{
"@context": "/terms/",
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"@type": [
"MeasurementSet",
"FileSet",
"Item"
],
"accession": "IGVFDS5016CFSP",
"aliases": [
"bradley-bernstein:scATAC Lib 22",
"buenrostro-bernstein:scATAC Lib 22"
],
"assay_term": {
"@id": "/assay-terms/OBI_0002764/",
"status": "released",
"term_name": "single-cell ATAC-seq"
},
"audit": {
"INTERNAL_ACTION": [
{
"category": "mismatched status",
"detail": "Released primary cell [IGVFSM8274BGKK](/primary-cells/IGVFSM8274BGKK/) has in progress subobject source [jason-buenrostro](/sources/jason-buenrostro/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/primary-cells/IGVFSM8274BGKK/"
},
{
"category": "missing sequence specification",
"detail": "Measurement set [IGVFDS5016CFSP](/measurement-sets/IGVFDS5016CFSP/) has sequence file(s): [IGVFFI0747RBNL](/sequence-files/IGVFFI0747RBNL/), [IGVFFI8041BZGU](/sequence-files/IGVFFI8041BZGU/), [IGVFFI6500LJME](/sequence-files/IGVFFI6500LJME/), [IGVFFI8770AQLA](/sequence-files/IGVFFI8770AQLA/), [IGVFFI7612JOLD](/sequence-files/IGVFFI7612JOLD/), [IGVFFI6011SFGN](/sequence-files/IGVFFI6011SFGN/), [IGVFFI7800XSDN](/sequence-files/IGVFFI7800XSDN/), [IGVFFI4147CDOB](/sequence-files/IGVFFI4147CDOB/), [IGVFFI3694EBJA](/sequence-files/IGVFFI3694EBJA/), [IGVFFI5416DXXX](/sequence-files/IGVFFI5416DXXX/), [IGVFFI5113NSSF](/sequence-files/IGVFFI5113NSSF/), [IGVFFI8834PPYJ](/sequence-files/IGVFFI8834PPYJ/), [IGVFFI3341POXF](/sequence-files/IGVFFI3341POXF/), [IGVFFI1331QNFP](/sequence-files/IGVFFI1331QNFP/), [IGVFFI6691YHME](/sequence-files/IGVFFI6691YHME/), [IGVFFI1360MQCF](/sequence-files/IGVFFI1360MQCF/) which do not have any `seqspecs`. Sequence files in a file set are expected to link to a sequence specification file.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_missing_seqspec",
"path": "/measurement-sets/IGVFDS5016CFSP/"
}
],
"WARNING": [
{
"category": "missing barcode onlist",
"detail": "Measurement set [IGVFDS5016CFSP](/measurement-sets/IGVFDS5016CFSP/) has an `assay_term` of single-cell ATAC-seq but no `onlist_files` nor `onlist_methods`. Measurement sets to be processed via the single cell uniform pipeline are expected to have onlist files and onlist methods indicated.",
"level": 40,
"level_name": "WARNING",
"name": "audit_onlist",
"path": "/measurement-sets/IGVFDS5016CFSP/"
}
]
},
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},
"title": "A foundational resource of functional elements, TF footprints and gene regulatory interactions"
},
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"aliases": [
"bradley-bernstein:BioSam 4566_SS-PKR 4",
"buenrostro-bernstein:BioSam 4566_SS-PKR 4"
],
"classifications": [
"primary cell"
],
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0002371/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"status": "released",
"summary": "bone marrow",
"term_name": "bone marrow"
}
],
"status": "released",
"summary": "bone marrow cell (cellular sub pool: SS-PKR 4), male, Homo sapiens (49 years)",
"taxa": "Homo sapiens"
}
],
"schema_version": "23",
"status": "released",
"submitted_by": {
"@id": "/users/c0838247-5022-46cf-a8fa-426e73bf4c94/",
"title": "Siddarth Wekhande"
},
"submitted_files_timestamp": "2024-02-12T21:35:59.199708+00:00",
"summary": "single-cell ATAC-seq (SHARE-seq)",
"uuid": "4f2e6744-0d87-4ab2-8b42-e6ae367f1d37"
}