833_R2"
],
"content_type": "reads",
"controlled_access": true,
"creation_timestamp": "2024-08-20T15:19:20.431568+00:00",
"file_format": "fastq",
"file_size": 786419145,
"href": "/sequence-files/IGVFFI0127FCXQ/@@download/IGVFFI0127FCXQ.fastq.gz",
"md5sum": "52ae944a0a8a555d5b6b8dc8d6c042db",
"s3_uri": "s3://igvf-restricted-files/2024/08/20/44b1c7bd-701f-4518-83e8-5f7bdfe55e08/IGVFFI0127FCXQ.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "released",
"submitted_file_name": "gs://fc-bde04173-e601-40f3-84b5-6c7f0d9be441/submissions/final-outputs/07e69bd4-7fc9-44f3-915e-796979c95b5f/wf_create_fastq_barcode/57ddf301-9667-4ef5-bc18-7522920de680/call-create_fastq_barcode/shard-0/SS-CoPA-990_L8_SS-PKR-200_2022-APRIL-R1-PLATE2-3rd-THIRD_R2.R2.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/configuration-files/IGVFFI7182JGPY/",
"accession": "IGVFFI7182JGPY",
"aliases": [
"buenrostro-bernstein:SS-LS_833_seqspec"
],
"content_type": "seqspec",
"creation_timestamp": "2024-09-18T14:35:38.156758+00:00",
"file_format": "yaml",
"file_size": 1339,
"href": "/configuration-files/IGVFFI7182JGPY/@@download/IGVFFI7182JGPY.yaml.gz",
"md5sum": "49ab2b979c5189a4617aa8cac1fe50ff",
"s3_uri": "s3://igvf-files/2024/09/18/cf15400c-404f-4cba-b569-08d027cab851/IGVFFI7182JGPY.yaml.gz",
"status": "released",
"submitted_file_name": "gs://sw-igvf-submission/seqspec-v3/cirm/IGVFFI6621GSAZ_seqspec.yaml.gz",
"upload_status": "validated"
},
{
"@id": "/configuration-files/IGVFFI8123AMAH/",
"accession": "IGVFFI8123AMAH",
"aliases": [
"buenrostro-bernstein:SS-LS_815_seqspec"
],
"content_type": "seqspec",
"creation_timestamp": "2024-09-18T14:35:54.639095+00:00",
"file_format": "yaml",
"file_size": 1343,
"href": "/configuration-files/IGVFFI8123AMAH/@@download/IGVFFI8123AMAH.yaml.gz",
"md5sum": "84f4e492cb9ce1cdf2e1ddc58a4c02a7",
"s3_uri": "s3://igvf-files/2024/09/18/ebb6270e-8bb5-408e-95f3-1684ccdb14f9/IGVFFI8123AMAH.yaml.gz",
"status": "released",
"submitted_file_name": "gs://sw-igvf-submission/seqspec-v3/cirm/IGVFFI1800HDNJ_seqspec.yaml.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI6646RZRL/",
"accession": "IGVFFI6646RZRL",
"aliases": [
"buenrostro-bernstein:SS-LS_815_barcode"
],
"content_type": "reads",
"controlled_access": true,
"creation_timestamp": "2025-03-25T02:25:36.342208+00:00",
"file_format": "fastq",
"file_size": 703104782,
"href": "/sequence-files/IGVFFI6646RZRL/@@download/IGVFFI6646RZRL.fastq.gz",
"md5sum": "466bcc7a4c4354c7061448af9cb846cd",
"s3_uri": "s3://igvf-restricted-files/2025/03/25/b4addf10-7020-4249-bd66-e452456b6d9d/IGVFFI6646RZRL.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "released",
"submitted_file_name": "gs://fc-bde04173-e601-40f3-84b5-6c7f0d9be441/submissions/final-outputs/07e69bd4-7fc9-44f3-915e-796979c95b5f/wf_create_fastq_barcode/57ddf301-9667-4ef5-bc18-7522920de680/call-create_fastq_barcode/shard-1/SS-CoPA-990_L7_SS-PKR-200_2022-APRIL-R1-PLATE2-3rd-THIRD_R2.barcode_file.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI4409ZVYL/",
"accession": "IGVFFI4409ZVYL",
"aliases": [
"buenrostro-bernstein:SS-LS_833_barcode"
],
"content_type": "reads",
"controlled_access": true,
"creation_timestamp": "2025-03-25T02:26:06.849418+00:00",
"file_format": "fastq",
"file_size": 700906986,
"href": "/sequence-files/IGVFFI4409ZVYL/@@download/IGVFFI4409ZVYL.fastq.gz",
"md5sum": "def49c34098d9bac14f9451c21ea51cc",
"s3_uri": "s3://igvf-restricted-files/2025/03/25/6399b7fe-ae91-4b28-9805-ff13fcc42d7d/IGVFFI4409ZVYL.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "released",
"submitted_file_name": "gs://fc-bde04173-e601-40f3-84b5-6c7f0d9be441/submissions/final-outputs/07e69bd4-7fc9-44f3-915e-796979c95b5f/wf_create_fastq_barcode/57ddf301-9667-4ef5-bc18-7522920de680/call-create_fastq_barcode/shard-0/SS-CoPA-990_L8_SS-PKR-200_2022-APRIL-R1-PLATE2-3rd-THIRD_R2.barcode_file.fastq.gz",
"upload_status": "validated"
}
],
"input_for": [
"/analysis-sets/IGVFDS1394DVYV/"
],
"lab": {
"@id": "/labs/jason-buenrostro/",
"title": "Jason Buenrostro, Broad"
},
"onlist_files": [
"/tabular-files/IGVFFI5522PXUM/",
"/tabular-files/IGVFFI0400MBIM/"
],
"onlist_method": "product",
"preferred_assay_title": "SHARE-seq",
"protocols": [
"https://www.protocols.io/view/share-seq-protocol-v2-2-di3y4gpw"
],
"release_timestamp": "2025-04-22T04:12:06.715979+00:00",
"samples": [
{
"@id": "/in-vitro-systems/IGVFSM2073NQAO/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM2073NQAO",
"aliases": [
"buenrostro-bernstein:BioSam 4883_SS-PKR 200"
],
"cellular_sub_pool": "SS-PKR 200",
"classifications": [
"pooled cell specimen",
"differentiated cell specimen"
],
"institutional_certificates": [
{
"@id": "/institutional-certificates/26d0a66b-5c86-4326-b305-806fb13d2ae5/",
"certificate_identifier": "IP113-01",
"controlled_access": true,
"data_use_limitation": "GRU",
"status": "released"
},
{
"@id": "/institutional-certificates/31aa03ce-8ec8-409b-8a6c-c115297c10f4/",
"certificate_identifier": "IP113-02",
"controlled_access": true,
"data_use_limitation": "GRU",
"status": "released"
},
{
"@id": "/institutional-certificates/07b1e07f-a66a-4bd5-9c1a-a8632e734789/",
"certificate_identifier": "IP113-03",
"controlled_access": true,
"data_use_limitation": "GRU",
"status": "released"
},
{
"@id": "/institutional-certificates/3c3d7aa1-227e-43c8-8c68-2d3ad8e280b9/",
"certificate_identifier": "IP113-04",
"controlled_access": true,
"data_use_limitation": "GRU",
"status": "released"
},
{
"@id": "/institutional-certificates/dff99f30-9e29-4410-bdb4-eed4b70432cf/",
"certificate_identifier": "IP113-05",
"controlled_access": true,
"data_use_limitation": "GRU",
"status": "released"
},
{
"@id": "/institutional-certificates/10318039-d9e6-4dd0-8d92-4c551493b9fe/",
"certificate_identifier": "IP113-06",
"controlled_access": true,
"data_use_limitation": "GRU",
"status": "released"
},
{
"@id": "/institutional-certificates/32e245d0-ae4b-4334-b826-ed5bf00f111f/",
"certificate_identifier": "IP113-07",
"controlled_access": true,
"data_use_limitation": "GRU",
"status": "released"
},
{
"@id": "/institutional-certificates/4542d787-ea26-4176-b01c-5c45ca11b802/",
"certificate_identifier": "IP113-14",
"controlled_access": true,
"data_use_limitation": "GRU",
"status": "released"
},
{
"@id": "/institutional-certificates/35c8ed2e-cf1b-4cdd-a6ee-e766e7c3d954/",
"certificate_identifier": "IP113-08",
"controlled_access": true,
"data_use_limitation": "GRU",
"status": "released"
},
{
"@id": "/institutional-certificates/70134af2-c4fd-43b4-96a6-9133a119a715/",
"certificate_identifier": "IP113-09",
"controlled_access": true,
"data_use_limitation": "GRU",
"status": "released"
},
{
"@id": "/institutional-certificates/8a10acc0-7e24-4912-8833-10141ccf9b5f/",
"certificate_identifier": "IP113-10",
"controlled_access": true,
"data_use_limitation": "GRU",
"status": "released"
},
{
"@id": "/institutional-certificates/b117b3dd-25d9-4262-a262-630852050446/",
"certificate_identifier": "IP113-12",
"controlled_access": true,
"data_use_limitation": "GRU",
"status": "released"
},
{
"@id": "/institutional-certificates/21c46421-0482-4d0d-ad82-99387fc6add6/",
"certificate_identifier": "IP113-11",
"controlled_access": true,
"data_use_limitation": "GRU",
"status": "released"
},
{
"@id": "/institutional-certificates/74917306-afc2-447b-88b2-a97e3e758518/",
"certificate_identifier": "IP113-15",
"controlled_access": true,
"data_use_limitation": "GRU",
"status": "released"
},
{
"@id": "/institutional-certificates/ae438897-696e-4b7a-98a2-e72438a76b31/",
"certificate_identifier": "IP113-13",
"controlled_access": true,
"data_use_limitation": "GRU",
"status": "released"
},
{
"@id": "/institutional-certificates/fc5dc734-179b-45b8-bb32-e4f57a6bf59c/",
"certificate_identifier": "IP113-16",
"controlled_access": true,
"data_use_limitation": "GRU",
"status": "released"
},
{
"@id": "/institutional-certificates/ebddd6b0-c53f-4e05-a451-b5167df7cebd/",
"certificate_identifier": "IP113-18",
"controlled_access": true,
"data_use_limitation": "GRU",
"status": "released"
},
{
"@id": "/institutional-certificates/cf9e5e74-e4e6-40d4-bf04-c86fafe9d17e/",
"certificate_identifier": "IP113-17",
"controlled_access": true,
"data_use_limitation": "GRU",
"status": "released"
},
{
"@id": "/institutional-certificates/109b8309-9842-4caa-80f7-9f3d1be0c8c1/",
"certificate_identifier": "IP113-19",
"controlled_access": true,
"data_use_limitation": "GRU",
"status": "released"
},
{
"@id": "/institutional-certificates/d1431ff4-0095-49ba-a179-5fe34043afeb/",
"certificate_identifier": "IP113-20",
"controlled_access": true,
"data_use_limitation": "GRU",
"status": "released"
}
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0004905/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"status": "released",
"summary": "induced pluripotent stem cell",
"term_name": "induced pluripotent stem cell"
}
],
"status": "released",
"summary": "Homo sapiens induced pluripotent stem pooled differentiated cell specimen induced to hepatic oval stem cell for 7 days (cellular sub pool: SS-PKR 200)",
"targeted_sample_term": {
"@id": "/sample-terms/CL_0002196/",
"status": "released",
"term_name": "hepatic oval stem cell"
},
"taxa": "Homo sapiens"
}
],
"schema_version": "26",
"status": "released",
"submitted_by": {
"@id": "/users/c0838247-5022-46cf-a8fa-426e73bf4c94/",
"title": "Siddarth Wekhande"
},
"submitted_files_timestamp": "2024-08-20T15:11:04.562426+00:00",
"submitter_comment": "Does not have corresponding scRNA seq MeasurementSet due to failed QC",
"summary": "single-cell ATAC-seq (SHARE-seq)",
"uuid": "5e60eb9f-7e8c-4e37-b4ea-dbc95435c6ff"
}