{
"@context": "/terms/",
"@id": "/measurement-sets/IGVFDS3537VLZQ/",
"@type": [
"MeasurementSet",
"FileSet",
"Item"
],
"accession": "IGVFDS3537VLZQ",
"aliases": [
"buenrostro-bernstein:scATAC Lib 460"
],
"assay_term": {
"@id": "/assay-terms/OBI_0002764/",
"assay_slims": [
"chromatin accessibility"
],
"status": "released",
"term_name": "single-cell ATAC-seq"
},
"audit": {
"INTERNAL_ACTION": [
{
"category": "missing publication",
"detail": "Measurement set [IGVFDS3537VLZQ](/measurement-sets/IGVFDS3537VLZQ/) has no `publications`. Released and archived file sets are expected to be associated with a publication.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_file_set_missing_publication",
"path": "/measurement-sets/IGVFDS3537VLZQ/"
},
{
"category": "mismatched status",
"detail": "Released measurement set [IGVFDS3537VLZQ](/measurement-sets/IGVFDS3537VLZQ/) has in progress subobject tabular file [IGVFFI8433TDKP](/tabular-files/IGVFFI8433TDKP/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/measurement-sets/IGVFDS3537VLZQ/"
},
{
"category": "mismatched status",
"detail": "Released measurement set [IGVFDS3537VLZQ](/measurement-sets/IGVFDS3537VLZQ/) has in progress subobject tabular file [IGVFFI0400MBIM](/tabular-files/IGVFFI0400MBIM/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/measurement-sets/IGVFDS3537VLZQ/"
},
{
"category": "missing publication",
"detail": "In vitro system [IGVFSM0308FMJQ](/in-vitro-systems/IGVFSM0308FMJQ/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_sample_missing_publication",
"path": "/in-vitro-systems/IGVFSM0308FMJQ/"
}
],
"NOT_COMPLIANT": [
{
"category": "missing strand specificity",
"detail": "Measurement set [IGVFDS3537VLZQ](/measurement-sets/IGVFDS3537VLZQ/) is missing required `strand_specificity`. Single-cell assays are expected to specify strand specificity.",
"level": 50,
"level_name": "NOT_COMPLIANT",
"name": "audit_missing_strand_specificity",
"path": "/measurement-sets/IGVFDS3537VLZQ/"
}
]
},
"award": {
"@id": "/awards/HG011986/",
"component": "mapping",
"contact_pi": {
"@id": "/users/33c6eb70-e143-4f77-9661-4b3905737daa/",
"title": "Jason Buenrostro"
},
"title": "A foundational resource of functional elements, TF footprints and gene regulatory interactions"
},
"control_for": [],
"controlled_access": true,
"creation_timestamp": "2024-08-20T15:00:51.266645+00:00",
"data_use_limitation_summaries": [
"GRU"
],
"donors": [
{
"@id": "/human-donors/IGVFDO6969ZGNB/",
"accession": "IGVFDO6969ZGNB",
"aliases": [
"buenrostro-bernstein:Donor 1844"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO6694QTLS/",
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"aliases": [
"buenrostro-bernstein:Donor 1826"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO3707NTZB/",
"accession": "IGVFDO3707NTZB",
"aliases": [
"buenrostro-bernstein:Donor 1853"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO3184WKWK/",
"accession": "IGVFDO3184WKWK",
"aliases": [
"buenrostro-bernstein:Donor 1861"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO6675DJLJ/",
"accession": "IGVFDO6675DJLJ",
"aliases": [
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],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO5074GHND/",
"accession": "IGVFDO5074GHND",
"aliases": [
"buenrostro-bernstein:Donor 1890"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO2627YUXH/",
"accession": "IGVFDO2627YUXH",
"aliases": [
"buenrostro-bernstein:Donor 1886"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO3170VPEQ/",
"accession": "IGVFDO3170VPEQ",
"aliases": [
"buenrostro-bernstein:Donor 1864"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO2044WGSW/",
"accession": "IGVFDO2044WGSW",
"aliases": [
"buenrostro-bernstein:Donor 1856"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO0995XOJH/",
"accession": "IGVFDO0995XOJH",
"aliases": [
"buenrostro-bernstein:Donor 1872"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO1535CIEE/",
"accession": "IGVFDO1535CIEE",
"aliases": [
"buenrostro-bernstein:Donor 1793"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO7817ENDD/",
"accession": "IGVFDO7817ENDD",
"aliases": [
"buenrostro-bernstein:Donor 1877"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO4141QBHD/",
"accession": "IGVFDO4141QBHD",
"aliases": [
"buenrostro-bernstein:Donor 1883"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO5257YVJL/",
"accession": "IGVFDO5257YVJL",
"aliases": [
"buenrostro-bernstein:Donor 1825"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO0144AKUR/",
"accession": "IGVFDO0144AKUR",
"aliases": [
"buenrostro-bernstein:Donor 1850"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO8727EFXZ/",
"accession": "IGVFDO8727EFXZ",
"aliases": [
"buenrostro-bernstein:Donor 1831"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO0674VHCY/",
"accession": "IGVFDO0674VHCY",
"aliases": [
"buenrostro-bernstein:Donor 1896"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO6556DSRS/",
"accession": "IGVFDO6556DSRS",
"aliases": [
"buenrostro-bernstein:Donor 1848"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO1502TPVD/",
"accession": "IGVFDO1502TPVD",
"aliases": [
"buenrostro-bernstein:Donor 1849"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO9301UFXR/",
"accession": "IGVFDO9301UFXR",
"aliases": [
"buenrostro-bernstein:Donor 1815"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO6720KIII/",
"accession": "IGVFDO6720KIII",
"aliases": [
"buenrostro-bernstein:Donor 1868"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO2343ZVKW/",
"accession": "IGVFDO2343ZVKW",
"aliases": [
"buenrostro-bernstein:Donor 1869"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO0143YSWQ/",
"accession": "IGVFDO0143YSWQ",
"aliases": [
"buenrostro-bernstein:Donor 1860"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO4451SLQW/",
"accession": "IGVFDO4451SLQW",
"aliases": [
"buenrostro-bernstein:Donor 1789"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO9594EWNE/",
"accession": "IGVFDO9594EWNE",
"aliases": [
"buenrostro-bernstein:Donor 1878"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO8404YTWG/",
"accession": "IGVFDO8404YTWG",
"aliases": [
"buenrostro-bernstein:Donor 1865"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO0392YIJG/",
"accession": "IGVFDO0392YIJG",
"aliases": [
"buenrostro-bernstein:Donor 1892"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO2298PENP/",
"accession": "IGVFDO2298PENP",
"aliases": [
"buenrostro-bernstein:Donor 1879"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO0436YOXD/",
"accession": "IGVFDO0436YOXD",
"aliases": [
"buenrostro-bernstein:Donor 1745"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO4620JPIG/",
"accession": "IGVFDO4620JPIG",
"aliases": [
"buenrostro-bernstein:Donor 1822"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO6553AADC/",
"accession": "IGVFDO6553AADC",
"aliases": [
"buenrostro-bernstein:Donor 1841"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO0233FJJF/",
"accession": "IGVFDO0233FJJF",
"aliases": [
"buenrostro-bernstein:Donor 1834"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO1656HYLL/",
"accession": "IGVFDO1656HYLL",
"aliases": [
"buenrostro-bernstein:Donor 1847"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO6180JBWH/",
"accession": "IGVFDO6180JBWH",
"aliases": [
"buenrostro-bernstein:Donor 1855"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO2453FLSI/",
"accession": "IGVFDO2453FLSI",
"aliases": [
"buenrostro-bernstein:Donor 1832"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO2372UULO/",
"accession": "IGVFDO2372UULO",
"aliases": [
"buenrostro-bernstein:Donor 1840"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO5686BULO/",
"accession": "IGVFDO5686BULO",
"aliases": [
"buenrostro-bernstein:Donor 1870"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO6316KUFG/",
"accession": "IGVFDO6316KUFG",
"aliases": [
"buenrostro-bernstein:Donor 1871"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO0527HIIJ/",
"accession": "IGVFDO0527HIIJ",
"aliases": [
"buenrostro-bernstein:Donor 1838"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO8532BOID/",
"accession": "IGVFDO8532BOID",
"aliases": [
"buenrostro-bernstein:Donor 1823"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO0875HNRV/",
"accession": "IGVFDO0875HNRV",
"aliases": [
"buenrostro-bernstein:Donor 1895"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO0186ZZOL/",
"accession": "IGVFDO0186ZZOL",
"aliases": [
"buenrostro-bernstein:Donor 1862"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO0597VIVH/",
"accession": "IGVFDO0597VIVH",
"aliases": [
"buenrostro-bernstein:Donor 1874"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO6626TJEC/",
"accession": "IGVFDO6626TJEC",
"aliases": [
"buenrostro-bernstein:Donor 1888"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO8979DYIF/",
"accession": "IGVFDO8979DYIF",
"aliases": [
"buenrostro-bernstein:Donor 1743"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO3937NOVL/",
"accession": "IGVFDO3937NOVL",
"aliases": [
"buenrostro-bernstein:Donor 1858"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO1778GJAD/",
"accession": "IGVFDO1778GJAD",
"aliases": [
"buenrostro-bernstein:Donor 1778"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO1318DUVG/",
"accession": "IGVFDO1318DUVG",
"aliases": [
"buenrostro-bernstein:Donor 1833"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO5333XVCI/",
"accession": "IGVFDO5333XVCI",
"aliases": [
"buenrostro-bernstein:Donor 1818"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO1697JGEF/",
"accession": "IGVFDO1697JGEF",
"aliases": [
"buenrostro-bernstein:Donor 1835"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO8776OLQD/",
"accession": "IGVFDO8776OLQD",
"aliases": [
"buenrostro-bernstein:Donor 1744"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO9737GFZX/",
"accession": "IGVFDO9737GFZX",
"aliases": [
"buenrostro-bernstein:Donor 1839"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO5342CGKC/",
"accession": "IGVFDO5342CGKC",
"aliases": [
"buenrostro-bernstein:Donor 1882"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO8772PWON/",
"accession": "IGVFDO8772PWON",
"aliases": [
"buenrostro-bernstein:Donor 1873"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO3773GAHC/",
"accession": "IGVFDO3773GAHC",
"aliases": [
"buenrostro-bernstein:Donor 1817"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO1906JPPE/",
"accession": "IGVFDO1906JPPE",
"aliases": [
"buenrostro-bernstein:Donor 1893"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO1215CYXN/",
"accession": "IGVFDO1215CYXN",
"aliases": [
"buenrostro-bernstein:Donor 1843"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO3364ORGK/",
"accession": "IGVFDO3364ORGK",
"aliases": [
"buenrostro-bernstein:Donor 1897"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO0452ROLO/",
"accession": "IGVFDO0452ROLO",
"aliases": [
"buenrostro-bernstein:Donor 1867"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO5895ABMM/",
"accession": "IGVFDO5895ABMM",
"aliases": [
"buenrostro-bernstein:Donor 1824"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO0455AULY/",
"accession": "IGVFDO0455AULY",
"aliases": [
"buenrostro-bernstein:Donor 1814"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO2628QOSP/",
"accession": "IGVFDO2628QOSP",
"aliases": [
"buenrostro-bernstein:Donor 1830"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO7476FWEA/",
"accession": "IGVFDO7476FWEA",
"aliases": [
"buenrostro-bernstein:Donor 1851"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO7956CWXZ/",
"accession": "IGVFDO7956CWXZ",
"aliases": [
"buenrostro-bernstein:Donor 1821"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO3154SUBV/",
"accession": "IGVFDO3154SUBV",
"aliases": [
"buenrostro-bernstein:Donor 1746"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO4689NFPC/",
"accession": "IGVFDO4689NFPC",
"aliases": [
"buenrostro-bernstein:Donor 1770"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO6328ESSA/",
"accession": "IGVFDO6328ESSA",
"aliases": [
"buenrostro-bernstein:Donor 1768"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO0285FFEG/",
"accession": "IGVFDO0285FFEG",
"aliases": [
"buenrostro-bernstein:Donor 1828"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO6890GKJS/",
"accession": "IGVFDO6890GKJS",
"aliases": [
"buenrostro-bernstein:Donor 1836"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO6704FGWL/",
"accession": "IGVFDO6704FGWL",
"aliases": [
"buenrostro-bernstein:Donor 1875"
],
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