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IGVFDS3632OOWJ

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This object is in preview status. Metadata is subject to change until this object is released.
File Set Type
experimental data
Summary
single-nucleus RNA sequencing assay (10x multiome)
Assay Term
single-nucleus RNA sequencing assay
Sample Summaries
  • multiplexed sample: Homo sapiens (male, 87 years) substantia nigra tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (male, 85 years) posterior cingulate gyrus tissue associated with Parkinson's disease; ... and 10 more samples
Protocols
Aliases
igvf:corces_measurementSet_RP017_G1_RNA

Sequencing Results (Illumina)

16 items
Read Names
fastq
reads
I1
1
223H55LT3
2
353 MB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
R1
1
Read 1
223H55LT3
2
1.0 GB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
I2
1
223H55LT3
2
329 MB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
I2
1
223H55LT3
4
328 MB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
R2
1
Read 2
223H55LT3
1
2.1 GB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
R2
1
Read 2
223H55LT3
3
2.1 GB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
R2
1
Read 2
223H55LT3
4
2.2 GB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
I1
1
223H55LT3
4
353 MB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
I1
1
223H55LT3
1
341 MB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
R1
1
Read 1
223H55LT3
1
972 MB
Ryan Corces, Gladstone Institute UCSF
validated

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Associated Construct Library Sets
Summary
MultiplexedSample
multiplexed sample: Homo sapiens (male, 87 years) substantia nigra tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (male, 85 years) posterior cingulate gyrus tissue associated with Parkinson's disease; ... and 10 more samples

Donors

12 items
Aliases
  • igvf:corces_donor_BANN1805
male
Homo sapiens
  • igvf:corces_donor_BANN1851
male
Homo sapiens
  • igvf:corces_donor_BANN0413
male
Homo sapiens
  • igvf:corces_donor_BANN1028
male
Homo sapiens
  • igvf:corces_donor_BANN1083
male
Homo sapiens
  • igvf:corces_donor_BANN1070
male
Homo sapiens
  • igvf:corces_donor_BANN1830
female
Homo sapiens
  • igvf:corces_donor_BANN1858
male
Homo sapiens
  • igvf:corces_donor_BANN2005
male
Homo sapiens
  • igvf:corces_donor_BANN1235
male
Homo sapiens

Related Multiome Datasets

1 item
Accession
Type
Summary
Aliases
Lab
MeasurementSet
single-nucleus ATAC-seq (10x multiome)
  • igvf:corces_measurementSet_RP017_G1_ATAC
Ryan Corces, Gladstone Institute UCSF

Attribution

Award
HG012076
Principal Investigator(s)
Contact P.I.
Ansuman Satpathy
Lab
Ryan Corces, Gladstone Institute UCSF