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INDEXED
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MeasurementSet
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IGVFDS5016CFSP
IGVFDS5016CFSP
released
Json view
File Set Type
experimental data
Summary
single-cell ATAC-seq (SHARE-seq)
Assay Term
single-cell ATAC-seq
Sample Summaries
Homo sapiens (male, 49 years) bone marrow cell (cellular sub pool: SS-PKR 4)
Protocols
https://www.protocols.io/view/share-seq-v1-bmbik2ke
Aliases
bradley-bernstein:scATAC Lib 22
buenrostro-bernstein:scATAC Lib 22
Attribution
Jason Buenrostro, Broad
(
HG011986
—
Jason Buenrostro
)
Sequencing Results (Illumina)
16 items
1
2
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Read Names
Associated seqspec Files
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI0747RBNL
fastq
reads
R1
1417
Illumina NovaSeq 6000
978 B
Jason Buenrostro, Broad
validated
IGVFFI1331QNFP
fastq
reads
R1
1705
Illumina NovaSeq 6000
791 B
Jason Buenrostro, Broad
validated
IGVFFI1360MQCF
fastq
reads
R2
2375
Illumina NovaSeq 6000
734 MB
Jason Buenrostro, Broad
validated
IGVFFI3341POXF
fastq
reads
R1
1609
Illumina NovaSeq 6000
908 B
Jason Buenrostro, Broad
validated
IGVFFI3694EBJA
fastq
reads
R2
2279
Illumina NovaSeq 6000
730 MB
Jason Buenrostro, Broad
validated
IGVFFI4147CDOB
fastq
reads
R2
1705
Illumina NovaSeq 6000
1.3 KB
Jason Buenrostro, Broad
validated
IGVFFI5113NSSF
fastq
reads
R2
2567
Illumina NovaSeq 6000
725 MB
Jason Buenrostro, Broad
validated
IGVFFI5416DXXX
fastq
reads
R1
2567
Illumina NovaSeq 6000
423 MB
Jason Buenrostro, Broad
validated
IGVFFI6011SFGN
fastq
reads
R1
2279
Illumina NovaSeq 6000
427 MB
Jason Buenrostro, Broad
validated
IGVFFI6500LJME
fastq
reads
R1
1513
Illumina NovaSeq 6000
782 B
Jason Buenrostro, Broad
validated
Samples
1 item
Accession
Type
Sample Terms
Associated Construct Library Sets
Summary
IGVFSM8274BGKK
PrimaryCell
bone marrow
Homo sapiens (male, 49 years) bone marrow cell (cellular sub pool: SS-PKR 4)
Donors
1 item
Accession
Aliases
Sex
Taxa
IGVFDO8549ATSE
bradley-bernstein:Donor 1511
buenrostro-bernstein:Donor 1511
male
Homo sapiens
File Sets Using This Measurement Set as an Input
1 item
Accession
Type
Summary
Aliases
Lab
IGVFDS5278IBSB
AnalysisSet
SHARE-seq: fragments, sparse gene count matrix
buenrostro-bernstein:human-bone-marrow-analysis-set
Jason Buenrostro, Broad
Related Multiome Datasets
1 item
Accession
Type
Summary
Aliases
Lab
IGVFDS2439BCVO
MeasurementSet
single-cell RNA sequencing assay (SHARE-seq)
bradley-bernstein:scRNA Lib 22
buenrostro-bernstein:scRNA Lib 22
Jason Buenrostro, Broad