IGVFDS4124BSHW

released

File Set Type

experimental data

Summary

single-cell ATAC-seq (SHARE-seq)

Assay Term

single-cell ATAC-seq

Sample Summaries

Homo sapiens induced pluripotent stem pooled differentiated cell specimen induced to neural progenitor cell for 10 days (cellular sub pool: SS-PKR 205)

Protocols

https://www.protocols.io/view/share-seq-protocol-v2-2-di3y4gpw

Aliases

buenrostro-bernstein:scATAC Lib 586

Attribution

Jason Buenrostro, Broad

(

HG011986 — Jason Buenrostro

)

Sequencing Results (Illumina)

21 items

Read Names

IGVFFI0024BRJC

fastq

reads

1000

IGVFFI4267ZFYV

Illumina NovaSeq X

22773CLT3

228 MB

Jason Buenrostro, Broad

validated

IGVFFI0389WCNP

fastq

reads

958

Barcode index

IGVFFI2996CMDA

Illumina NovaSeq X

22773CLT3

244 MB

Jason Buenrostro, Broad

validated

IGVFFI0591VYNG

fastq

reads

1084

IGVFFI4130CBZG

Illumina NovaSeq X

22773CLT3

229 MB

Jason Buenrostro, Broad

validated

IGVFFI1021MYPK

fastq

reads

1042

IGVFFI5201EKCL

Illumina NovaSeq X

22773CLT3

518 MB

Jason Buenrostro, Broad

validated

IGVFFI1480ROON

fastq

reads

4089

IGVFFI4650AFDL

Illumina NovaSeq X

22523KLT3

243 MB

Jason Buenrostro, Broad

validated

IGVFFI1602DZMO

fastq

reads

4053

IGVFFI6321AQTV

Illumina NovaSeq X

22523KLT3

241 MB

Jason Buenrostro, Broad

validated

IGVFFI1822OQDN

fastq

reads

1084

IGVFFI4130CBZG

Illumina NovaSeq X

22773CLT3

517 MB

Jason Buenrostro, Broad

validated

IGVFFI1925YYRY

fastq

reads

1000

Barcode index

IGVFFI4267ZFYV

Illumina NovaSeq X

22773CLT3

249 MB

Jason Buenrostro, Broad

validated

IGVFFI2740DFZB

fastq

reads

1042

Barcode index

IGVFFI5201EKCL

Illumina NovaSeq X

22773CLT3

247 MB

Jason Buenrostro, Broad

validated

IGVFFI3249RQAN

fastq

reads

4017

Barcode index

IGVFFI7699NDUX

Illumina NovaSeq X

22523KLT3

246 MB

Jason Buenrostro, Broad

validated

Samples

1 item

Accession

Type

Sample Terms

Associated Construct Library Sets

Summary

IGVFSM1100PPNI

InVitroSystem

induced pluripotent stem cell

Homo sapiens induced pluripotent stem pooled differentiated cell specimen induced to neural progenitor cell for 10 days (cellular sub pool: SS-PKR 205)