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INDEXED
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MeasurementSet
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IGVFDS4811UOUL
IGVFDS4811UOUL
released
Json view
File Set Type
experimental data
Control Type
unsorted FACS input
Summary
unsorted FACS input CRISPR prime editing Variant-EFFECTS integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
Assay Term
in vitro CRISPR screen using flow cytometry
Sample Summaries
Homo sapiens (male) THP-1 cell line modified with CRISPR prime editing Sp-nCas9-M-MLV RT (PE2), transduced (lentivirus) with a guide library
Protocols
https://www.protocols.io/view/flowfish-with-primeflow-36wgq3q4olk5/v1
Aliases
jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep1-FFrep3-FACS_Input_AmpliconSequencing
Attribution
Jesse Engreitz, Stanford
(
HG011972
—
Jesse Engreitz
)
Sequencing Results (Illumina)
8 items
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Read Names
Associated seqspec Files
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI3769ZLEZ
fastq
reads
R2
1
Illumina NextSeq 550
TCCTTGGT:TTGT
12 MB
Jesse Engreitz, Stanford
validated
IGVFFI3940MLJH
fastq
reads
R1
1
Illumina NextSeq 550
TCCTTGGT:TTGT
9.6 MB
Jesse Engreitz, Stanford
validated
IGVFFI5292WHFJ
fastq
reads
I2
1
Illumina NextSeq 550
TCCTTGGT:TTGT
2.2 MB
Jesse Engreitz, Stanford
validated
IGVFFI6174BXRG
fastq
reads
I1
1
Illumina NextSeq 550
CGTTACCA:TTGT
2.1 MB
Jesse Engreitz, Stanford
validated
IGVFFI7810CEFQ
fastq
reads
R2
1
Illumina NextSeq 550
CGTTACCA:TTGT
12 MB
Jesse Engreitz, Stanford
validated
IGVFFI8644AEIE
fastq
reads
I2
1
Illumina NextSeq 550
CGTTACCA:TTGT
2.1 MB
Jesse Engreitz, Stanford
validated
IGVFFI9336JEYJ
fastq
reads
I1
1
Illumina NextSeq 550
TCCTTGGT:TTGT
2.1 MB
Jesse Engreitz, Stanford
validated
IGVFFI9927IBIX
fastq
reads
R1
1
Illumina NextSeq 550
CGTTACCA:TTGT
9.5 MB
Jesse Engreitz, Stanford
validated
Samples
1 item
Accession
Type
Sample Terms
Associated Construct Library Sets
Summary
IGVFSM4241GNFT
InVitroSystem
THP-1
IGVFDS2385DHZO
Homo sapiens (male) THP-1 cell line modified with CRISPR prime editing Sp-nCas9-M-MLV RT (PE2), transduced (lentivirus) with a guide library
Donors
1 item
Accession
Aliases
Sex
Taxa
IGVFDO7359LVPI
igvf:donor_of_THP1
male
Homo sapiens
Associated Construct Library Sets
1 item
Accession
Summary
Library Design Files
IGVFDS2385DHZO
guide (sgRNA) library targeting sequence variants in a genomic locus
Control File Sets
1 item
Accession
Type
Summary
Aliases
Lab
IGVFDS5128CXIS
MeasurementSet
untransfected prime editing Variant-EFFECTS
jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-THP1-PE2_Exp4_NegControl_AmpliconSequencing
Jesse Engreitz, Stanford
File Sets Using This Measurement Set as an Input
1 item
Accession
Type
Summary
Aliases
Lab
IGVFDS4359OODY
AnalysisSet
CRISPR prime editing Variant-EFFECTS targeting PPIF: variant effects
jesse-engreitz:PPIF_promoter_Enformer_edits_THP1_Variant-FlowFISH_analysis
Jesse Engreitz, Stanford