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MeasurementSet
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IGVFDS5558GPUT
IGVFDS5558GPUT
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File Set Type
experimental data
Summary
single-nucleus RNA sequencing assay (10x multiome)
Assay Term
single-nucleus RNA sequencing assay
Sample Summaries
multiplexed sample: Homo sapiens (male, 79 years) posterior cingulate gyrus tissue; Homo sapiens (male, 80 years) posterior cingulate gyrus tissue associated with Parkinson's disease, cerebral amyloid angiopathy, mild cognitive impairment; ... and 8 more samples
Protocols
https://www.protocols.io/view/chromium-next-gem-single-cell-multiome-atac-gene-e-d5k784zn
Aliases
igvf:corces_measurementSet_X050_G4_RNA
Attribution
Ryan Corces, Gladstone Institute UCSF
(
HG012076
—
Ansuman Satpathy
)
Sequencing Results (Illumina)
16 items
1
2
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Read Names
Associated seqspec Files
Sequence Specification Document
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI0983LOFY
fastq
reads
R1
1
Read 1
Illumina NovaSeq X
2257GYLT3
5
1.3 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI1643NDEI
fastq
reads
I1
1
Illumina NovaSeq X
2257GYLT3
8
401 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI2039GZEO
fastq
reads
I1
1
Illumina NovaSeq X
2257GYLT3
6
417 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI2098YMAL
fastq
reads
R2
1
Read 2
Illumina NovaSeq X
2257GYLT3
8
2.5 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI3644ZZUK
fastq
reads
I1
1
Illumina NovaSeq X
2257GYLT3
5
420 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI5492SAOT
fastq
reads
R1
1
Read 1
Illumina NovaSeq X
2257GYLT3
6
1.2 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI6243XNQH
fastq
reads
I1
1
Illumina NovaSeq X
2257GYLT3
7
411 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI6244HQTT
fastq
reads
I2
1
Illumina NovaSeq X
2257GYLT3
8
347 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI6341TLTR
fastq
reads
I2
1
Illumina NovaSeq X
2257GYLT3
7
356 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI7314CVEH
fastq
reads
I2
1
Illumina NovaSeq X
2257GYLT3
5
364 MB
Ryan Corces, Gladstone Institute UCSF
validated
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Associated Construct Library Sets
Summary
IGVFSM7568QAEB
MultiplexedSample
cerebellar cortex
,
middle temporal gyrus
,
posterior cingulate gyrus
,
putamen
,
substantia nigra
Alzheimer disease
,
cerebral amyloid angiopathy
,
mild cognitive impairment
,
Parkinson's disease
multiplexed sample: Homo sapiens (male, 79 years) posterior cingulate gyrus tissue; Homo sapiens (male, 80 years) posterior cingulate gyrus tissue associated with Parkinson's disease, cerebral amyloid angiopathy, mild cognitive impairment; ... and 8 more samples
Donors
10 items
Accession
Aliases
Sex
Taxa
IGVFDO0967LMSM
igvf:corces_donor_BANN1973
male
Homo sapiens
IGVFDO2559GIIZ
igvf:corces_donor_BANN2103
male
Homo sapiens
IGVFDO4825ZGIS
igvf:corces_donor_BANN2057
male
Homo sapiens
IGVFDO5205IAEO
igvf:corces_donor_BANN1632
male
Homo sapiens
IGVFDO6000JDZW
igvf:corces_donor_BANN1858
male
Homo sapiens
IGVFDO6380POHE
igvf:corces_donor_BANN0124
male
Homo sapiens
IGVFDO7186XJLL
igvf:corces_donor_BANN1639
male
Homo sapiens
IGVFDO7227BIXW
igvf:corces_donor_BANN1614
male
Homo sapiens
IGVFDO7387JZDV
igvf:corces_donor_BANN1349
female
Homo sapiens
IGVFDO9236YUAT
igvf:corces_donor_BANN0227
male
Homo sapiens
Related Multiome Datasets
1 item
Accession
Type
Summary
Aliases
Lab
IGVFDS1897GFNY
MeasurementSet
single-nucleus ATAC-seq (10x multiome)
igvf:corces_measurementSet_X050_G4_ATAC
Ryan Corces, Gladstone Institute UCSF