IGVFDS5549HQMS

1{
2    "@context": "/terms/",
3    "@id": "/measurement-sets/IGVFDS5549HQMS/",
4    "@type": [
5        "MeasurementSet",
6        "FileSet",
7        "Item"
8    ],
9    "accession": "IGVFDS5549HQMS",
10    "aliases": [
11        "buenrostro-bernstein:scATAC Lib 439"
12    ],
13    "assay_term": {
14        "@id": "/assay-terms/OBI_0002764/",
15        "assay_slims": [
16            "chromatin accessibility"
17        ],
18        "status": "released",
19        "term_name": "single-cell ATAC-seq"
20    },
21    "audit": {
22        "INTERNAL_ACTION": [
23            {
24                "category": "missing publication",
25                "detail": "In vitro system [IGVFSM0278QWHE](/in-vitro-systems/IGVFSM0278QWHE/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
26                "level": 30,
27                "level_name": "INTERNAL_ACTION",
28                "name": "audit_sample_missing_publication",
29                "path": "/in-vitro-systems/IGVFSM0278QWHE/"
30            },
31            {
32                "category": "missing publication",
33                "detail": "Measurement set [IGVFDS5549HQMS](/measurement-sets/IGVFDS5549HQMS/) has no `publications`. Released and archived file sets are expected to be associated with a publication.",
34                "level": 30,
35                "level_name": "INTERNAL_ACTION",
36                "name": "audit_file_set_missing_publication",
37                "path": "/measurement-sets/IGVFDS5549HQMS/"
38            },
39            {
40                "category": "mismatched status",
41                "detail": "Released measurement set [IGVFDS5549HQMS](/measurement-sets/IGVFDS5549HQMS/) has in progress subobject tabular file [IGVFFI5875LDWP](/tabular-files/IGVFFI5875LDWP/).",
42                "level": 30,
43                "level_name": "INTERNAL_ACTION",
44                "name": "audit_item_status",
45                "path": "/measurement-sets/IGVFDS5549HQMS/"
46            },
47            {
48                "category": "mismatched status",
49                "detail": "Released measurement set [IGVFDS5549HQMS](/measurement-sets/IGVFDS5549HQMS/) has in progress subobject tabular file [IGVFFI0400MBIM](/tabular-files/IGVFFI0400MBIM/).",
50                "level": 30,
51                "level_name": "INTERNAL_ACTION",
52                "name": "audit_item_status",
53                "path": "/measurement-sets/IGVFDS5549HQMS/"
54            }
55        ],
56        "NOT_COMPLIANT": [
57            {
58                "category": "missing strand specificity",
59                "detail": "Measurement set [IGVFDS5549HQMS](/measurement-sets/IGVFDS5549HQMS/) is missing required `strand_specificity`. Single-cell assays are expected to specify strand specificity.",
60                "level": 50,
61                "level_name": "NOT_COMPLIANT",
62                "name": "audit_missing_strand_specificity",
63                "path": "/measurement-sets/IGVFDS5549HQMS/"
64            }
65        ]
66    },
67    "award": {
68        "@id": "/awards/HG011986/",
69        "component": "mapping",
70        "contact_pi": {
71            "@id": "/users/33c6eb70-e143-4f77-9661-4b3905737daa/",
72            "title": "Jason Buenrostro"
73        },
74        "title": "A foundational resource of functional elements, TF footprints and gene regulatory interactions"
75    },
76    "control_for": [],
77    "controlled_access": true,
78    "creation_timestamp": "2024-08-20T14:57:45.960434+00:00",
79    "data_use_limitation_summaries": [
80        "GRU"
81    ],
82    "donors": [
83        {
84            "@id": "/human-donors/IGVFDO4222QOSB/",
85            "accession": "IGVFDO4222QOSB",
86            "aliases": [
87                "buenrostro-bernstein:Donor 1827"
88            ],
89            "sex": "unspecified",
90            "status": "released",
91            "taxa": "Homo sapiens"
92        },
93        {
94            "@id": "/human-donors/IGVFDO1535CIEE/",
95            "accession": "IGVFDO1535CIEE",
96            "aliases": [
97                "buenrostro-bernstein:Donor 1793"
98            ],
99            "sex": "unspecified",
100            "status": "released",
101            "taxa": "Homo sapiens"
102        },
103        {
104            "@id": "/human-donors/IGVFDO2298PENP/",
105            "accession": "IGVFDO2298PENP",
106            "aliases": [
107                "buenrostro-bernstein:Donor 1879"
108            ],
109            "sex": "unspecified",
110            "status": "released",
111            "taxa": "Homo sapiens"
112        },
113        {
114            "@id": "/human-donors/IGVFDO7983CLUG/",
115            "accession": "IGVFDO7983CLUG",
116            "aliases": [
117                "buenrostro-bernstein:Donor 1852"
118            ],
119            "sex": "unspecified",
120            "status": "released",
121            "taxa": "Homo sapiens"
122        },
123        {
124            "@id": "/human-donors/IGVFDO4197GLLD/",
125            "accession": "IGVFDO4197GLLD",
126            "aliases": [
127                "buenrostro-bernstein:Donor 1866"
128            ],
129            "sex": "unspecified",
130            "status": "released",
131            "taxa": "Homo sapiens"
132        },
133        {
134            "@id": "/human-donors/IGVFDO5748WCDL/",
135            "accession": "IGVFDO5748WCDL",
136            "aliases": [
137                "buenrostro-bernstein:Donor 1889"
138            ],
139            "sex": "unspecified",
140            "status": "released",
141            "taxa": "Homo sapiens"
142        },
143        {
144            "@id": "/human-donors/IGVFDO2372UULO/",
145            "accession": "IGVFDO2372UULO",
146            "aliases": [
147                "buenrostro-bernstein:Donor 1840"
148            ],
149            "sex": "unspecified",
150            "status": "released",
151            "taxa": "Homo sapiens"
152        },
153        {
154            "@id": "/human-donors/IGVFDO0597VIVH/",
155            "accession": "IGVFDO0597VIVH",
156            "aliases": [
157                "buenrostro-bernstein:Donor 1874"
158            ],
159            "sex": "unspecified",
160            "status": "released",
161            "taxa": "Homo sapiens"
162        },
163        {
164            "@id": "/human-donors/IGVFDO4689NFPC/",
165            "accession": "IGVFDO4689NFPC",
166            "aliases": [
167                "buenrostro-bernstein:Donor 1770"
168            ],
169            "sex": "unspecified",
170            "status": "released",
171            "taxa": "Homo sapiens"
172        },
173        {
174            "@id": "/human-donors/IGVFDO0436YOXD/",
175            "accession": "IGVFDO0436YOXD",
176            "aliases": [
177                "buenrostro-bernstein:Donor 1745"
178            ],
179            "sex": "unspecified",
180            "status": "released",
181            "taxa": "Homo sapiens"
182        },
183        {
184            "@id": "/human-donors/IGVFDO8404YTWG/",
185            "accession": "IGVFDO8404YTWG",
186            "aliases": [
187                "buenrostro-bernstein:Donor 1865"
188            ],
189            "sex": "unspecified",
190            "status": "released",
191            "taxa": "Homo sapiens"
192        },
193        {
194            "@id": "/human-donors/IGVFDO9402EPTG/",
195            "accession": "IGVFDO9402EPTG",
196            "aliases": [
197                "buenrostro-bernstein:Donor 1829"
198            ],
199            "sex": "unspecified",
200            "status": "released",
201            "taxa": "Homo sapiens"
202        },
203        {
204            "@id": "/human-donors/IGVFDO0233FJJF/",
205            "accession": "IGVFDO0233FJJF",
206            "aliases": [
207                "buenrostro-bernstein:Donor 1834"
208            ],
209            "sex": "unspecified",
210            "status": "released",
211            "taxa": "Homo sapiens"
212        },
213        {
214            "@id": "/human-donors/IGVFDO3469EFJR/",
215            "accession": "IGVFDO3469EFJR",
216            "aliases": [
217                "buenrostro-bernstein:Donor 1741"
218            ],
219            "sex": "unspecified",
220            "status": "released",
221            "taxa": "Homo sapiens"
222        },
223        {
224            "@id": "/human-donors/IGVFDO6626TJEC/",
225            "accession": "IGVFDO6626TJEC",
226            "aliases": [
227                "buenrostro-bernstein:Donor 1888"
228            ],
229            "sex": "unspecified",
230            "status": "released",
231            "taxa": "Homo sapiens"
232        },
233        {
234            "@id": "/human-donors/IGVFDO3364ORGK/",
235            "accession": "IGVFDO3364ORGK",
236            "aliases": [
237                "buenrostro-bernstein:Donor 1897"
238            ],
239            "sex": "unspecified",
240            "status": "released",
241            "taxa": "Homo sapiens"
242        },
243        {
244            "@id": "/human-donors/IGVFDO6694QTLS/",
245            "accession": "IGVFDO6694QTLS",
246            "aliases": [
247                "buenrostro-bernstein:Donor 1826"
248            ],
249            "sex": "unspecified",
250            "status": "released",
251            "taxa": "Homo sapiens"
252        },
253        {
254            "@id": "/human-donors/IGVFDO6675DJLJ/",
255            "accession": "IGVFDO6675DJLJ",
256            "aliases": [
257                "buenrostro-bernstein:Donor 1837"
258            ],
259            "sex": "unspecified",
260            "status": "released",
261            "taxa": "Homo sapiens"
262        },
263        {
264            "@id": "/human-donors/IGVFDO2796VIEN/",
265            "accession": "IGVFDO2796VIEN",
266            "aliases": [
267                "buenrostro-bernstein:Donor 1884"
268            ],
269            "sex": "unspecified",
270            "status": "released",
271            "taxa": "Homo sapiens"
272        },
273        {
274            "@id": "/human-donors/IGVFDO0166JLWT/",
275            "accession": "IGVFDO0166JLWT",
276            "aliases": [
277                "buenrostro-bernstein:Donor 1816"
278            ],
279            "sex": "unspecified",
280            "status": "released",
281            "taxa": "Homo sapiens"
282        },
283        {
284            "@id": "/human-donors/IGVFDO7476FWEA/",
285            "accession": "IGVFDO7476FWEA",
286            "aliases": [
287                "buenrostro-bernstein:Donor 1851"
288            ],
289            "sex": "unspecified",
290            "status": "released",
291            "taxa": "Homo sapiens"
292        },
293        {
294            "@id": "/human-donors/IGVFDO5895ABMM/",
295            "accession": "IGVFDO5895ABMM",
296            "aliases": [
297                "buenrostro-bernstein:Donor 1824"
298            ],
299            "sex": "unspecified",
300            "status": "released",
301            "taxa": "Homo sapiens"
302        },
303        {
304            "@id": "/human-donors/IGVFDO0143YSWQ/",
305            "accession": "IGVFDO0143YSWQ",
306            "aliases": [
307                "buenrostro-bernstein:Donor 1860"
308            ],
309            "sex": "unspecified",
310            "status": "released",
311            "taxa": "Homo sapiens"
312        },
313        {
314            "@id": "/human-donors/IGVFDO6969ZGNB/",
315            "accession": "IGVFDO6969ZGNB",
316            "aliases": [
317                "buenrostro-bernstein:Donor 1844"
318            ],
319            "sex": "unspecified",
320            "status": "released",
321            "taxa": "Homo sapiens"
322        },
323        {
324            "@id": "/human-donors/IGVFDO0875HNRV/",
325            "accession": "IGVFDO0875HNRV",
326            "aliases": [
327                "buenrostro-bernstein:Donor 1895"
328            ],
329            "sex": "unspecified",
330            "status": "released",
331            "taxa": "Homo sapiens"
332        },
333        {
334            "@id": "/human-donors/IGVFDO2131TKFT/",
335            "accession": "IGVFDO2131TKFT",
336            "aliases": [
337                "buenrostro-bernstein:Donor 1811"
338            ],
339            "sex": "unspecified",
340            "status": "released",
341            "taxa": "Homo sapiens"
342        },
343        {
344            "@id": "/human-donors/IGVFDO5342CGKC/",
345            "accession": "IGVFDO5342CGKC",
346            "aliases": [
347                "buenrostro-bernstein:Donor 1882"
348            ],
349            "sex": "unspecified",
350            "status": "released",
351            "taxa": "Homo sapiens"
352        },
353        {
354            "@id": "/human-donors/IGVFDO1165TQMX/",
355            "accession": "IGVFDO1165TQMX",
356            "aliases": [
357                "buenrostro-bernstein:Donor 1887"
358            ],
359            "sex": "unspecified",
360            "status": "released",
361            "taxa": "Homo sapiens"
362        },
363        {
364            "@id": "/human-donors/IGVFDO1906JPPE/",
365            "accession": "IGVFDO1906JPPE",
366            "aliases": [
367                "buenrostro-bernstein:Donor 1893"
368            ],
369            "sex": "unspecified",
370            "status": "released",
371            "taxa": "Homo sapiens"
372        },
373        {
374            "@id": "/human-donors/IGVFDO6295KHUE/",
375            "accession": "IGVFDO6295KHUE",
376            "aliases": [
377                "buenrostro-bernstein:Donor 1863"
378            ],
379            "sex": "unspecified",
380            "status": "released",
381            "taxa": "Homo sapiens"
382        },
383        {
384            "@id": "/human-donors/IGVFDO5446TLJJ/",
385            "accession": "IGVFDO5446TLJJ",
386            "aliases": [
387                "buenrostro-bernstein:Donor 1894"
388            ],
389            "sex": "unspecified",
390            "status": "released",
391            "taxa": "Homo sapiens"
392        },
393        {
394            "@id": "/human-donors/IGVFDO3937NOVL/",
395            "accession": "IGVFDO3937NOVL",
396            "aliases": [
397                "buenrostro-bernstein:Donor 1858"
398            ],
399            "sex": "unspecified",
400            "status": "released",
401            "taxa": "Homo sapiens"
402        },
403        {
404            "@id": "/human-donors/IGVFDO9707NUOC/",
405            "accession": "IGVFDO9707NUOC",
406            "aliases": [
407                "buenrostro-bernstein:Donor 1859"
408            ],
409            "sex": "unspecified",
410            "status": "released",
411            "taxa": "Homo sapiens"
412        },
413        {
414            "@id": "/human-donors/IGVFDO6556DSRS/",
415            "accession": "IGVFDO6556DSRS",
416            "aliases": [
417                "buenrostro-bernstein:Donor 1848"
418            ],
419            "sex": "unspecified",
420            "status": "released",
421            "taxa": "Homo sapiens"
422        },
423        {
424            "@id": "/human-donors/IGVFDO6673DKZI/",
425            "accession": "IGVFDO6673DKZI",
426            "aliases": [
427                "buenrostro-bernstein:Donor 1880"
428            ],
429            "sex": "unspecified",
430            "status": "released",
431            "taxa": "Homo sapiens"
432        },
433        {
434            "@id": "/human-donors/IGVFDO9594EWNE/",
435            "accession": "IGVFDO9594EWNE",
436            "aliases": [
437                "buenrostro-bernstein:Donor 1878"
438            ],
439            "sex": "unspecified",
440            "status": "released",
441            "taxa": "Homo sapiens"
442        },
443        {
444            "@id": "/human-donors/IGVFDO2343ZVKW/",
445            "accession": "IGVFDO2343ZVKW",
446            "aliases": [
447                "buenrostro-bernstein:Donor 1869"
448            ],
449            "sex": "unspecified",
450            "status": "released",
451            "taxa": "Homo sapiens"
452        },
453        {
454            "@id": "/human-donors/IGVFDO9942ECYN/",
455            "accession": "IGVFDO9942ECYN",
456            "aliases": [
457                "buenrostro-bernstein:Donor 1742"
458            ],
459            "sex": "unspecified",
460            "status": "released",
461            "taxa": "Homo sapiens"
462        },
463        {
464            "@id": "/human-donors/IGVFDO0995XOJH/",
465            "accession": "IGVFDO0995XOJH",
466            "aliases": [
467                "buenrostro-bernstein:Donor 1872"
468            ],
469            "sex": "unspecified",
470            "status": "released",
471            "taxa": "Homo sapiens"
472        },
473        {
474            "@id": "/human-donors/IGVFDO4141QBHD/",
475            "accession": "IGVFDO4141QBHD",
476            "aliases": [
477                "buenrostro-bernstein:Donor 1883"
478            ],
479            "sex": "unspecified",
480            "status": "released",
481            "taxa": "Homo sapiens"
482        },
483        {
484            "@id": "/human-donors/IGVFDO3184WKWK/",
485            "accession": "IGVFDO3184WKWK",
486            "aliases": [
487                "buenrostro-bernstein:Donor 1861"
488            ],
489            "sex": "unspecified",
490            "status": "released",
491            "taxa": "Homo sapiens"
492        },
493        {
494            "@id": "/human-donors/IGVFDO4451SLQW/",
495            "accession": "IGVFDO4451SLQW",
496            "aliases": [
497                "buenrostro-bernstein:Donor 1789"
498            ],
499            "sex": "unspecified",
500            "status": "released",
501            "taxa": "Homo sapiens"
502        },
503        {
504            "@id": "/human-donors/IGVFDO8250RHCQ/",
505            "accession": "IGVFDO8250RHCQ",
506            "aliases": [
507                "buenrostro-bernstein:Donor 1854"
508            ],
509            "sex": "unspecified",
510            "status": "released",
511            "taxa": "Homo sapiens"
512        },
513        {
514            "@id": "/human-donors/IGVFDO0144AKUR/",
515            "accession": "IGVFDO0144AKUR",
516            "aliases": [
517                "buenrostro-bernstein:Donor 1850"
518            ],
519            "sex": "unspecified",
520            "status": "released",
521            "taxa": "Homo sapiens"
522        },
523        {
524            "@id": "/human-donors/IGVFDO4620JPIG/",
525            "accession": "IGVFDO4620JPIG",
526            "aliases": [
527                "buenrostro-bernstein:Donor 1822"
528            ],
529            "sex": "unspecified",
530            "status": "released",
531            "taxa": "Homo sapiens"
532        },
533        {
534            "@id": "/human-donors/IGVFDO3170VPEQ/",
535            "accession": "IGVFDO3170VPEQ",
536            "aliases": [
537                "buenrostro-bernstein:Donor 1864"
538            ],
539            "sex": "unspecified",
540            "status": "released",
541            "taxa": "Homo sapiens"
542        },
543        {
544            "@id": "/human-donors/IGVFDO7567RWAK/",
545            "accession": "IGVFDO7567RWAK",
546            "aliases": [
547                "buenrostro-bernstein:Donor 1857"
548            ],
549            "sex": "unspecified",
550            "status": "released",
551            "taxa": "Homo sapiens"
552        },
553        {
554            "@id": "/human-donors/IGVFDO4379UQON/",
555            "accession": "IGVFDO4379UQON",
556            "aliases": [
557                "buenrostro-bernstein:Donor 1842"
558            ],
559            "sex": "unspecified",
560            "status": "released",
561            "taxa": "Homo sapiens"
562        },
563        {
564            "@id": "/human-donors/IGVFDO2015BBZM/",
565            "accession": "IGVFDO2015BBZM",
566            "aliases": [
567                "buenrostro-bernstein:Donor 1813"
568            ],
569            "sex": "unspecified",
570            "status": "released",
571            "taxa": "Homo sapiens"
572        },
573        {
574            "@id": "/human-donors/IGVFDO5074GHND/",
575            "accession": "IGVFDO5074GHND",
576            "aliases": [
577                "buenrostro-bernstein:Donor 1890"
578            ],
579            "sex": "unspecified",
580            "status": "released",
581            "taxa": "Homo sapiens"
582        },
583        {
584            "@id": "/human-donors/IGVFDO1429GCHH/",
585            "accession": "IGVFDO1429GCHH",
586            "aliases": [
587                "buenrostro-bernstein:Donor 1810"
588            ],
589            "sex": "unspecified",
590            "status": "released",
591            "taxa": "Homo sapiens"
592        },
593        {
594            "@id": "/human-donors/IGVFDO0452ROLO/",
595            "accession": "IGVFDO0452ROLO",
596            "aliases": [
597                "buenrostro-bernstein:Donor 1867"
598            ],
599            "sex": "unspecified",
600            "status": "released",
601            "taxa": "Homo sapiens"
602        },
603        {
604            "@id": "/human-donors/IGVFDO2628QOSP/",
605            "accession": "IGVFDO2628QOSP",
606            "aliases": [
607                "buenrostro-bernstein:Donor 1830"
608            ],
609            "sex": "unspecified",
610            "status": "released",
611            "taxa": "Homo sapiens"
612        },
613        {
614            "@id": "/human-donors/IGVFDO7817ENDD/",
615            "accession": "IGVFDO7817ENDD",
616            "aliases": [
617                "buenrostro-bernstein:Donor 1877"
618            ],
619            "sex": "unspecified",
620            "status": "released",
621            "taxa": "Homo sapiens"
622        },
623        {
624            "@id": "/human-donors/IGVFDO5333XVCI/",
625            "accession": "IGVFDO5333XVCI",
626            "aliases": [
627                "buenrostro-bernstein:Donor 1818"
628            ],
629            "sex": "unspecified",
630            "status": "released",
631            "taxa": "Homo sapiens"
632        },
633        {
634            "@id": "/human-donors/IGVFDO8776OLQD/",
635            "accession": "IGVFDO8776OLQD",
636            "aliases": [
637                "buenrostro-bernstein:Donor 1744"
638            ],
639            "sex": "unspecified",
640            "status": "released",
641            "taxa": "Homo sapiens"
642        },
643        {
644            "@id": "/human-donors/IGVFDO7542OMCX/",
645            "accession": "IGVFDO7542OMCX",
646            "aliases": [
647                "buenrostro-bernstein:Donor 1819"
648            ],
649            "sex": "unspecified",
650            "status": "released",
651            "taxa": "Homo sapiens"
652        },
653        {
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2282                },
2283                {
2284                    "@id": "/institutional-certificates/cf9e5e74-e4e6-40d4-bf04-c86fafe9d17e/",
2285                    "certificate_identifier": "IP113-17",
2286                    "controlled_access": true,
2287                    "data_use_limitation": "GRU",
2288                    "status": "released"
2289                },
2290                {
2291                    "@id": "/institutional-certificates/109b8309-9842-4caa-80f7-9f3d1be0c8c1/",
2292                    "certificate_identifier": "IP113-19",
2293                    "controlled_access": true,
2294                    "data_use_limitation": "GRU",
2295                    "status": "released"
2296                },
2297                {
2298                    "@id": "/institutional-certificates/d1431ff4-0095-49ba-a179-5fe34043afeb/",
2299                    "certificate_identifier": "IP113-20",
2300                    "controlled_access": true,
2301                    "data_use_limitation": "GRU",
2302                    "status": "released"
2303                }
2304            ],
2305            "sample_terms": [
2306                {
2307                    "@id": "/sample-terms/EFO_0004905/",
2308                    "@type": [
2309                        "SampleTerm",
2310                        "OntologyTerm",
2311                        "Item"
2312                    ],
2313                    "status": "released",
2314                    "summary": "induced pluripotent stem cell",
2315                    "term_name": "induced pluripotent stem cell"
2316                }
2317            ],
2318            "status": "released",
2319            "summary": "Homo sapiens induced pluripotent stem pooled differentiated cell specimen induced to endodermal cell for 2 days (cellular sub pool: SS-PKR 179)",
2320            "targeted_sample_term": {
2321                "@id": "/sample-terms/CL_0000223/",
2322                "status": "released",
2323                "term_name": "endodermal cell"
2324            },
2325            "taxa": "Homo sapiens"
2326        }
2327    ],
2328    "schema_version": "26",
2329    "status": "released",
2330    "submitted_by": {
2331        "@id": "/users/c0838247-5022-46cf-a8fa-426e73bf4c94/",
2332        "title": "Siddarth Wekhande"
2333    },
2334    "submitted_files_timestamp": "2024-08-20T15:08:18.435185+00:00",
2335    "summary": "single-cell ATAC-seq (SHARE-seq)",
2336    "uuid": "0fdbdd9a-09fb-45d9-9e15-fde5923c4330"
2337}