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IGVFDS3438BBIZ
IGVFDS3438BBIZ
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File Set Type
experimental data
Summary
single-nucleus RNA sequencing assay (10x multiome)
Assay Term
single-nucleus RNA sequencing assay
Sample Summaries
multiplexed sample: Homo sapiens (male, 78 years) putamen tissue associated with Parkinson's disease, mild cognitive impairment; Homo sapiens (male, 70 years) putamen tissue associated with Parkinson's disease; ... and 6 more samples
Protocols
https://www.protocols.io/view/chromium-next-gem-single-cell-multiome-atac-gene-e-d5k784zn
Aliases
igvf:corces_measurementSet_RP031_G3_RNA
Attribution
Ryan Corces, Gladstone Institute UCSF
(
HG012076
—
Ansuman Satpathy
)
Sequencing Results (Illumina)
12 items
1
2
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Read Names
Associated seqspec Files
Sequence Specification Document
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI0012NMWQ
fastq
reads
I2
1
Illumina NovaSeq X
19NHCA4LE
7
1.2 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI0844LTQC
fastq
reads
I2
1
Illumina NovaSeq X
19NHCA4LE
8
1.2 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI1192NRAV
fastq
reads
R2
1
Read 2
Illumina NovaSeq X
19NHCA4LE
7
11 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI1625LEJS
fastq
reads
R2
1
Read 2
Illumina NovaSeq X
19NHCA4LE
6
11 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI4827USTE
fastq
reads
R1
1
Read 1
Illumina NovaSeq X
19NHCA4LE
8
14 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI5113ZEYX
fastq
reads
R1
1
Read 1
Illumina NovaSeq X
19NHCA4LE
6
14 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI7920GPAC
fastq
reads
I1
1
Illumina NovaSeq X
19NHCA4LE
7
1.2 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI7961IFEO
fastq
reads
I1
1
Illumina NovaSeq X
19NHCA4LE
8
1.2 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI8928ACCO
fastq
reads
I1
1
Illumina NovaSeq X
19NHCA4LE
6
1.2 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI9470ENSF
fastq
reads
R2
1
Read 2
Illumina NovaSeq X
19NHCA4LE
8
10 GB
Ryan Corces, Gladstone Institute UCSF
validated
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Associated Construct Library Sets
Summary
IGVFSM7198HQDQ
MultiplexedSample
posterior cingulate gyrus
,
putamen
,
substantia nigra
Alzheimer disease
,
cerebral amyloid angiopathy
,
mild cognitive impairment
,
multiple sclerosis
,
Parkinson's disease
multiplexed sample: Homo sapiens (male, 78 years) putamen tissue associated with Parkinson's disease, mild cognitive impairment; Homo sapiens (male, 70 years) putamen tissue associated with Parkinson's disease; ... and 6 more samples
Donors
8 items
Accession
Aliases
Sex
Taxa
IGVFDO5194SXHC
igvf:corces_donor_BANN1747
male
Homo sapiens
IGVFDO5410JIJT
igvf:corces_donor_BANN0919
male
Homo sapiens
IGVFDO6013FYCW
igvf:corces_donor_BANN0912
male
Homo sapiens
IGVFDO7109IWDJ
igvf:corces_donor_BANN2005
male
Homo sapiens
IGVFDO7186XJLL
igvf:corces_donor_BANN1639
male
Homo sapiens
IGVFDO8155MCUV
igvf:corces_donor_BANN0437
female
Homo sapiens
IGVFDO8458OKEW
igvf:corces_donor_BANN1623
male
Homo sapiens
IGVFDO9211DWXZ
igvf:corces_donor_BANN1352
female
Homo sapiens
Related Multiome Datasets
1 item
Accession
Type
Summary
Aliases
Lab
IGVFDS1602DOZK
MeasurementSet
single-nucleus ATAC-seq (10x multiome)
igvf:corces_measurementSet_RP031_G3_ATAC
Ryan Corces, Gladstone Institute UCSF