{
"@context": "/terms/",
"@id": "/measurement-sets/IGVFDS3438BBIZ/",
"@type": [
"MeasurementSet",
"FileSet",
"Item"
],
"accession": "IGVFDS3438BBIZ",
"aliases": [
"igvf:corces_measurementSet_RP031_G3_RNA"
],
"assay_term": {
"@id": "/assay-terms/OBI_0003109/",
"assay_slims": [
"gene expression"
],
"status": "released",
"term_name": "single-nucleus RNA sequencing assay"
},
"audit": {
"INTERNAL_ACTION": [
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO8458OKEW](/human-donors/IGVFDO8458OKEW/) has in progress subobject phenotypic feature [3f62e325-e003-4f54-a5ed-1e5ab90bffbb](/phenotypic-features/3f62e325-e003-4f54-a5ed-1e5ab90bffbb/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO8458OKEW/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO8458OKEW](/human-donors/IGVFDO8458OKEW/) has in progress subobject phenotypic feature [4a89566b-e6ee-4846-b48a-601a52c201ab](/phenotypic-features/4a89566b-e6ee-4846-b48a-601a52c201ab/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO8458OKEW/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO8458OKEW](/human-donors/IGVFDO8458OKEW/) has in progress subobject phenotypic feature [b1bcbcb3-200c-4716-b4cc-8cc2cc3ee208](/phenotypic-features/b1bcbcb3-200c-4716-b4cc-8cc2cc3ee208/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO8458OKEW/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO8458OKEW](/human-donors/IGVFDO8458OKEW/) has in progress subobject phenotypic feature [fc1de29e-57a0-4cdb-ac92-597485b27795](/phenotypic-features/fc1de29e-57a0-4cdb-ac92-597485b27795/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO8458OKEW/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO8458OKEW](/human-donors/IGVFDO8458OKEW/) has in progress subobject phenotypic feature [9109c230-248d-47c3-9cff-73daf2db597a](/phenotypic-features/9109c230-248d-47c3-9cff-73daf2db597a/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO8458OKEW/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO8458OKEW](/human-donors/IGVFDO8458OKEW/) has in progress subobject phenotypic feature [4fa3d51f-faa7-48b9-b76b-58bbb23ba4cb](/phenotypic-features/4fa3d51f-faa7-48b9-b76b-58bbb23ba4cb/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO8458OKEW/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO6013FYCW](/human-donors/IGVFDO6013FYCW/) has in progress subobject phenotypic feature [b205a9bf-71f0-45f4-8fe9-d3ecd7e56b67](/phenotypic-features/b205a9bf-71f0-45f4-8fe9-d3ecd7e56b67/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO6013FYCW/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO6013FYCW](/human-donors/IGVFDO6013FYCW/) has in progress subobject phenotypic feature [61f3a82b-e754-457c-949c-01aeff12f1e1](/phenotypic-features/61f3a82b-e754-457c-949c-01aeff12f1e1/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO6013FYCW/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO6013FYCW](/human-donors/IGVFDO6013FYCW/) has in progress subobject phenotypic feature [1b5dfd5f-7289-4dcc-afbe-0c6e4446f22c](/phenotypic-features/1b5dfd5f-7289-4dcc-afbe-0c6e4446f22c/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO6013FYCW/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO6013FYCW](/human-donors/IGVFDO6013FYCW/) has in progress subobject phenotypic feature [b1bac7dd-412a-460a-9336-044c2b41f36b](/phenotypic-features/b1bac7dd-412a-460a-9336-044c2b41f36b/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO6013FYCW/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO6013FYCW](/human-donors/IGVFDO6013FYCW/) has in progress subobject phenotypic feature [0b83aa3d-f968-4f99-9ed1-6035e64cf81d](/phenotypic-features/0b83aa3d-f968-4f99-9ed1-6035e64cf81d/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO6013FYCW/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO6013FYCW](/human-donors/IGVFDO6013FYCW/) has in progress subobject phenotypic feature [25df185e-787e-41d8-b161-a524d1183f55](/phenotypic-features/25df185e-787e-41d8-b161-a524d1183f55/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO6013FYCW/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO7186XJLL](/human-donors/IGVFDO7186XJLL/) has in progress subobject phenotypic feature [2d965f3b-4869-4a71-96f5-9b35c25cd94a](/phenotypic-features/2d965f3b-4869-4a71-96f5-9b35c25cd94a/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO7186XJLL/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO7186XJLL](/human-donors/IGVFDO7186XJLL/) has in progress subobject phenotypic feature [d78f4b48-7bfb-40b4-a5a7-4e2207d7a43b](/phenotypic-features/d78f4b48-7bfb-40b4-a5a7-4e2207d7a43b/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO7186XJLL/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO7186XJLL](/human-donors/IGVFDO7186XJLL/) has in progress subobject phenotypic feature [f869ce97-cce9-4af8-8c36-07e368584a17](/phenotypic-features/f869ce97-cce9-4af8-8c36-07e368584a17/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO7186XJLL/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO7186XJLL](/human-donors/IGVFDO7186XJLL/) has in progress subobject phenotypic feature [6ea3add1-256e-497d-b2ed-6440e1b9c61d](/phenotypic-features/6ea3add1-256e-497d-b2ed-6440e1b9c61d/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO7186XJLL/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO7186XJLL](/human-donors/IGVFDO7186XJLL/) has in progress subobject phenotypic feature [fc0c92f4-96a4-4665-bf46-bf345a1cb081](/phenotypic-features/fc0c92f4-96a4-4665-bf46-bf345a1cb081/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO7186XJLL/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO7186XJLL](/human-donors/IGVFDO7186XJLL/) has in progress subobject phenotypic feature [e6ce9dcf-358f-4bfa-88fe-80aa93093ef6](/phenotypic-features/e6ce9dcf-358f-4bfa-88fe-80aa93093ef6/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO7186XJLL/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO5194SXHC](/human-donors/IGVFDO5194SXHC/) has in progress subobject phenotypic feature [359e56f1-634f-4096-b79c-f872a8108e1c](/phenotypic-features/359e56f1-634f-4096-b79c-f872a8108e1c/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO5194SXHC/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO5194SXHC](/human-donors/IGVFDO5194SXHC/) has in progress subobject phenotypic feature [56bca94c-e5cb-4bd1-b90a-9977dedaa882](/phenotypic-features/56bca94c-e5cb-4bd1-b90a-9977dedaa882/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO5194SXHC/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO5194SXHC](/human-donors/IGVFDO5194SXHC/) has in progress subobject phenotypic feature [b47cc28c-d555-41de-a0dc-7781d0884be0](/phenotypic-features/b47cc28c-d555-41de-a0dc-7781d0884be0/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO5194SXHC/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO5194SXHC](/human-donors/IGVFDO5194SXHC/) has in progress subobject phenotypic feature [a6b0187e-c51c-447e-866d-b3e071ab31a3](/phenotypic-features/a6b0187e-c51c-447e-866d-b3e071ab31a3/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO5194SXHC/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO5194SXHC](/human-donors/IGVFDO5194SXHC/) has in progress subobject phenotypic feature [ee18415f-0f87-45dc-b22c-da8f3ea2b325](/phenotypic-features/ee18415f-0f87-45dc-b22c-da8f3ea2b325/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO5194SXHC/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO5194SXHC](/human-donors/IGVFDO5194SXHC/) has in progress subobject phenotypic feature [089d8c0e-3573-4f1a-a25e-68c9e9178176](/phenotypic-features/089d8c0e-3573-4f1a-a25e-68c9e9178176/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO5194SXHC/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO5410JIJT](/human-donors/IGVFDO5410JIJT/) has in progress subobject phenotypic feature [0bb4a2a6-714d-4f1b-b1ca-f553eaddf065](/phenotypic-features/0bb4a2a6-714d-4f1b-b1ca-f553eaddf065/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO5410JIJT/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO5410JIJT](/human-donors/IGVFDO5410JIJT/) has in progress subobject phenotypic feature [a641a480-5815-4668-9082-c3eea81343dd](/phenotypic-features/a641a480-5815-4668-9082-c3eea81343dd/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO5410JIJT/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO5410JIJT](/human-donors/IGVFDO5410JIJT/) has in progress subobject phenotypic feature [3101c455-2038-49a5-9ba3-d6d44b02e1af](/phenotypic-features/3101c455-2038-49a5-9ba3-d6d44b02e1af/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO5410JIJT/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO5410JIJT](/human-donors/IGVFDO5410JIJT/) has in progress subobject phenotypic feature [f302fb2e-c140-4148-a63f-4995c94219cd](/phenotypic-features/f302fb2e-c140-4148-a63f-4995c94219cd/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO5410JIJT/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO5410JIJT](/human-donors/IGVFDO5410JIJT/) has in progress subobject phenotypic feature [8571b362-6133-4f95-8a7d-3f8eadd9f3e7](/phenotypic-features/8571b362-6133-4f95-8a7d-3f8eadd9f3e7/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO5410JIJT/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO5410JIJT](/human-donors/IGVFDO5410JIJT/) has in progress subobject phenotypic feature [1baae586-6df7-4bd4-b45d-715e7c843036](/phenotypic-features/1baae586-6df7-4bd4-b45d-715e7c843036/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO5410JIJT/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO7109IWDJ](/human-donors/IGVFDO7109IWDJ/) has in progress subobject phenotypic feature [c7893559-54d2-4768-bfcc-e705d88c884d](/phenotypic-features/c7893559-54d2-4768-bfcc-e705d88c884d/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO7109IWDJ/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO7109IWDJ](/human-donors/IGVFDO7109IWDJ/) has in progress subobject phenotypic feature [5c7de610-9d77-4450-b755-6296339a9a06](/phenotypic-features/5c7de610-9d77-4450-b755-6296339a9a06/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO7109IWDJ/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO7109IWDJ](/human-donors/IGVFDO7109IWDJ/) has in progress subobject phenotypic feature [58ee8a7b-2d6c-4319-a3ed-659f8f4bd2ad](/phenotypic-features/58ee8a7b-2d6c-4319-a3ed-659f8f4bd2ad/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO7109IWDJ/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO7109IWDJ](/human-donors/IGVFDO7109IWDJ/) has in progress subobject phenotypic feature [2d016559-41a5-4d0d-a206-e9b31fadb322](/phenotypic-features/2d016559-41a5-4d0d-a206-e9b31fadb322/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO7109IWDJ/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO7109IWDJ](/human-donors/IGVFDO7109IWDJ/) has in progress subobject phenotypic feature [73d02d35-b7a0-4250-9e20-8fe585c949ff](/phenotypic-features/73d02d35-b7a0-4250-9e20-8fe585c949ff/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO7109IWDJ/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO7109IWDJ](/human-donors/IGVFDO7109IWDJ/) has in progress subobject phenotypic feature [379eea64-a47e-4b72-9c55-562a0998a7be](/phenotypic-features/379eea64-a47e-4b72-9c55-562a0998a7be/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO7109IWDJ/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO9211DWXZ](/human-donors/IGVFDO9211DWXZ/) has in progress subobject phenotypic feature [48e0e9c9-7759-4913-8219-2471979d793e](/phenotypic-features/48e0e9c9-7759-4913-8219-2471979d793e/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO9211DWXZ/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO9211DWXZ](/human-donors/IGVFDO9211DWXZ/) has in progress subobject phenotypic feature [a0a18d18-51af-4fbc-9a8c-baa6f6b720cd](/phenotypic-features/a0a18d18-51af-4fbc-9a8c-baa6f6b720cd/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO9211DWXZ/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO9211DWXZ](/human-donors/IGVFDO9211DWXZ/) has in progress subobject phenotypic feature [c2f14d65-c7f8-46d1-8093-818906473518](/phenotypic-features/c2f14d65-c7f8-46d1-8093-818906473518/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO9211DWXZ/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO9211DWXZ](/human-donors/IGVFDO9211DWXZ/) has in progress subobject phenotypic feature [2c783c74-fa89-4766-b218-3e0da350c6da](/phenotypic-features/2c783c74-fa89-4766-b218-3e0da350c6da/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO9211DWXZ/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO9211DWXZ](/human-donors/IGVFDO9211DWXZ/) has in progress subobject phenotypic feature [a393f393-5482-4671-b57c-fe8bfe6e8927](/phenotypic-features/a393f393-5482-4671-b57c-fe8bfe6e8927/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO9211DWXZ/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO9211DWXZ](/human-donors/IGVFDO9211DWXZ/) has in progress subobject phenotypic feature [5206796d-df44-42d5-a495-92cfc4ef55c6](/phenotypic-features/5206796d-df44-42d5-a495-92cfc4ef55c6/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO9211DWXZ/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO8155MCUV](/human-donors/IGVFDO8155MCUV/) has in progress subobject phenotypic feature [eb56d44e-c3b9-4e22-aff7-d12c6ac5fa85](/phenotypic-features/eb56d44e-c3b9-4e22-aff7-d12c6ac5fa85/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO8155MCUV/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO8155MCUV](/human-donors/IGVFDO8155MCUV/) has in progress subobject phenotypic feature [46b3e3ac-e90e-4f3c-8941-5af5fceb9b99](/phenotypic-features/46b3e3ac-e90e-4f3c-8941-5af5fceb9b99/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO8155MCUV/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO8155MCUV](/human-donors/IGVFDO8155MCUV/) has in progress subobject phenotypic feature [1ef24011-d1f8-48ff-9e1f-555e57610cd6](/phenotypic-features/1ef24011-d1f8-48ff-9e1f-555e57610cd6/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO8155MCUV/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO8155MCUV](/human-donors/IGVFDO8155MCUV/) has in progress subobject phenotypic feature [d0628ba8-dcc8-4c05-bf8e-08dbbb919b2f](/phenotypic-features/d0628ba8-dcc8-4c05-bf8e-08dbbb919b2f/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO8155MCUV/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO8155MCUV](/human-donors/IGVFDO8155MCUV/) has in progress subobject phenotypic feature [5df41812-ca61-438a-8942-0827a98215bf](/phenotypic-features/5df41812-ca61-438a-8942-0827a98215bf/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO8155MCUV/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO8155MCUV](/human-donors/IGVFDO8155MCUV/) has in progress subobject phenotypic feature [ab0c4c39-15a5-415a-891b-05411b5bdfc6](/phenotypic-features/ab0c4c39-15a5-415a-891b-05411b5bdfc6/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO8155MCUV/"
}
],
"NOT_COMPLIANT": [
{
"category": "missing sequence specification",
"detail": "Measurement set [IGVFDS3438BBIZ](/measurement-sets/IGVFDS3438BBIZ/) has sequence file(s): [IGVFFI8928ACCO](/sequence-files/IGVFFI8928ACCO/), [IGVFFI9981OJIJ](/sequence-files/IGVFFI9981OJIJ/), [IGVFFI5113ZEYX](/sequence-files/IGVFFI5113ZEYX/), [IGVFFI1625LEJS](/sequence-files/IGVFFI1625LEJS/), [IGVFFI7920GPAC](/sequence-files/IGVFFI7920GPAC/), [IGVFFI0012NMWQ](/sequence-files/IGVFFI0012NMWQ/), [IGVFFI9532JINB](/sequence-files/IGVFFI9532JINB/), [IGVFFI1192NRAV](/sequence-files/IGVFFI1192NRAV/), [IGVFFI7961IFEO](/sequence-files/IGVFFI7961IFEO/), [IGVFFI0844LTQC](/sequence-files/IGVFFI0844LTQC/), [IGVFFI4827USTE](/sequence-files/IGVFFI4827USTE/), [IGVFFI9470ENSF](/sequence-files/IGVFFI9470ENSF/) which do not have any `seqspecs`. Sequence files in a file set associated with single cell data are expected to link to a sequence specification file.",
"level": 50,
"level_name": "NOT_COMPLIANT",
"name": "audit_missing_seqspec",
"path": "/measurement-sets/IGVFDS3438BBIZ/"
},
{
"category": "missing strand specificity",
"detail": "Measurement set [IGVFDS3438BBIZ](/measurement-sets/IGVFDS3438BBIZ/) is missing required `strand_specificity`. Single-cell assays are expected to specify strand specificity.",
"level": 50,
"level_name": "NOT_COMPLIANT",
"name": "audit_missing_strand_specificity",
"path": "/measurement-sets/IGVFDS3438BBIZ/"
}
],
"WARNING": [
{
"category": "missing analysis",
"detail": "Measurement set [IGVFDS3438BBIZ](/measurement-sets/IGVFDS3438BBIZ/) is a raw data set with files, but is not listed in any `input_file_sets` for any analysis sets. Raw data sets with files are expected to be associated with at least one analysis set.",
"level": 40,
"level_name": "WARNING",
"name": "audit_input_for",
"path": "/measurement-sets/IGVFDS3438BBIZ/"
}
]
},
"award": {
"@id": "/awards/HG012076/",
"component": "mapping",
"contact_pi": {
"@id": "/users/eae4c275-1e07-45e4-ae67-3e437a8680bb/",
"title": "Ansuman Satpathy"
},
"title": "Single-cell Mapping Center for Human Regulatory Elements and Gene Activity"
},
"control_for": [],
"controlled_access": false,
"creation_timestamp": "2025-03-19T21:46:17.570021+00:00",
"data_use_limitation_summaries": [
"No limitations"
],
"donors": [
{
"@id": "/human-donors/IGVFDO8458OKEW/",
"accession": "IGVFDO8458OKEW",
"aliases": [
"igvf:corces_donor_BANN1623"
],
"sex": "male",
"status": "preview",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO6013FYCW/",
"accession": "IGVFDO6013FYCW",
"aliases": [
"igvf:corces_donor_BANN0912"
],
"sex": "male",
"status": "preview",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO5410JIJT/",
"accession": "IGVFDO5410JIJT",
"aliases": [
"igvf:corces_donor_BANN0919"
],
"sex": "male",
"status": "preview",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO7186XJLL/",
"accession": "IGVFDO7186XJLL",
"aliases": [
"igvf:corces_donor_BANN1639"
],
"sex": "male",
"status": "preview",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO9211DWXZ/",
"accession": "IGVFDO9211DWXZ",
"aliases": [
"igvf:corces_donor_BANN1352"
],
"sex": "female",
"status": "preview",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO5194SXHC/",
"accession": "IGVFDO5194SXHC",
"aliases": [
"igvf:corces_donor_BANN1747"
],
"sex": "male",
"status": "preview",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO7109IWDJ/",
"accession": "IGVFDO7109IWDJ",
"aliases": [
"igvf:corces_donor_BANN2005"
],
"sex": "male",
"status": "preview",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO8155MCUV/",
"accession": "IGVFDO8155MCUV",
"aliases": [
"igvf:corces_donor_BANN0437"
],
"sex": "female",
"status": "preview",
"taxa": "Homo sapiens"
}
],
"externally_hosted": false,
"file_set_type": "experimental data",
"files": [
{
"@id": "/sequence-files/IGVFFI8928ACCO/",
"accession": "IGVFFI8928ACCO",
"aliases": [
"igvf:corces_sequenceFile_RNA_RP031_G3_P080_L006_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2025-03-21T01:14:06.262104+00:00",
"file_format": "fastq",
"file_size": 1175753194,
"href": "/sequence-files/IGVFFI8928ACCO/@@download/IGVFFI8928ACCO.fastq.gz",
"s3_uri": "s3://igvf-files/2025/03/21/2ff36233-71b2-44f8-93c4-011db843b2c4/IGVFFI8928ACCO.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "Multiome_RNA_RP031_G3_L003_P080_S39_L006_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI9981OJIJ/",
"accession": "IGVFFI9981OJIJ",
"aliases": [
"igvf:corces_sequenceFile_RNA_RP031_G3_P080_L006_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2025-03-21T01:14:57.576108+00:00",
"file_format": "fastq",
"file_size": 1189020518,
"href": "/sequence-files/IGVFFI9981OJIJ/@@download/IGVFFI9981OJIJ.fastq.gz",
"s3_uri": "s3://igvf-files/2025/03/21/bb7ae6fd-2109-43d0-97b9-c25b67453136/IGVFFI9981OJIJ.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "Multiome_RNA_RP031_G3_L003_P080_S39_L006_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI5113ZEYX/",
"accession": "IGVFFI5113ZEYX",
"aliases": [
"igvf:corces_sequenceFile_RNA_RP031_G3_P080_L006_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2025-03-21T01:15:13.489365+00:00",
"file_format": "fastq",
"file_size": 14218758334,
"href": "/sequence-files/IGVFFI5113ZEYX/@@download/IGVFFI5113ZEYX.fastq.gz",
"s3_uri": "s3://igvf-files/2025/03/21/6148ca22-1de2-4435-9985-5c051ebb81f2/IGVFFI5113ZEYX.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "Multiome_RNA_RP031_G3_L003_P080_S39_L006_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI1625LEJS/",
"accession": "IGVFFI1625LEJS",
"aliases": [
"igvf:corces_sequenceFile_RNA_RP031_G3_P080_L006_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2025-03-21T01:15:23.158536+00:00",
"file_format": "fastq",
"file_size": 10584916254,
"href": "/sequence-files/IGVFFI1625LEJS/@@download/IGVFFI1625LEJS.fastq.gz",
"s3_uri": "s3://igvf-files/2025/03/21/0a5728ca-349a-4502-9fa1-7b43c39092b4/IGVFFI1625LEJS.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "Multiome_RNA_RP031_G3_L003_P080_S39_L006_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI7920GPAC/",
"accession": "IGVFFI7920GPAC",
"aliases": [
"igvf:corces_sequenceFile_RNA_RP031_G3_P080_L007_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2025-03-21T01:15:31.115400+00:00",
"file_format": "fastq",
"file_size": 1195667269,
"href": "/sequence-files/IGVFFI7920GPAC/@@download/IGVFFI7920GPAC.fastq.gz",
"s3_uri": "s3://igvf-files/2025/03/21/b7ae9eaf-a0bc-4a26-9fc6-84dff6162f37/IGVFFI7920GPAC.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "Multiome_RNA_RP031_G3_L003_P080_S39_L007_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI0012NMWQ/",
"accession": "IGVFFI0012NMWQ",
"aliases": [
"igvf:corces_sequenceFile_RNA_RP031_G3_P080_L007_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2025-03-21T01:15:41.060726+00:00",
"file_format": "fastq",
"file_size": 1208328736,
"href": "/sequence-files/IGVFFI0012NMWQ/@@download/IGVFFI0012NMWQ.fastq.gz",
"s3_uri": "s3://igvf-files/2025/03/21/7c38da63-633a-4efd-9416-6770cd7f7431/IGVFFI0012NMWQ.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "Multiome_RNA_RP031_G3_L003_P080_S39_L007_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI9532JINB/",
"accession": "IGVFFI9532JINB",
"aliases": [
"igvf:corces_sequenceFile_RNA_RP031_G3_P080_L007_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2025-03-21T01:15:52.409450+00:00",
"file_format": "fastq",
"file_size": 14330573590,
"href": "/sequence-files/IGVFFI9532JINB/@@download/IGVFFI9532JINB.fastq.gz",
"s3_uri": "s3://igvf-files/2025/03/21/c66ebf86-cd52-448f-b6a3-e36daf9709e2/IGVFFI9532JINB.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "Multiome_RNA_RP031_G3_L003_P080_S39_L007_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI1192NRAV/",
"accession": "IGVFFI1192NRAV",
"aliases": [
"igvf:corces_sequenceFile_RNA_RP031_G3_P080_L007_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2025-03-21T01:16:06.115384+00:00",
"file_format": "fastq",
"file_size": 10745235185,
"href": "/sequence-files/IGVFFI1192NRAV/@@download/IGVFFI1192NRAV.fastq.gz",
"s3_uri": "s3://igvf-files/2025/03/21/62d78948-f012-411e-851a-9605c5e91596/IGVFFI1192NRAV.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "Multiome_RNA_RP031_G3_L003_P080_S39_L007_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI7961IFEO/",
"accession": "IGVFFI7961IFEO",
"aliases": [
"igvf:corces_sequenceFile_RNA_RP031_G3_P080_L008_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2025-03-21T01:16:13.231751+00:00",
"file_format": "fastq",
"file_size": 1181201619,
"href": "/sequence-files/IGVFFI7961IFEO/@@download/IGVFFI7961IFEO.fastq.gz",
"s3_uri": "s3://igvf-files/2025/03/21/3cdaa6f0-01c3-4a64-9648-e72b9a43b7b3/IGVFFI7961IFEO.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "Multiome_RNA_RP031_G3_L003_P080_S39_L008_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI0844LTQC/",
"accession": "IGVFFI0844LTQC",
"aliases": [
"igvf:corces_sequenceFile_RNA_RP031_G3_P080_L008_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2025-03-21T01:16:15.324554+00:00",
"file_format": "fastq",
"file_size": 1183641874,
"href": "/sequence-files/IGVFFI0844LTQC/@@download/IGVFFI0844LTQC.fastq.gz",
"s3_uri": "s3://igvf-files/2025/03/21/cc6142bf-0e29-4d34-9a34-cdc4934fddaa/IGVFFI0844LTQC.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "Multiome_RNA_RP031_G3_L003_P080_S39_L008_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI4827USTE/",
"accession": "IGVFFI4827USTE",
"aliases": [
"igvf:corces_sequenceFile_RNA_RP031_G3_P080_L008_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2025-03-21T01:16:17.254376+00:00",
"file_format": "fastq",
"file_size": 14110575531,
"href": "/sequence-files/IGVFFI4827USTE/@@download/IGVFFI4827USTE.fastq.gz",
"s3_uri": "s3://igvf-files/2025/03/21/52cb3a75-62e6-4dcc-8d38-d35bcc32c664/IGVFFI4827USTE.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "Multiome_RNA_RP031_G3_L003_P080_S39_L008_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI9470ENSF/",
"accession": "IGVFFI9470ENSF",
"aliases": [
"igvf:corces_sequenceFile_RNA_RP031_G3_P080_L008_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2025-03-21T01:16:19.439166+00:00",
"file_format": "fastq",
"file_size": 10499957604,
"href": "/sequence-files/IGVFFI9470ENSF/@@download/IGVFFI9470ENSF.fastq.gz",
"s3_uri": "s3://igvf-files/2025/03/21/82a75b33-dd30-432c-8e8d-b78cf0f891db/IGVFFI9470ENSF.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "Multiome_RNA_RP031_G3_L003_P080_S39_L008_R2_001.fastq.gz",
"upload_status": "validated"
}
],
"input_for": [],
"lab": {
"@id": "/labs/ryan-corces/",
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"multiome_size": 2,
"onlist_files": [
"/tabular-files/IGVFFI8751YQRY/"
],
"onlist_method": "no combination",
"preferred_assay_title": "10x multiome",
"protocols": [
"https://www.protocols.io/view/chromium-next-gem-single-cell-multiome-atac-gene-e-d5k784zn"
],
"related_multiome_datasets": [
{
"@id": "/measurement-sets/IGVFDS1602DOZK/",
"accession": "IGVFDS1602DOZK",
"status": "preview"
}
],
"samples": [
{
"@id": "/multiplexed-samples/IGVFSM7198HQDQ/",
"@type": [
"MultiplexedSample",
"Sample",
"Item"
],
"accession": "IGVFSM7198HQDQ",
"aliases": [
"igvf:corces_multiplexedSample_RP031_G3"
],
"classifications": [
"tissue",
"multiplexed sample"
],
"disease_terms": [
{
"@id": "/phenotype-terms/DOID_0080832/",
"status": "in progress",
"term_name": "mild cognitive impairment"
},
{
"@id": "/phenotype-terms/DOID_14330/",
"status": "in progress",
"term_name": "Parkinson's disease"
},
{
"@id": "/phenotype-terms/DOID_2377/",
"status": "in progress",
"term_name": "multiple sclerosis"
},
{
"@id": "/phenotype-terms/DOID_9246/",
"status": "in progress",
"term_name": "cerebral amyloid angiopathy"
},
{
"@id": "/phenotype-terms/MONDO_0004975/",
"status": "released",
"term_name": "Alzheimer disease"
}
],
"institutional_certificates": [
{
"@id": "/institutional-certificates/f7742e0d-bba4-4ca3-ab80-71c7364f24e7/",
"certificate_identifier": "IP115-05",
"controlled_access": false,
"status": "in progress"
}
],
"modifications": [],
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0001874/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"status": "preview",
"summary": "putamen",
"term_name": "putamen"
},
{
"@id": "/sample-terms/UBERON_0002038/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"status": "preview",
"summary": "substantia nigra",
"term_name": "substantia nigra"
},
{
"@id": "/sample-terms/UBERON_0002740/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"status": "preview",
"summary": "posterior cingulate gyrus",
"term_name": "posterior cingulate gyrus"
}
],
"status": "preview",
"summary": "multiplexed sample: Homo sapiens (male, 78 years) putamen tissue associated with Parkinson's disease, mild cognitive impairment; Homo sapiens (male, 70 years) putamen tissue associated with Parkinson's disease; ... and 6 more samples",
"taxa": "Homo sapiens",
"treatments": []
}
],
"schema_version": "26",
"status": "preview",
"submitted_by": {
"@id": "/users/c13db3ca-f844-4a69-9056-5fbc4a100f36/",
"title": "Ryan Corces"
},
"submitted_files_timestamp": "2025-03-21T01:14:06.262104+00:00",
"summary": "single-nucleus RNA sequencing assay (10x multiome)",
"uuid": "39bf29e7-1016-4fb7-87b9-c41c04a09c05"
}