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IGVFDS5549HQMS

released
File Set Type
experimental data
Summary
single-cell ATAC-seq (SHARE-seq)
Assay Term
single-cell ATAC-seq
Sample Summaries
  • Homo sapiens induced pluripotent stem pooled differentiated cell specimen induced to endodermal cell for 2 days (cellular sub pool: SS-PKR 179)
Protocols
Aliases
buenrostro-bernstein:scATAC Lib 439
Attribution
Jason Buenrostro, Broad

Sequencing Results (Illumina)

36 items
Read Names
fastq
reads
R2
1017
Read 2
22773CLT3
847 MB
Jason Buenrostro, Broad
validated
fastq
reads
I1
1017
Barcode index
22773CLT3
747 MB
Jason Buenrostro, Broad
validated
fastq
reads
R1
1059
Read 1
22773CLT3
1.7 GB
Jason Buenrostro, Broad
validated
fastq
reads
R1
8563
Read 1
22LMVNLT4
1.3 GB
Jason Buenrostro, Broad
validated
fastq
reads
R1
8755
Read 1
22LMVNLT4
1.3 GB
Jason Buenrostro, Broad
validated
fastq
reads
R1
1017
Read 1
22773CLT3
1.8 GB
Jason Buenrostro, Broad
validated
fastq
reads
R2
9139
Read 2
22LMVNLT4
1.2 GB
Jason Buenrostro, Broad
validated
fastq
reads
R2
9043
Read 2
22LMVNLT4
1.3 GB
Jason Buenrostro, Broad
validated
fastq
reads
R2
975
Read 2
22773CLT3
841 MB
Jason Buenrostro, Broad
validated
fastq
reads
R1
975
Read 1
22773CLT3
1.8 GB
Jason Buenrostro, Broad
validated

Samples

1 item
Accession
Type
Sample Terms
Associated Construct Library Sets
Summary
InVitroSystem
Homo sapiens induced pluripotent stem pooled differentiated cell specimen induced to endodermal cell for 2 days (cellular sub pool: SS-PKR 179)

Donors

100 items
Aliases
  • buenrostro-bernstein:Donor 1860
unspecified
Homo sapiens
  • buenrostro-bernstein:Donor 1850
unspecified
Homo sapiens
  • buenrostro-bernstein:Donor 1816
unspecified
Homo sapiens
  • buenrostro-bernstein:Donor 1862
unspecified
Homo sapiens
  • buenrostro-bernstein:Donor 1834
unspecified
Homo sapiens
  • buenrostro-bernstein:Donor 1876
unspecified
Homo sapiens
  • buenrostro-bernstein:Donor 1828
unspecified
Homo sapiens
  • buenrostro-bernstein:Donor 1892
unspecified
Homo sapiens
  • buenrostro-bernstein:Donor 1745
unspecified
Homo sapiens
  • buenrostro-bernstein:Donor 1867
unspecified
Homo sapiens

Related Multiome Datasets

1 item
Accession
Type
Summary
Aliases
Lab
MeasurementSet
single-cell RNA sequencing assay (SHARE-seq)
  • buenrostro-bernstein:scRNA Lib 430
Jason Buenrostro, Broad