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IGVFDS4704VICJ

released
File Set Type
experimental data
Summary
single-cell ATAC-seq (SHARE-seq)
Assay Term
single-cell ATAC-seq
Sample Summaries
  • Mus musculus C57BL/6 (female) brain tissue (cellular sub pool: SS-PKR 130)
Protocols
Aliases
bradley-bernstein:scATAC Lib 112
buenrostro-bernstein:scATAC Lib 112

Sequencing Results (Illumina)

4 items
Read Names
fastq
reads
R1
40
Read 1
224 MB
Jason Buenrostro, Broad
validated
fastq
reads
R1
240
Read 1
225 MB
Jason Buenrostro, Broad
validated
fastq
reads
R2
240
Read 2, Barcode index
397 MB
Jason Buenrostro, Broad
validated
fastq
reads
R2
40
Read 2, Barcode index
396 MB
Jason Buenrostro, Broad
validated

Samples

1 item
Accession
Type
Sample Terms
Associated Construct Library Sets
Summary
Tissue
Mus musculus C57BL/6 (female) brain tissue (cellular sub pool: SS-PKR 130)

Donors

1 item
Accession
Aliases
Sex
Taxa
  • bradley-bernstein:Donor 1503
  • buenrostro-bernstein:Donor 1503
female
Mus musculus

Related Multiome Datasets

5 items
MeasurementSet
single-cell RNA sequencing assay (SHARE-seq)
  • bradley-bernstein:scRNA Lib 74
  • buenrostro-bernstein:scRNA Lib 74
Jason Buenrostro, Broad
MeasurementSet
single-cell ATAC-seq (SHARE-seq)
  • bradley-bernstein:scATAC Lib 113
  • buenrostro-bernstein:scATAC Lib 113
Jason Buenrostro, Broad
MeasurementSet
single-cell RNA sequencing assay (SHARE-seq)
  • bradley-bernstein:scRNA Lib 73
  • buenrostro-bernstein:scRNA Lib 73
Jason Buenrostro, Broad
MeasurementSet
single-cell ATAC-seq (SHARE-seq)
  • bradley-bernstein:scATAC Lib 114
  • buenrostro-bernstein:scATAC Lib 114
Jason Buenrostro, Broad
MeasurementSet
single-cell RNA sequencing assay (SHARE-seq)
  • bradley-bernstein:scRNA Lib 75
  • buenrostro-bernstein:scRNA Lib 75
Jason Buenrostro, Broad

Attribution

Award
HG011986
Principal Investigator(s)
Contact P.I.
Jason Buenrostro
Lab
Jason Buenrostro, Broad