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INDEXED
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MeasurementSet
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IGVFDS3537VLZQ
IGVFDS3537VLZQ
released
Json view
File Set Type
experimental data
Summary
single-cell ATAC-seq (SHARE-seq)
Assay Term
single-cell ATAC-seq
Sample Summaries
Homo sapiens induced pluripotent stem pooled cell specimen (cellular sub pool: SS-PKR 182)
Protocols
https://www.protocols.io/view/share-seq-protocol-v2-2-di3y4gpw
Aliases
buenrostro-bernstein:scATAC Lib 460
Attribution
Jason Buenrostro, Broad
(
HG011986
—
Jason Buenrostro
)
Sequencing Results (Illumina)
30 items
1
2
3
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Read Names
Associated seqspec Files
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI0944MJQE
fastq
reads
R1
9154
Read 1
IGVFFI0138NPPY
Illumina NovaSeq X
22LMVNLT4
1.0 GB
Jason Buenrostro, Broad
validated
IGVFFI1126NLYB
fastq
reads
R1
4310
Read 1
IGVFFI1749FXLA
Illumina NovaSeq 6000
H75F7DSX5
7.0 GB
Jason Buenrostro, Broad
validated
IGVFFI1180VOLA
fastq
reads
I1
9058
Barcode index
IGVFFI7300TARZ
Illumina NovaSeq X
22LMVNLT4
635 MB
Jason Buenrostro, Broad
validated
IGVFFI1643VSGL
fastq
reads
R2
8770
Read 2
IGVFFI2647BCBE
Illumina NovaSeq X
22LMVNLT4
1.1 GB
Jason Buenrostro, Broad
validated
IGVFFI2692LWUQ
fastq
reads
R2
9058
Read 2
IGVFFI7300TARZ
Illumina NovaSeq X
22LMVNLT4
1.0 GB
Jason Buenrostro, Broad
validated
IGVFFI2902YMBN
fastq
reads
R1
8674
Read 1
IGVFFI7285AVTF
Illumina NovaSeq X
22LMVNLT4
1.1 GB
Jason Buenrostro, Broad
validated
IGVFFI2927BJQL
fastq
reads
R1
8578
Read 1
IGVFFI0143ORQO
Illumina NovaSeq X
22LMVNLT4
1.1 GB
Jason Buenrostro, Broad
validated
IGVFFI4472VOPI
fastq
reads
R2
4310
Read 2
IGVFFI1749FXLA
Illumina NovaSeq 6000
H75F7DSX5
3.2 GB
Jason Buenrostro, Broad
validated
IGVFFI4861SEAY
fastq
reads
I1
8866
Barcode index
IGVFFI7136DBLU
Illumina NovaSeq X
22LMVNLT4
642 MB
Jason Buenrostro, Broad
validated
IGVFFI5185OSIH
fastq
reads
R1
9058
Read 1
IGVFFI7300TARZ
Illumina NovaSeq X
22LMVNLT4
1.1 GB
Jason Buenrostro, Broad
validated
Samples
1 item
Accession
Type
Sample Terms
Associated Construct Library Sets
Summary
IGVFSM0308FMJQ
InVitroSystem
induced pluripotent stem cell
Homo sapiens induced pluripotent stem pooled cell specimen (cellular sub pool: SS-PKR 182)
Donors
100 items
1
2
3
4
5
10
Accession
Aliases
Sex
Taxa
IGVFDO0143YSWQ
buenrostro-bernstein:Donor 1860
unspecified
Homo sapiens
IGVFDO0144AKUR
buenrostro-bernstein:Donor 1850
unspecified
Homo sapiens
IGVFDO0166JLWT
buenrostro-bernstein:Donor 1816
unspecified
Homo sapiens
IGVFDO0186ZZOL
buenrostro-bernstein:Donor 1862
unspecified
Homo sapiens
IGVFDO0233FJJF
buenrostro-bernstein:Donor 1834
unspecified
Homo sapiens
IGVFDO0273LMQQ
buenrostro-bernstein:Donor 1876
unspecified
Homo sapiens
IGVFDO0285FFEG
buenrostro-bernstein:Donor 1828
unspecified
Homo sapiens
IGVFDO0392YIJG
buenrostro-bernstein:Donor 1892
unspecified
Homo sapiens
IGVFDO0436YOXD
buenrostro-bernstein:Donor 1745
unspecified
Homo sapiens
IGVFDO0452ROLO
buenrostro-bernstein:Donor 1867
unspecified
Homo sapiens
Related Multiome Datasets
1 item
Accession
Type
Summary
Aliases
Lab
IGVFDS4345CVPC
MeasurementSet
single-cell RNA sequencing assay (SHARE-seq)
buenrostro-bernstein:scRNA Lib 373
Jason Buenrostro, Broad