{
"@context": "/terms/",
"@id": "/measurement-sets/IGVFDS5704ISFI/",
"@type": [
"MeasurementSet",
"FileSet",
"Item"
],
"accession": "IGVFDS5704ISFI",
"aliases": [
"jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep1-FFrep1-BinD_AmpliconSequencing"
],
"assay_term": {
"@id": "/assay-terms/OBI_0003661/",
"status": "released",
"term_name": "in vitro CRISPR screen using flow cytometry"
},
"audit": {
"INTERNAL_ACTION": [
{
"category": "mismatched status",
"detail": "Released in vitro system [IGVFSM9226UZTE](/in-vitro-systems/IGVFSM9226UZTE/) has in progress subobject construct library set [IGVFDS2385DHZO](/construct-library-sets/IGVFDS2385DHZO/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/in-vitro-systems/IGVFSM9226UZTE/"
},
{
"category": "missing sequencing kit",
"detail": "Measurement set [IGVFDS5704ISFI](/measurement-sets/IGVFDS5704ISFI/) has sequence file(s) [IGVFFI5140USUU](/sequence-files/IGVFFI5140USUU/), [IGVFFI6553BZFV](/sequence-files/IGVFFI6553BZFV/), [IGVFFI3684LSEW](/sequence-files/IGVFFI3684LSEW/), [IGVFFI8868GOPR](/sequence-files/IGVFFI8868GOPR/), [IGVFFI9334DIMV](/sequence-files/IGVFFI9334DIMV/), [IGVFFI6306HZBJ](/sequence-files/IGVFFI6306HZBJ/), [IGVFFI2399VDEC](/sequence-files/IGVFFI2399VDEC/), [IGVFFI5814CUST](/sequence-files/IGVFFI5814CUST/), [IGVFFI4370EHQW](/sequence-files/IGVFFI4370EHQW/), [IGVFFI4359TUGO](/sequence-files/IGVFFI4359TUGO/), [IGVFFI3715ITHN](/sequence-files/IGVFFI3715ITHN/), [IGVFFI3493CGNU](/sequence-files/IGVFFI3493CGNU/), [IGVFFI0197BRAF](/sequence-files/IGVFFI0197BRAF/), [IGVFFI4324CZKV](/sequence-files/IGVFFI4324CZKV/), [IGVFFI5141WKEV](/sequence-files/IGVFFI5141WKEV/), [IGVFFI7671ZFQL](/sequence-files/IGVFFI7671ZFQL/), [IGVFFI0171OZDZ](/sequence-files/IGVFFI0171OZDZ/), [IGVFFI5212WAGE](/sequence-files/IGVFFI5212WAGE/), [IGVFFI3194UDCC](/sequence-files/IGVFFI3194UDCC/), [IGVFFI6637MEWE](/sequence-files/IGVFFI6637MEWE/), [IGVFFI1883DKHL](/sequence-files/IGVFFI1883DKHL/), [IGVFFI2147RQPO](/sequence-files/IGVFFI2147RQPO/), [IGVFFI4079EOFQ](/sequence-files/IGVFFI4079EOFQ/), [IGVFFI9286RTEL](/sequence-files/IGVFFI9286RTEL/), [IGVFFI2554UETT](/sequence-files/IGVFFI2554UETT/), [IGVFFI5208MYFF](/sequence-files/IGVFFI5208MYFF/), [IGVFFI6558JYNG](/sequence-files/IGVFFI6558JYNG/), [IGVFFI1014PBZO](/sequence-files/IGVFFI1014PBZO/), [IGVFFI2083YHGP](/sequence-files/IGVFFI2083YHGP/), [IGVFFI7883GSUO](/sequence-files/IGVFFI7883GSUO/), [IGVFFI1505XVNP](/sequence-files/IGVFFI1505XVNP/), [IGVFFI6204YQGV](/sequence-files/IGVFFI6204YQGV/), [IGVFFI5304CPBL](/sequence-files/IGVFFI5304CPBL/), [IGVFFI4462TSLM](/sequence-files/IGVFFI4462TSLM/), [IGVFFI9423VKHN](/sequence-files/IGVFFI9423VKHN/), [IGVFFI0848GDNO](/sequence-files/IGVFFI0848GDNO/), [IGVFFI8039TKUY](/sequence-files/IGVFFI8039TKUY/), [IGVFFI4161KMOW](/sequence-files/IGVFFI4161KMOW/), [IGVFFI5277ZRIE](/sequence-files/IGVFFI5277ZRIE/), [IGVFFI9929QQXR](/sequence-files/IGVFFI9929QQXR/), [IGVFFI5860XGDV](/sequence-files/IGVFFI5860XGDV/), [IGVFFI6213BLQG](/sequence-files/IGVFFI6213BLQG/), [IGVFFI7975NHEB](/sequence-files/IGVFFI7975NHEB/), [IGVFFI7734DPOO](/sequence-files/IGVFFI7734DPOO/), [IGVFFI2843ESSU](/sequence-files/IGVFFI2843ESSU/), [IGVFFI0422PHBM](/sequence-files/IGVFFI0422PHBM/), [IGVFFI7599ABTQ](/sequence-files/IGVFFI7599ABTQ/), [IGVFFI3689PCPR](/sequence-files/IGVFFI3689PCPR/) which lack specification of a `sequencing_kit`. Sequence files should specify a sequencing kit.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_inconsistent_sequencing_kit",
"path": "/measurement-sets/IGVFDS5704ISFI/"
},
{
"category": "missing sequence specification",
"detail": "Measurement set [IGVFDS5704ISFI](/measurement-sets/IGVFDS5704ISFI/) has sequence file(s): [IGVFFI5140USUU](/sequence-files/IGVFFI5140USUU/), [IGVFFI6553BZFV](/sequence-files/IGVFFI6553BZFV/), [IGVFFI3684LSEW](/sequence-files/IGVFFI3684LSEW/), [IGVFFI8868GOPR](/sequence-files/IGVFFI8868GOPR/), [IGVFFI9334DIMV](/sequence-files/IGVFFI9334DIMV/), [IGVFFI6306HZBJ](/sequence-files/IGVFFI6306HZBJ/), [IGVFFI2399VDEC](/sequence-files/IGVFFI2399VDEC/), [IGVFFI5814CUST](/sequence-files/IGVFFI5814CUST/), [IGVFFI4370EHQW](/sequence-files/IGVFFI4370EHQW/), [IGVFFI4359TUGO](/sequence-files/IGVFFI4359TUGO/), [IGVFFI3715ITHN](/sequence-files/IGVFFI3715ITHN/), [IGVFFI3493CGNU](/sequence-files/IGVFFI3493CGNU/), [IGVFFI0197BRAF](/sequence-files/IGVFFI0197BRAF/), [IGVFFI4324CZKV](/sequence-files/IGVFFI4324CZKV/), [IGVFFI5141WKEV](/sequence-files/IGVFFI5141WKEV/), [IGVFFI7671ZFQL](/sequence-files/IGVFFI7671ZFQL/), [IGVFFI0171OZDZ](/sequence-files/IGVFFI0171OZDZ/), [IGVFFI5212WAGE](/sequence-files/IGVFFI5212WAGE/), [IGVFFI3194UDCC](/sequence-files/IGVFFI3194UDCC/), [IGVFFI6637MEWE](/sequence-files/IGVFFI6637MEWE/), [IGVFFI1883DKHL](/sequence-files/IGVFFI1883DKHL/), [IGVFFI2147RQPO](/sequence-files/IGVFFI2147RQPO/), [IGVFFI4079EOFQ](/sequence-files/IGVFFI4079EOFQ/), [IGVFFI9286RTEL](/sequence-files/IGVFFI9286RTEL/), [IGVFFI2554UETT](/sequence-files/IGVFFI2554UETT/), [IGVFFI5208MYFF](/sequence-files/IGVFFI5208MYFF/), [IGVFFI6558JYNG](/sequence-files/IGVFFI6558JYNG/), [IGVFFI1014PBZO](/sequence-files/IGVFFI1014PBZO/), [IGVFFI2083YHGP](/sequence-files/IGVFFI2083YHGP/), [IGVFFI7883GSUO](/sequence-files/IGVFFI7883GSUO/), [IGVFFI1505XVNP](/sequence-files/IGVFFI1505XVNP/), [IGVFFI6204YQGV](/sequence-files/IGVFFI6204YQGV/), [IGVFFI5304CPBL](/sequence-files/IGVFFI5304CPBL/), [IGVFFI4462TSLM](/sequence-files/IGVFFI4462TSLM/), [IGVFFI9423VKHN](/sequence-files/IGVFFI9423VKHN/), [IGVFFI0848GDNO](/sequence-files/IGVFFI0848GDNO/), [IGVFFI8039TKUY](/sequence-files/IGVFFI8039TKUY/), [IGVFFI4161KMOW](/sequence-files/IGVFFI4161KMOW/), [IGVFFI5277ZRIE](/sequence-files/IGVFFI5277ZRIE/), [IGVFFI9929QQXR](/sequence-files/IGVFFI9929QQXR/), [IGVFFI5860XGDV](/sequence-files/IGVFFI5860XGDV/), [IGVFFI6213BLQG](/sequence-files/IGVFFI6213BLQG/), [IGVFFI7975NHEB](/sequence-files/IGVFFI7975NHEB/), [IGVFFI7734DPOO](/sequence-files/IGVFFI7734DPOO/), [IGVFFI2843ESSU](/sequence-files/IGVFFI2843ESSU/), [IGVFFI0422PHBM](/sequence-files/IGVFFI0422PHBM/), [IGVFFI7599ABTQ](/sequence-files/IGVFFI7599ABTQ/), [IGVFFI3689PCPR](/sequence-files/IGVFFI3689PCPR/) which do not have any `seqspecs`. Sequence files in a file set are expected to link to a sequence specification file.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_missing_seqspec",
"path": "/measurement-sets/IGVFDS5704ISFI/"
}
],
"WARNING": [
{
"category": "missing auxiliary set",
"detail": "Measurement set [IGVFDS5704ISFI](/measurement-sets/IGVFDS5704ISFI/) has no cell sorting `auxiliary_sets`. CRISPR-based measurement sets that utilize flow cytometry are expected to link to a cell sorting auxiliary set.",
"level": 40,
"level_name": "WARNING",
"name": "audit_missing_auxiliary_set",
"path": "/measurement-sets/IGVFDS5704ISFI/"
}
]
},
"award": {
"@id": "/awards/HG011972/",
"component": "functional characterization",
"contact_pi": {
"@id": "/users/6c75dbfa-635e-4a7a-8ec8-9e51e9c380a4/",
"title": "Jesse Engreitz"
},
"title": "Stanford Center for Connecting DNA Variants to Function and Phenotype"
},
"control_file_sets": [
{
"@id": "/measurement-sets/IGVFDS4869FXYY/",
"accession": "IGVFDS4869FXYY",
"aliases": [
"jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-Jurkat-PE2_Exp2_NegControl_AmpliconSequencing"
],
"status": "released"
}
],
"control_for": [],
"creation_timestamp": "2023-12-13T08:48:03.662986+00:00",
"donors": [
{
"@id": "/human-donors/IGVFDO1080XFGV/",
"accession": "IGVFDO1080XFGV",
"aliases": [
"igvf:donor_of_Jurkat"
],
"sex": "male",
"status": "released",
"taxa": "Homo sapiens"
}
],
"externally_hosted": false,
"file_set_type": "experimental data",
"files": [
{
"@id": "/sequence-files/IGVFFI5140USUU/",
"accession": "IGVFFI5140USUU",
"aliases": [
"jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep1-FFrep1-BinD-PCRrep7_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T09:33:10.795875+00:00",
"file_format": "fastq",
"file_size": 7238747,
"href": "/sequence-files/IGVFFI5140USUU/@@download/IGVFFI5140USUU.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/13e1ee1a-34c7-40f3-a8fa-970ea3537957/IGVFFI5140USUU.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230423pPPIFEnformerJurkat-Jurkat-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep1_BinD-PCRrep7_S43_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI6553BZFV/",
"accession": "IGVFFI6553BZFV",
"aliases": [
"jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep1-FFrep1-BinD-PCRrep6_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T09:32:29.175479+00:00",
"file_format": "fastq",
"file_size": 7248806,
"href": "/sequence-files/IGVFFI6553BZFV/@@download/IGVFFI6553BZFV.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/184904b6-deb5-4af8-a321-51bdd564665f/IGVFFI6553BZFV.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230423pPPIFEnformerJurkat-Jurkat-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep1_BinD-PCRrep6_S42_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI3684LSEW/",
"accession": "IGVFFI3684LSEW",
"aliases": [
"jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep1-FFrep1-BinD-PCRrep6_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T16:09:22.384963+00:00",
"file_format": "fastq",
"file_size": 2082384,
"href": "/sequence-files/IGVFFI3684LSEW/@@download/IGVFFI3684LSEW.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/6da4c3ed-248e-43fd-a815-00f025e9b649/IGVFFI3684LSEW.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230423pPPIFEnformerJurkat-Jurkat-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep1_BinD-PCRrep6_S42_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI8868GOPR/",
"accession": "IGVFFI8868GOPR",
"aliases": [
"jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep1-FFrep1-BinD-PCRrep1_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T09:19:39.680404+00:00",
"file_format": "fastq",
"file_size": 7028903,
"href": "/sequence-files/IGVFFI8868GOPR/@@download/IGVFFI8868GOPR.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/b7d8eec2-d473-412b-8014-020358b9d340/IGVFFI8868GOPR.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230423pPPIFEnformerJurkat-Jurkat-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep1_BinD-PCRrep1_S37_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI9334DIMV/",
"accession": "IGVFFI9334DIMV",
"aliases": [
"jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep1-FFrep1-BinD-PCRrep8_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T09:33:48.410718+00:00",
"file_format": "fastq",
"file_size": 7018495,
"href": "/sequence-files/IGVFFI9334DIMV/@@download/IGVFFI9334DIMV.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/f3dda4b0-1a5d-4f1f-a06f-6545d4c382c0/IGVFFI9334DIMV.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230423pPPIFEnformerJurkat-Jurkat-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep1_BinD-PCRrep8_S44_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI6306HZBJ/",
"accession": "IGVFFI6306HZBJ",
"aliases": [
"jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep1-FFrep1-BinD-PCRrep3_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T15:04:42.609960+00:00",
"file_format": "fastq",
"file_size": 1884895,
"href": "/sequence-files/IGVFFI6306HZBJ/@@download/IGVFFI6306HZBJ.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/e3e35a57-f7d9-46a4-95c4-d22a1dd861bc/IGVFFI6306HZBJ.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230423pPPIFEnformerJurkat-Jurkat-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep1_BinD-PCRrep3_S39_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI2399VDEC/",
"accession": "IGVFFI2399VDEC",
"aliases": [
"jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep1-FFrep1-BinD-PCRrep2_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T15:03:47.106055+00:00",
"file_format": "fastq",
"file_size": 1933227,
"href": "/sequence-files/IGVFFI2399VDEC/@@download/IGVFFI2399VDEC.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/6aa106e6-53e0-4c17-8f6b-db2c574557d1/IGVFFI2399VDEC.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230423pPPIFEnformerJurkat-Jurkat-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep1_BinD-PCRrep2_S38_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI5814CUST/",
"accession": "IGVFFI5814CUST",
"aliases": [
"jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep1-FFrep1-BinD-PCRrep4_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T10:35:47.971622+00:00",
"file_format": "fastq",
"file_size": 9704219,
"href": "/sequence-files/IGVFFI5814CUST/@@download/IGVFFI5814CUST.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/0889a37d-529c-4465-b269-c9feb5cc7755/IGVFFI5814CUST.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230423pPPIFEnformerJurkat-Jurkat-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep1_BinD-PCRrep4_S40_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI4370EHQW/",
"accession": "IGVFFI4370EHQW",
"aliases": [
"jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep1-FFrep1-BinD-PCRrep8_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T16:10:37.172307+00:00",
"file_format": "fastq",
"file_size": 2022281,
"href": "/sequence-files/IGVFFI4370EHQW/@@download/IGVFFI4370EHQW.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/9b91781f-012e-4a7b-adbe-e306a97ccd2c/IGVFFI4370EHQW.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230423pPPIFEnformerJurkat-Jurkat-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep1_BinD-PCRrep8_S44_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI4359TUGO/",
"accession": "IGVFFI4359TUGO",
"aliases": [
"jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep1-FFrep1-BinD-PCRrep10_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T15:09:08.101749+00:00",
"file_format": "fastq",
"file_size": 1982750,
"href": "/sequence-files/IGVFFI4359TUGO/@@download/IGVFFI4359TUGO.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/f5534a01-64e1-4670-be58-5796cb96b7be/IGVFFI4359TUGO.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230423pPPIFEnformerJurkat-Jurkat-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep1_BinD-PCRrep10_S46_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI3715ITHN/",
"accession": "IGVFFI3715ITHN",
"aliases": [
"jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep1-FFrep1-BinD-PCRrep2_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T09:29:39.232159+00:00",
"file_format": "fastq",
"file_size": 7059479,
"href": "/sequence-files/IGVFFI3715ITHN/@@download/IGVFFI3715ITHN.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/27e24814-25a6-49b3-8c06-18f55de7b933/IGVFFI3715ITHN.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230423pPPIFEnformerJurkat-Jurkat-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep1_BinD-PCRrep2_S38_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI3493CGNU/",
"accession": "IGVFFI3493CGNU",
"aliases": [
"jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep1-FFrep1-BinD-PCRrep11_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T10:40:28.666713+00:00",
"file_format": "fastq",
"file_size": 9200835,
"href": "/sequence-files/IGVFFI3493CGNU/@@download/IGVFFI3493CGNU.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/8a03bf3d-c4ce-49b7-9893-71931128a00f/IGVFFI3493CGNU.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230423pPPIFEnformerJurkat-Jurkat-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep1_BinD-PCRrep11_S47_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI0197BRAF/",
"accession": "IGVFFI0197BRAF",
"aliases": [
"jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep1-FFrep1-BinD-PCRrep12_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T15:10:22.444868+00:00",
"file_format": "fastq",
"file_size": 1803271,
"href": "/sequence-files/IGVFFI0197BRAF/@@download/IGVFFI0197BRAF.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/8091c45b-a4db-445d-afb3-4476291eedce/IGVFFI0197BRAF.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230423pPPIFEnformerJurkat-Jurkat-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep1_BinD-PCRrep12_S48_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI4324CZKV/",
"accession": "IGVFFI4324CZKV",
"aliases": [
"jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep1-FFrep1-BinD-PCRrep9_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T10:39:09.677717+00:00",
"file_format": "fastq",
"file_size": 9122842,
"href": "/sequence-files/IGVFFI4324CZKV/@@download/IGVFFI4324CZKV.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/32a989ce-d9fc-4610-8b49-8ae1ac33901c/IGVFFI4324CZKV.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230423pPPIFEnformerJurkat-Jurkat-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep1_BinD-PCRrep9_S45_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI5141WKEV/",
"accession": "IGVFFI5141WKEV",
"aliases": [
"jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep1-FFrep1-BinD-PCRrep10_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T09:35:04.014448+00:00",
"file_format": "fastq",
"file_size": 6726528,
"href": "/sequence-files/IGVFFI5141WKEV/@@download/IGVFFI5141WKEV.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/faa6b0cd-bf28-47cf-8e91-3efd3f20a7d1/IGVFFI5141WKEV.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230423pPPIFEnformerJurkat-Jurkat-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep1_BinD-PCRrep10_S46_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI7671ZFQL/",
"accession": "IGVFFI7671ZFQL",
"aliases": [
"jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep1-FFrep1-BinD-PCRrep12_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T10:41:14.609732+00:00",
"file_format": "fastq",
"file_size": 8833242,
"href": "/sequence-files/IGVFFI7671ZFQL/@@download/IGVFFI7671ZFQL.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/263e4255-1c3b-4091-8a67-e774887dcb4e/IGVFFI7671ZFQL.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230423pPPIFEnformerJurkat-Jurkat-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep1_BinD-PCRrep12_S48_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI0171OZDZ/",
"accession": "IGVFFI0171OZDZ",
"aliases": [
"jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep1-FFrep1-BinD-PCRrep9_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T15:08:30.767818+00:00",
"file_format": "fastq",
"file_size": 1870150,
"href": "/sequence-files/IGVFFI0171OZDZ/@@download/IGVFFI0171OZDZ.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/92b72c5f-86fd-486b-9d22-3e669173494f/IGVFFI0171OZDZ.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230423pPPIFEnformerJurkat-Jurkat-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep1_BinD-PCRrep9_S45_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI5212WAGE/",
"accession": "IGVFFI5212WAGE",
"aliases": [
"jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep1-FFrep1-BinD-PCRrep10_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T10:39:48.935893+00:00",
"file_format": "fastq",
"file_size": 9340573,
"href": "/sequence-files/IGVFFI5212WAGE/@@download/IGVFFI5212WAGE.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/e3fe5d85-ea17-47de-a294-a6a5dfccf49d/IGVFFI5212WAGE.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230423pPPIFEnformerJurkat-Jurkat-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep1_BinD-PCRrep10_S46_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI3194UDCC/",
"accession": "IGVFFI3194UDCC",
"aliases": [
"jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep1-FFrep1-BinD-PCRrep10_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T16:11:52.019214+00:00",
"file_format": "fastq",
"file_size": 1939920,
"href": "/sequence-files/IGVFFI3194UDCC/@@download/IGVFFI3194UDCC.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/be2195f5-2635-4d1f-af76-8d2b3b54f1f4/IGVFFI3194UDCC.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230423pPPIFEnformerJurkat-Jurkat-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep1_BinD-PCRrep10_S46_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI6637MEWE/",
"accession": "IGVFFI6637MEWE",
"aliases": [
"jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep1-FFrep1-BinD-PCRrep1_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T16:05:36.939403+00:00",
"file_format": "fastq",
"file_size": 2037328,
"href": "/sequence-files/IGVFFI6637MEWE/@@download/IGVFFI6637MEWE.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/66694fc7-abda-4417-826f-710e5f816280/IGVFFI6637MEWE.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230423pPPIFEnformerJurkat-Jurkat-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep1_BinD-PCRrep1_S37_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI1883DKHL/",
"accession": "IGVFFI1883DKHL",
"aliases": [
"jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep1-FFrep1-BinD-PCRrep7_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T10:37:46.855332+00:00",
"file_format": "fastq",
"file_size": 9976651,
"href": "/sequence-files/IGVFFI1883DKHL/@@download/IGVFFI1883DKHL.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/c30c140f-2f21-4d3f-8701-5edf158dd224/IGVFFI1883DKHL.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230423pPPIFEnformerJurkat-Jurkat-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep1_BinD-PCRrep7_S43_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI2147RQPO/",
"accession": "IGVFFI2147RQPO",
"aliases": [
"jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep1-FFrep1-BinD-PCRrep11_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T16:12:32.797327+00:00",
"file_format": "fastq",
"file_size": 1921285,
"href": "/sequence-files/IGVFFI2147RQPO/@@download/IGVFFI2147RQPO.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/0502212b-82cd-46aa-b2f1-35a69c9658ff/IGVFFI2147RQPO.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230423pPPIFEnformerJurkat-Jurkat-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep1_BinD-PCRrep11_S47_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI4079EOFQ/",
"accession": "IGVFFI4079EOFQ",
"aliases": [
"jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep1-FFrep1-BinD-PCRrep12_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T09:36:19.216384+00:00",
"file_format": "fastq",
"file_size": 6432135,
"href": "/sequence-files/IGVFFI4079EOFQ/@@download/IGVFFI4079EOFQ.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/7800753c-251b-4abf-b568-46d6bc5c7cef/IGVFFI4079EOFQ.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230423pPPIFEnformerJurkat-Jurkat-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep1_BinD-PCRrep12_S48_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI9286RTEL/",
"accession": "IGVFFI9286RTEL",
"aliases": [
"jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep1-FFrep1-BinD-PCRrep8_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T15:07:53.631005+00:00",
"file_format": "fastq",
"file_size": 1912061,
"href": "/sequence-files/IGVFFI9286RTEL/@@download/IGVFFI9286RTEL.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/0270b153-ee80-45e0-9178-10c3a0262da2/IGVFFI9286RTEL.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230423pPPIFEnformerJurkat-Jurkat-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep1_BinD-PCRrep8_S44_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI2554UETT/",
"accession": "IGVFFI2554UETT",
"aliases": [
"jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep1-FFrep1-BinD-PCRrep6_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T10:37:07.093034+00:00",
"file_format": "fastq",
"file_size": 10016698,
"href": "/sequence-files/IGVFFI2554UETT/@@download/IGVFFI2554UETT.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/c1aefb67-a52b-4d6a-96b5-b9bc03ce75c5/IGVFFI2554UETT.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230423pPPIFEnformerJurkat-Jurkat-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep1_BinD-PCRrep6_S42_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI5208MYFF/",
"accession": "IGVFFI5208MYFF",
"aliases": [
"jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep1-FFrep1-BinD-PCRrep5_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T10:36:27.634903+00:00",
"file_format": "fastq",
"file_size": 9979621,
"href": "/sequence-files/IGVFFI5208MYFF/@@download/IGVFFI5208MYFF.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/a7beb1d5-86e6-4907-9bef-c228ad643ff4/IGVFFI5208MYFF.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230423pPPIFEnformerJurkat-Jurkat-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep1_BinD-PCRrep5_S41_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI6558JYNG/",
"accession": "IGVFFI6558JYNG",
"aliases": [
"jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep1-FFrep1-BinD-PCRrep1_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T15:02:51.425198+00:00",
"file_format": "fastq",
"file_size": 1975992,
"href": "/sequence-files/IGVFFI6558JYNG/@@download/IGVFFI6558JYNG.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/97730124-66d1-4616-b376-af18c90907ff/IGVFFI6558JYNG.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230423pPPIFEnformerJurkat-Jurkat-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep1_BinD-PCRrep1_S37_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI1014PBZO/",
"accession": "IGVFFI1014PBZO",
"aliases": [
"jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep1-FFrep1-BinD-PCRrep11_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T15:09:45.213211+00:00",
"file_format": "fastq",
"file_size": 1897993,
"href": "/sequence-files/IGVFFI1014PBZO/@@download/IGVFFI1014PBZO.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/62914416-ad6b-462d-8d6b-11d9a4301989/IGVFFI1014PBZO.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230423pPPIFEnformerJurkat-Jurkat-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep1_BinD-PCRrep11_S47_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI2083YHGP/",
"accession": "IGVFFI2083YHGP",
"aliases": [
"jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep1-FFrep1-BinD-PCRrep5_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T16:08:44.869417+00:00",
"file_format": "fastq",
"file_size": 2130357,
"href": "/sequence-files/IGVFFI2083YHGP/@@download/IGVFFI2083YHGP.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/c23aa84b-83c4-43d0-9d97-29c7f10a228e/IGVFFI2083YHGP.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230423pPPIFEnformerJurkat-Jurkat-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep1_BinD-PCRrep5_S41_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI7883GSUO/",
"accession": "IGVFFI7883GSUO",
"aliases": [
"jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep1-FFrep1-BinD-PCRrep2_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T10:34:01.825751+00:00",
"file_format": "fastq",
"file_size": 9784753,
"href": "/sequence-files/IGVFFI7883GSUO/@@download/IGVFFI7883GSUO.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/8abc95e8-1d37-44c7-a892-d7c01c8d42af/IGVFFI7883GSUO.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230423pPPIFEnformerJurkat-Jurkat-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep1_BinD-PCRrep2_S38_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI1505XVNP/",
"accession": "IGVFFI1505XVNP",
"aliases": [
"jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep1-FFrep1-BinD-PCRrep2_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T16:06:32.820172+00:00",
"file_format": "fastq",
"file_size": 2038713,
"href": "/sequence-files/IGVFFI1505XVNP/@@download/IGVFFI1505XVNP.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/f71dc20e-290c-4705-a99f-2219d9f3e47d/IGVFFI1505XVNP.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230423pPPIFEnformerJurkat-Jurkat-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep1_BinD-PCRrep2_S38_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI6204YQGV/",
"accession": "IGVFFI6204YQGV",
"aliases": [
"jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep1-FFrep1-BinD-PCRrep8_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T10:38:26.767946+00:00",
"file_format": "fastq",
"file_size": 9705973,
"href": "/sequence-files/IGVFFI6204YQGV/@@download/IGVFFI6204YQGV.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/216714c0-0a49-49e4-8847-66c52ad59a96/IGVFFI6204YQGV.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230423pPPIFEnformerJurkat-Jurkat-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep1_BinD-PCRrep8_S44_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI5304CPBL/",
"accession": "IGVFFI5304CPBL",
"aliases": [
"jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep1-FFrep1-BinD-PCRrep6_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T15:06:36.160014+00:00",
"file_format": "fastq",
"file_size": 1963064,
"href": "/sequence-files/IGVFFI5304CPBL/@@download/IGVFFI5304CPBL.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/1db1c786-1c69-4a09-89fa-a15e6dd223ad/IGVFFI5304CPBL.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230423pPPIFEnformerJurkat-Jurkat-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep1_BinD-PCRrep6_S42_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI4462TSLM/",
"accession": "IGVFFI4462TSLM",
"aliases": [
"jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep1-FFrep1-BinD-PCRrep7_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T15:07:13.415923+00:00",
"file_format": "fastq",
"file_size": 2008714,
"href": "/sequence-files/IGVFFI4462TSLM/@@download/IGVFFI4462TSLM.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/66462209-ad5a-46a2-869b-539c70770f6a/IGVFFI4462TSLM.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230423pPPIFEnformerJurkat-Jurkat-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep1_BinD-PCRrep7_S43_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI9423VKHN/",
"accession": "IGVFFI9423VKHN",
"aliases": [
"jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep1-FFrep1-BinD-PCRrep9_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T16:11:14.430105+00:00",
"file_format": "fastq",
"file_size": 1922041,
"href": "/sequence-files/IGVFFI9423VKHN/@@download/IGVFFI9423VKHN.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/2dd71bc1-c4d4-49c8-aa67-a77af222fa17/IGVFFI9423VKHN.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230423pPPIFEnformerJurkat-Jurkat-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep1_BinD-PCRrep9_S45_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI0848GDNO/",
"accession": "IGVFFI0848GDNO",
"aliases": [
"jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep1-FFrep1-BinD-PCRrep3_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T10:35:08.266721+00:00",
"file_format": "fastq",
"file_size": 9479995,
"href": "/sequence-files/IGVFFI0848GDNO/@@download/IGVFFI0848GDNO.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/58757017-6822-4131-b4d3-0629abc327e0/IGVFFI0848GDNO.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230423pPPIFEnformerJurkat-Jurkat-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep1_BinD-PCRrep3_S39_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI8039TKUY/",
"accession": "IGVFFI8039TKUY",
"aliases": [
"jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep1-FFrep1-BinD-PCRrep12_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T16:13:10.060187+00:00",
"file_format": "fastq",
"file_size": 1878782,
"href": "/sequence-files/IGVFFI8039TKUY/@@download/IGVFFI8039TKUY.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/1bbf0265-5f26-43a9-b477-58c94a24bb7a/IGVFFI8039TKUY.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230423pPPIFEnformerJurkat-Jurkat-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep1_BinD-PCRrep12_S48_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI4161KMOW/",
"accession": "IGVFFI4161KMOW",
"aliases": [
"jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep1-FFrep1-BinD-PCRrep11_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T09:35:41.896473+00:00",
"file_format": "fastq",
"file_size": 6649018,
"href": "/sequence-files/IGVFFI4161KMOW/@@download/IGVFFI4161KMOW.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/02891833-f8f1-402c-8532-cfa97939e7d0/IGVFFI4161KMOW.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230423pPPIFEnformerJurkat-Jurkat-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep1_BinD-PCRrep11_S47_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI5277ZRIE/",
"accession": "IGVFFI5277ZRIE",
"aliases": [
"jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep1-FFrep1-BinD-PCRrep4_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T09:31:13.686021+00:00",
"file_format": "fastq",
"file_size": 7013591,
"href": "/sequence-files/IGVFFI5277ZRIE/@@download/IGVFFI5277ZRIE.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/ff483d33-d3f1-4dcf-9964-3dde47dfbc31/IGVFFI5277ZRIE.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230423pPPIFEnformerJurkat-Jurkat-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep1_BinD-PCRrep4_S40_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI9929QQXR/",
"accession": "IGVFFI9929QQXR",
"aliases": [
"jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep1-FFrep1-BinD-PCRrep9_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T09:34:26.158638+00:00",
"file_format": "fastq",
"file_size": 6618349,
"href": "/sequence-files/IGVFFI9929QQXR/@@download/IGVFFI9929QQXR.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/ca0c9759-45ca-430e-932a-4841e9af445d/IGVFFI9929QQXR.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230423pPPIFEnformerJurkat-Jurkat-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep1_BinD-PCRrep9_S45_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI5860XGDV/",
"accession": "IGVFFI5860XGDV",
"aliases": [
"jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep1-FFrep1-BinD-PCRrep3_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T09:30:35.900395+00:00",
"file_format": "fastq",
"file_size": 6895448,
"href": "/sequence-files/IGVFFI5860XGDV/@@download/IGVFFI5860XGDV.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/45258022-5b26-4e21-b24f-3a555e9df6bc/IGVFFI5860XGDV.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230423pPPIFEnformerJurkat-Jurkat-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep1_BinD-PCRrep3_S39_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI6213BLQG/",
"accession": "IGVFFI6213BLQG",
"aliases": [
"jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep1-FFrep1-BinD-PCRrep5_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T15:05:57.356941+00:00",
"file_format": "fastq",
"file_size": 2171865,
"href": "/sequence-files/IGVFFI6213BLQG/@@download/IGVFFI6213BLQG.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/446e8377-6873-462f-98e9-fba7d5287863/IGVFFI6213BLQG.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230423pPPIFEnformerJurkat-Jurkat-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep1_BinD-PCRrep5_S41_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI7975NHEB/",
"accession": "IGVFFI7975NHEB",
"aliases": [
"jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep1-FFrep1-BinD-PCRrep4_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T15:05:19.936664+00:00",
"file_format": "fastq",
"file_size": 1912478,
"href": "/sequence-files/IGVFFI7975NHEB/@@download/IGVFFI7975NHEB.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/135d4311-e5ce-4471-8e59-e7ea029bfc3f/IGVFFI7975NHEB.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230423pPPIFEnformerJurkat-Jurkat-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep1_BinD-PCRrep4_S40_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI7734DPOO/",
"accession": "IGVFFI7734DPOO",
"aliases": [
"jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep1-FFrep1-BinD-PCRrep3_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T16:07:30.274973+00:00",
"file_format": "fastq",
"file_size": 1989670,
"href": "/sequence-files/IGVFFI7734DPOO/@@download/IGVFFI7734DPOO.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/4a71742a-b7c0-4648-9e92-0663a325e0cd/IGVFFI7734DPOO.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230423pPPIFEnformerJurkat-Jurkat-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep1_BinD-PCRrep3_S39_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI2843ESSU/",
"accession": "IGVFFI2843ESSU",
"aliases": [
"jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep1-FFrep1-BinD-PCRrep7_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T16:09:59.624216+00:00",
"file_format": "fastq",
"file_size": 2091813,
"href": "/sequence-files/IGVFFI2843ESSU/@@download/IGVFFI2843ESSU.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/978f88ee-14c8-40b1-8682-946125844015/IGVFFI2843ESSU.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230423pPPIFEnformerJurkat-Jurkat-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep1_BinD-PCRrep7_S43_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI0422PHBM/",
"accession": "IGVFFI0422PHBM",
"aliases": [
"jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep1-FFrep1-BinD-PCRrep4_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T16:08:07.585519+00:00",
"file_format": "fastq",
"file_size": 2020922,
"href": "/sequence-files/IGVFFI0422PHBM/@@download/IGVFFI0422PHBM.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/d0052d08-0d72-46fb-ab13-41fac40428f7/IGVFFI0422PHBM.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230423pPPIFEnformerJurkat-Jurkat-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep1_BinD-PCRrep4_S40_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI7599ABTQ/",
"accession": "IGVFFI7599ABTQ",
"aliases": [
"jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep1-FFrep1-BinD-PCRrep1_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T10:32:59.673922+00:00",
"file_format": "fastq",
"file_size": 9712418,
"href": "/sequence-files/IGVFFI7599ABTQ/@@download/IGVFFI7599ABTQ.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/385fbcd8-9bbe-45e2-bd73-c17fcce054e3/IGVFFI7599ABTQ.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230423pPPIFEnformerJurkat-Jurkat-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep1_BinD-PCRrep1_S37_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI3689PCPR/",
"accession": "IGVFFI3689PCPR",
"aliases": [
"jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep1-FFrep1-BinD-PCRrep5_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T09:31:51.392873+00:00",
"file_format": "fastq",
"file_size": 7267108,
"href": "/sequence-files/IGVFFI3689PCPR/@@download/IGVFFI3689PCPR.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/361351ba-cf93-4730-b940-c0ade0ff3bde/IGVFFI3689PCPR.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230423pPPIFEnformerJurkat-Jurkat-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep1_BinD-PCRrep5_S41_R1_001.fastq.gz",
"upload_status": "validated"
}
],
"input_for": [
"/analysis-sets/IGVFDS6299IJHG/"
],
"lab": {
"@id": "/labs/jesse-engreitz/",
"title": "Jesse Engreitz, Stanford"
},
"notes": "The readout 2e41e624-f6c7-4f0c-a07e-bc36cefdca39 was removed from this measurement set. This measurement set previously used Variant FlowFISH as a preferred_assay_title, but this enum is now removed. So it has been defaulted to Variant-EFFECTS.",
"preferred_assay_title": "Variant-EFFECTS",
"protocols": [
"https://www.protocols.io/view/flowfish-with-primeflow-36wgq3q4olk5/v1"
],
"release_timestamp": "2023-12-20T23:08:43.483649+00:00",
"samples": [
{
"@id": "/in-vitro-systems/IGVFSM9226UZTE/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM9226UZTE",
"aliases": [
"jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep1-FFrep1-BinD"
],
"classifications": [
"cell line"
],
"construct_library_sets": [
{
"@id": "/construct-library-sets/IGVFDS2385DHZO/",
"accession": "IGVFDS2385DHZO",
"file_set_type": "guide library",
"status": "in progress",
"summary": "guide (sgRNA) library targeting sequence variants in a genomic locus"
}
],
"modifications": [
{
"@id": "/crispr-modifications/fc6bc0b3-a064-47d0-b95d-a9af14bb1624/",
"modality": "prime editing",
"status": "released"
}
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0002796/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"aliases": [
"igvf:Jurkat"
],
"status": "released",
"summary": "Jurkat",
"term_name": "Jurkat"
}
],
"status": "released",
"summary": "Jurkat cell line, male, Homo sapiens (sorting details: FACS bin for 76-100% expression of PPIF) modified with CRISPR prime editing Sp-nCas9-M-MLV RT (PE2), transfected with a guide library",
"taxa": "Homo sapiens"
}
],
"schema_version": "23",
"status": "released",
"submitted_by": {
"@id": "/users/f9e7cd82-a407-4a20-89ee-f4dc668b0cbe/",
"title": "Michael Montgomery"
},
"submitted_files_timestamp": "2023-12-13T09:19:39.680404+00:00",
"summary": "CRISPR prime editing Variant-EFFECTS integrating a guide (sgRNA) library targeting sequence variants in a genomic locus",
"targeted_genes": [
{
"@id": "/genes/ENSG00000108179/",
"geneid": "ENSG00000108179",
"name": "peptidylprolyl isomerase F",
"status": "released",
"symbol": "PPIF",
"synonyms": [
"rotamase F",
"CYP3",
"cyclophilin F",
"mitochondrial cyclophilin",
"peptidyl-prolyl cis-trans isomerase, mitochondrial",
"CypD",
"Cyp-D",
"cyclophilin 3",
"cyclophilin D",
"CyP-M",
"peptidyl-prolyl cis-trans isomerase F, mitochondrial",
"PPIase F"
]
}
],
"uuid": "e6050ebf-9c50-4aad-9f6e-bdfb12be236f"
}