Home
Home
Search (⌘K or ⌃K)
Data
Methodology
Data Model
About
Help
Sign In
INDEXED
Home
/
MeasurementSet
/
IGVFDS6176JWXB
IGVFDS6176JWXB
released
Json view
File Set Type
experimental data
Control Type
unsorted FACS input
Summary
unsorted FACS input CRISPR prime editing Variant-EFFECTS integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
Assay Term
in vitro CRISPR screen using flow cytometry
Sample Summaries
Homo sapiens (male) THP-1 cell line modified with CRISPR prime editing Sp-nCas9-M-MLV RT (PE2), transduced (lentivirus) with a guide library
Protocols
https://www.protocols.io/view/flowfish-with-primeflow-36wgq3q4olk5/v1
Aliases
jesse-engreitz:230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep1-FFrep2-FACS_Input_AmpliconSequencing
Attribution
Jesse Engreitz, Stanford
(
HG011972
—
Jesse Engreitz
)
Sequencing Results (Illumina)
8 items
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Read Names
Associated seqspec Files
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI1894ZOTY
fastq
reads
I1
1
Illumina NextSeq 550
ACCAACTG:TTGT
897 KB
Jesse Engreitz, Stanford
validated
IGVFFI2184FDCH
fastq
reads
I2
1
Illumina NextSeq 550
GGTCCAGA:TTGT
906 KB
Jesse Engreitz, Stanford
validated
IGVFFI2212OMIF
fastq
reads
I1
1
Illumina NextSeq 550
GGTCCAGA:TTGT
891 KB
Jesse Engreitz, Stanford
validated
IGVFFI2217JBBE
fastq
reads
I2
1
Illumina NextSeq 550
ACCAACTG:TTGT
916 KB
Jesse Engreitz, Stanford
validated
IGVFFI7582VIOW
fastq
reads
R1
1
Illumina NextSeq 550
GGTCCAGA:TTGT
3.3 MB
Jesse Engreitz, Stanford
validated
IGVFFI8937AAMQ
fastq
reads
R2
1
Illumina NextSeq 550
GGTCCAGA:TTGT
3.9 MB
Jesse Engreitz, Stanford
validated
IGVFFI8939AUUL
fastq
reads
R2
1
Illumina NextSeq 550
ACCAACTG:TTGT
4.0 MB
Jesse Engreitz, Stanford
validated
IGVFFI9696UWVF
fastq
reads
R1
1
Illumina NextSeq 550
ACCAACTG:TTGT
3.4 MB
Jesse Engreitz, Stanford
validated
Samples
1 item
Accession
Type
Sample Terms
Associated Construct Library Sets
Summary
IGVFSM2185RMNT
InVitroSystem
THP-1
IGVFDS2374NXLW
Homo sapiens (male) THP-1 cell line modified with CRISPR prime editing Sp-nCas9-M-MLV RT (PE2), transduced (lentivirus) with a guide library
Donors
1 item
Accession
Aliases
Sex
Taxa
IGVFDO7359LVPI
igvf:donor_of_THP1
male
Homo sapiens
Associated Construct Library Sets
1 item
Accession
Summary
Library Design Files
IGVFDS2374NXLW
guide (sgRNA) library targeting sequence variants in a genomic locus
Control File Sets
1 item
Accession
Type
Summary
Aliases
Lab
IGVFDS4989HPTW
MeasurementSet
untransfected prime editing Variant-EFFECTS
jesse-engreitz:230531S019-THP1-P151-Amp_PPIF_enhancer-THP1-PE2_Exp1_NegControl_AmpliconSequencing
Jesse Engreitz, Stanford
File Sets Using This Measurement Set as an Input
1 item
Accession
Type
Summary
Aliases
Lab
IGVFDS5031MNRR
AnalysisSet
prime editing Variant-EFFECTS targeting PPIF: variant effects
jesse-engreitz:PPIF_enhancer_tiling_THP1_Variant-FlowFISH_analysis
Jesse Engreitz, Stanford